BAC Information

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BAC

Clone NameB6Ng01-127A05
Chromosome15 (Build37)
Map Location 22,792,832 - 22,924,458
singlet/doubletdoublet
Overlap geneCdh18
Upstream geneLOC100040351, EG545091
Downstream geneLOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127A05.bB6Ng01-127A05.g
ACCDH929240DH929241
length1,140689
definitionDH929240|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A05, 5' end.DH929241|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,792,832 - 22,793,979)(22,923,766 - 22,924,458)
sequence
gaattccatggaggaactcgtgtactggagaacccacttccatttaaaga
tattgccaaatattgtgctttccagagagaataaacagattgattttcct
gattgcttcaacaatgaaaaggcactgataaaaaagaaatcaacagacca
agtagctaaaaaaaatattgagggtacatagtgcttgtggtgtttgtata
cacataaatatatgtatatctatatatagttatttcatctgaaacaaaaa
aaaatattttctctatacgtttggacatgttacttagtgaaatacaacat
gctggaagaaaaaaaaatagactatttttcactatttgttgtgacaggaa
cagaaaatgtgtccaggcagagagagagtttcagctactagtatttttta
tcttaggttaaaaggcagtatttgtatgtggatagccaattgtaacaagg
aacaaaaataaaacagggaagtgattacacaactctgtagtataagggaa
tagtctaagtcaataagaagcatttcatttcatctttcacaccaaggaga
tcttgtagaccaagcacaacactacaggtgatccagagaaaggacaaata
atatgaagtcacagtgagtgtactctttgctttagctgtttgtgagtgtt
cacaagagtgatttgatgaagcctaaaattataaaagtaacatttgtgac
tgaattatgtaaaaatttgtgtattcgtataagttagaattatttggaaa
gcaaaaccacttgagagtattccactaattctgggttttatatttcagtt
aattttggcttactaattcaaagcaacttctgtttctaaatgtcactgaa
gaaggaaaatatttggaattgagtatacataccttaatatgtcattgtta
taatctctcagagctatagttgacattgaatattctgaaaacagtttata
gataacattgatattacccaaaccaacatatatctaacacggcatgaatc
atagaactcatagtttatttgcccatttgttttctaatagcaacagaaat
ggaaagagcatggataccagaactagggtatttggacccatgatccgaaa
tttctggttaaaggtgagcattgaaatgaatctgtacaaa
gaattctctataaagacagaagtgtttatttattttttctgagggtactg
tgggggcatccacagaaaaataatgactctaaaaccaaacaaaacactta
taaaccattatcctagtattggctctctgttcaggaggtggctgcaagca
ttgaagaaggcaaacgtgttacaagaaaatgaagatgctatcatgtccct
agctgacctacagggtctttgataaggtgtggaatccttcaacaatggcc
tccaaagagttctgctgactaaattagtcatttagctcatgtcatatcat
ttgcttcatgacttcatagtttttgttctctctggaatcaatactcatag
tttcttctcaatttttctagaaagatgcattcagaaagccctttgattca
taaatctttacactccgaggcagagatcaacaacctctattaccatgtat
actattcagacttttatttctaagtaaaatagcaactctatgtcgtgtaa
aagctttactttatgctttcaagggatttgctaaagggtagaggttttat
ttttaccctttgcagtatgagggaaaagccactgaaatttttgcaaatca
caagaattttactaggatgcagaaaactctgaacttgtgtaaatggtttc
ccagttttgattctcttataggtcactgatcataattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22792832_22793979
seq2: B6Ng01-127A05.b_46_1185

seq1  GAATTCCATGGAGGAACTCGTGTACTGGAGAACCCACTTCCATTTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAGGAACTCGTGTACTGGAGAACCCACTTCCATTTAAAGA  50

seq1  TATTGCCAAATATTGTGCTTTCCAGAGAGAATAAACAGATTGATTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCAAATATTGTGCTTTCCAGAGAGAATAAACAGATTGATTTTCCT  100

seq1  GATTGCTTCAACAATGAAAAGGCACTGATAAAAAAGAAATCAACAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTCAACAATGAAAAGGCACTGATAAAAAAGAAATCAACAGACCA  150

seq1  AGTAGCTAAAAAAAATATTGAGGGTACATAGTGCTTGTGGTGTTTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAAAAAAAATATTGAGGGTACATAGTGCTTGTGGTGTTTGTATA  200

seq1  CACATAAATATATGTATATCTATATATAGTTATTTCATCTGAAACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATATATGTATATCTATATATAGTTATTTCATCTGAAACAAAAA  250

seq1  AAAATATTTTCTCTATACGTTTGGACATGTTACTTAGTGAAATACAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTCTCTATACGTTTGGACATGTTACTTAGTGAAATACAACAT  300

seq1  GCTGGAAGAAAAAAAAATAGACTATTTTTCACTATTTGTTGTGACAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGAAAAAAAAATAGACTATTTTTCACTATTTGTTGTGACAGGAA  350

seq1  CAGAAAATGTGTCCAGGCAGAGAGAGAGTTTCAGCTACTAGTATTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTGTCCAGGCAGAGAGAGAGTTTCAGCTACTAGTATTTTTTA  400

seq1  TCTTAGGTTAAAAGGCAGTATTTGTATGTGGATAGCCAATTGTAACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTAAAAGGCAGTATTTGTATGTGGATAGCCAATTGTAACAAGG  450

seq1  AACAAAAATAAAACAGGGAAGTGATTACACAACTCTGTAGTATAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATAAAACAGGGAAGTGATTACACAACTCTGTAGTATAAGGGAA  500

seq1  TAGTCTAAGTCAATAAGAAGCATTTCATTTCATCTTTCACACCAAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAAGTCAATAAGAAGCATTTCATTTCATCTTTCACACCAAGGAGA  550

seq1  TCTTGTAGACCAAGCACAACACTACAGGTGATCCAGAGAAAGGACAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGACCAAGCACAACACTACAGGTGATCCAGAGAAAGGACAAATA  600

seq1  ATATGAAGTCACAGTGAGTGTACTCTTTGCTTTAGCTGTTTGTGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTCACAGTGAGTGTACTCTTTGCTTTAGCTGTTTGTGAGTGTT  650

seq1  CACAAGAGTGATTTGATGAAGCCTAAAATTATAAAAGTAACATTTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGTGATTTGATGAAGCCTAAAATTATAAAAGTAACATTTGTGAC  700

seq1  TGAATTATGTAAAAATTTGTGTATTCGTATAAGTTAGAATTATTTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATGTAAAAATTTGTGTATTCGTATAAGTTAGAATTATTTGGAAA  750

seq1  GCAAAACCACTTGAGAGTATTCCACTAATTCTGGGTTTTATATTTCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCACTTGAGAGTATTCCACTAATTCTGGGTTTTATATTTCAGTT  800

seq1  AATTTTGGCTTACTAATTCAAAGCAACTTCTGTTTCTAAATGTCACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGCTTACTAATTCAAAGCAACTTCTGTTTCTAAATGTCACTGAA  850

seq1  GAAGGAAAATATTTGGAATTGAGTATACATACCTTAATATGTCATTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAATATTTGGAATTGAGTATACATACCTTAATATGTCATTGTTA  900

seq1  TAATCTCTCAGAGCTATAGTTGACATTGAATATTCTGAAAACAGTTTATT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATCTCTCAGAGCTATAGTTGACATTGAATATTCTGAAAACAGTTTA-T  949

seq1  AGATAACATTGATATTACCCAAAACCAACATATATCTAACACGGCATGAA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATAACATTGATATTACCC-AAACCAACATATATCTAACACGGCATGAA  998

seq1  TCATAGAACTCATAGTTTTATTTGCCCATCTGTTTTCTAAATAGCAACAG  1050
      ||||||||||||||| ||||||||||||| |||||||| |||||||||||
seq2  TCATAGAACTCATAG-TTTATTTGCCCATTTGTTTTCT-AATAGCAACAG  1046

seq1  ATAT-GAAAGAGCATGAATACCAGAACTAAGGTTAATTTGGACCCATGAT  1099
      | || ||||||||||| |||||||||||| |||  |||||||||||||||
seq2  AAATGGAAAGAGCATGGATACCAGAACTAGGGT--ATTTGGACCCATGAT  1094

seq1  CCGACA-TTCTGGTTTAAAAGTGTAGTATATGTAAATGAATCTGTACAAA  1148
      |||| | |||||| ||||| ||| || || || |||||||||||||||||
seq2  CCGAAATTTCTGG-TTAAAGGTG-AGCAT-TG-AAATGAATCTGTACAAA  1140

seq1: chr15_22923766_22924458
seq2: B6Ng01-127A05.g_67_755 (reverse)

seq1  AGAAATATGATCAATTACCTATAAGAGAATCAAAAACTGGGAAACCATTT  50
      |||| |||||||| | ||||||||||||||| ||||||||||||||||||
seq2  AGAATTATGATCAGTGACCTATAAGAGAATC-AAAACTGGGAAACCATTT  49

seq1  AACACAAGTTCAGAGTTTTTCTTGCATCCTAGTAAAATTCTTGTGATTTG  100
       ||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  -ACACAAGTTCAGAGTTTT--CTGCATCCTAGTAAAATTCTTGTGATTTG  96

seq1  CAAAAATTTCAGTGGCTTTTCCCTCATACTGCAAAGGGTAAAAATAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTCAGTGGCTTTTCCCTCATACTGCAAAGGGTAAAAATAAAAC  146

seq1  CTCTACCCTTTAGCAAATCCCTTGAAAGCATAAAGTAAAGCTTTTACACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCTTTAGCAAATCCCTTGAAAGCATAAAGTAAAGCTTTTACACG  196

seq1  ACATAGAGTTGCTATTTTACTTAGAAATAAAAGTCTGAATAGTATACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTTGCTATTTTACTTAGAAATAAAAGTCTGAATAGTATACATG  246

seq1  GTAATAGAGGTTGTTGATCTCTGCCTCGGAGTGTAAAGATTTATGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGAGGTTGTTGATCTCTGCCTCGGAGTGTAAAGATTTATGAATCA  296

seq1  AAGGGCTTTCTGAATGCATCTTTCTAGAAAAATTGAGAAGAAACTATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTTCTGAATGCATCTTTCTAGAAAAATTGAGAAGAAACTATGAG  346

seq1  TATTGATTCCAGAGAGAACAAAAACTATGAAGTCATGAAGCAAATGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTCCAGAGAGAACAAAAACTATGAAGTCATGAAGCAAATGATAT  396

seq1  GACATGAGCTAAATGACTAATTTAGTCAGCAGAACTCTTTGGAGGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGCTAAATGACTAATTTAGTCAGCAGAACTCTTTGGAGGCCATT  446

seq1  GTTGAAGGATTCCACACCTTATCAAAGACCCTGTAGGTCAGCTAGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGATTCCACACCTTATCAAAGACCCTGTAGGTCAGCTAGGGACA  496

seq1  TGATAGCATCTTCATTTTCTTGTAACACGTTTGCCTTCTTCAATGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCATCTTCATTTTCTTGTAACACGTTTGCCTTCTTCAATGCTTGC  546

seq1  AGCCACCTCCTGAACAGAGAGCCAATACTAGGATAATGGTTTATAAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTCCTGAACAGAGAGCCAATACTAGGATAATGGTTTATAAGTGT  596

seq1  TTTGTTTGGTTTTAGAGTCATTATTTTTCTGTGGATGCCCCCACAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTTTTAGAGTCATTATTTTTCTGTGGATGCCCCCACAGTACC  646

seq1  CTCAGAAAAAATAAATAAACACTTCTGTCTTTATAGAGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAAATAAATAAACACTTCTGTCTTTATAGAGAATTC  689