BAC Information

Click to search

BAC

Clone NameB6Ng01-128I07
Chromosome15 (Build37)
Map Location 101,090,818 - 101,236,487
singlet/doubletdoublet
Overlap geneNr4a1, 9430023L20Rik, 6030408B16Rik, Krt80
Upstream geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp
Downstream geneKrt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128I07.bB6Ng01-128I07.g
ACCDH930347DH930348
length5901,100
definitionDH930347|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I07, 5' end.DH930348|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,090,818 - 101,091,413)(101,235,404 - 101,236,487)
sequence
ccatgtcaaatatattgccaatgccaccctgaggggctgccagccagggc
cccgtgagtgttagagctgcaagtcttgtgacgtgggcacctgtttgcca
ggcctgggcatgggcccagggtcatgctcactctggggctcccgtcagct
gactattttgggctcttgctgacctgggccaaagtcaggccctagccaag
agagccttgaggcggctctcccggtccccagaggccagctctggtttctg
ctatataaacagaagaggacgcattggctcggagacagttcccatccaga
gtttgctccgtcagtgcctggcctcagctgggaaggacaggcgggccagc
tgtcacagatccccacggagttcctgaggctgtggaaagaccctccacta
accctggattcctcttttgccccctgggtctgtgaggacacatgctggta
agtttaggtgactggagataccaaggcacaaaaaaaaaaaaaaaaaaaaa
aaaagctgtgctgtttggattttcccccactctgtccatcctgccagatg
ttctccactgtgagtggcaggctagattcttgaggggagg
gaattccactccattagcaacctcttcctcctagaattcccatgcccttc
tccaccctgctccctccaaccacctcttcctttgctattacagaagcctt
tcctctctgtgcaccttcattgcccatgagggtgagaagtcagacatcac
cagtaagatgaggtttaagtggcatgaagaagcagatattgaaaggatct
tttgaaattctttatatttgttatttatttattattgtaagtgtgcagca
acagaggatatgctacacctagcccgtgcgcggtcaaaagggtcaaagag
cctcttagagtcagctccctccctccacgaggggggtttcggggggtcaa
acacagttagctagacttggtttccgcatctttacccactgagccagctc
cagctccagctccagaaggaccctttggaagaaagggaaaatgatagaaa
agttgtcttaaagcagtaagcaagcgttaaaaaaaggcctatttacaaca
ggtgagacctatgcacacagaatgacacatgagaggcaggtgtgtgaaag
ggatctgaaatgagagagacttgtgcaaatcgaggaagcaggggccaaaa
gaatgctcctaagagacttggcagagcacaggagacaaggaagatgagct
gagggcagtgagcacacatatatccagatgtcccccgtgggtggtgcagg
ccaagtcaggctctagagcatctatataggtcagcttctggcagacgcat
ccgccttctccagtacagctccagggattttgcttggcttgggttactga
ggaaataaagaaaagacaaacatacagaggcagaaatattggcattgggt
gttcggggcttctccgatgaagacgtgaggcaccctgaaacttcagcatg
attattagaacagtttgtaatggggacactggggtcattgtagaagctga
acagggatggcgggggtcagcttagctgtgagggcagtcttctgttgggt
ggacagcttcgggctgtcatttctgggagcagaggaggctatgtggcttg
tcttttgcatagcggaagggaagacttttgcctacatcctacctggatgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101090818_101091413
seq2: B6Ng01-128I07.b_47_642

seq1  GAATTCCCATGTCAAATATATTGCCAATGCCACCCTGAGGGGCTGCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTCAAATATATTGCCAATGCCACCCTGAGGGGCTGCCAGC  50

seq1  CAGGGCCCCGTGAGTGTTAGAGCTGCAAGTCTTGTGACGTGGGCACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCCGTGAGTGTTAGAGCTGCAAGTCTTGTGACGTGGGCACCTGT  100

seq1  TTGCCAGGCCTGGGCATGGGCCCAGGGTCATGCTCACTCTGGGGCTCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGCCTGGGCATGGGCCCAGGGTCATGCTCACTCTGGGGCTCCCG  150

seq1  TCAGCTGACTATTTTGGGCTCTTGCTGACCTGGGCCAAAGTCAGGCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGACTATTTTGGGCTCTTGCTGACCTGGGCCAAAGTCAGGCCCTA  200

seq1  GCCAAGAGAGCCTTGAGGCGGCTCTCCCGGTCCCCAGAGGCCAGCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGAGCCTTGAGGCGGCTCTCCCGGTCCCCAGAGGCCAGCTCTGG  250

seq1  TTTCTGCTATATAAACAGAAGAGGACGCATTGGCTCGGAGACAGTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTATATAAACAGAAGAGGACGCATTGGCTCGGAGACAGTTCCCA  300

seq1  TCCAGAGTTTGCTCCGTCAGTGCCTGGCCTCAGCTGGGAAGGACAGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTTGCTCCGTCAGTGCCTGGCCTCAGCTGGGAAGGACAGGCGG  350

seq1  GCCAGCTGTCACAGATCCCCACGGAGTTCCTGAGGCTGTGGAAAGACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGTCACAGATCCCCACGGAGTTCCTGAGGCTGTGGAAAGACCCT  400

seq1  CCACTAACCCTGGATTCCTCTTTTGCCCCCTGGGTCTGTGAGGACACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAACCCTGGATTCCTCTTTTGCCCCCTGGGTCTGTGAGGACACATG  450

seq1  CTGGTAAGTTTAGGTGACTGGAGATACCAAGGCACAAAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGTTTAGGTGACTGGAGATACCAAGGCACAAAAAAAAAAAAAAA  500

seq1  AAAAAAAAAAGCTGTGCTGTTTGGATTTTCCCCCACTCTGTCCATCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGCTGTGCTGTTTGGATTTTCCCCCACTCTGTCCATCCTGC  550

seq1  CAGATGTTCTCCACTGTGAGTGGCAGGCTAGATTCTTGAGGGGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTCTCCACTGTGAGTGGCAGGCTAGATTCTTGAGGGGAGG  596

seq1: chr15_101235404_101236487
seq2: B6Ng01-128I07.g_69_1168 (reverse)

seq1  CCATCAGGCTAGGTTGTAGGC-AAAGTCTTCCCTTCAGTGTATGCAAAAA  49
      |||||  | |||| ||||||| |||||||||||||| |  ||||||||| 
seq2  CCATCCAGGTAGGATGTAGGCAAAAGTCTTCCCTTCCG-CTATGCAAAAG  49

seq1  ACGAGCACCCTAGCTTCTTCTGCCTCCCAGGTACTTACAGCCCGAAGACT  99
      || |||  | |||| || |||| |||||| | | | ||||||||||| ||
seq2  ACAAGCCACATAGCCTCCTCTG-CTCCCA-GAAATGACAGCCCGAAG-CT  96

seq1  GCTCA-CCAACAG-AGACTGCCCCTACAGCTTAGCTGA-CCCCGCC-TTC  145
      |  || ||||||| |||||||||  |||||| |||||| ||||||| | |
seq2  GTCCACCCAACAGAAGACTGCCCTCACAGCTAAGCTGACCCCCGCCATCC  146

seq1  CTGTTCAGC-TCTACCAATGA-CCCAGTGTCCCCATT--CAACTGTTCTA  191
      ||||||||| |||| |||||| |||||||||||||||   ||||||||||
seq2  CTGTTCAGCTTCTA-CAATGACCCCAGTGTCCCCATTACAAACTGTTCTA  195

seq1  ATAATCATGCTGAGCTTCCGGGGTGCCTCACGTCTTCATC-GAGGAGCCC  240
      |||||||||||||  || | |||||||||||||||||||| ||| |||||
seq2  ATAATCATGCTGAAGTTTCAGGGTGCCTCACGTCTTCATCGGAGAAGCCC  245

seq1  CGAACACCCAGTGCCAATATTTCTGCCTCTGTATGTTTGTCTTTTCTTTA  290
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGAACACCCAATGCCAATATTTCTGCCTCTGTATGTTTGTCTTTTCTTTA  295

seq1  TTTCCTCAGTAACCC-AGGCAAGC-AAATCCCTGGAGCTGTACTGGAGAA  338
      ||||||||||||||| || ||||| |||||||||||||||||||||||||
seq2  TTTCCTCAGTAACCCAAGCCAAGCAAAATCCCTGGAGCTGTACTGGAGAA  345

seq1  GGCGGATGCGTCTGCCAGAAGCTGACCTAGATAGATGCTCTAGAGCCTGA  388
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCGGATGCGTCTGCCAGAAGCTGACCTATATAGATGCTCTAGAGCCTGA  395

seq1  CTTGGCCTGCACCACCCACGGGGGACATCTGGATATATGTGTGCTCACTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTGCACCACCCACGGGGGACATCTGGATATATGTGTGCTCACTG  445

seq1  CCCTCAGCTCATCTTCCTTGTCTCCTGTGCTCTGCCAAGTCTCTTAGGAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTCATCTTCCTTGTCTCCTGTGCTCTGCCAAGTCTCTTAGGAG  495

seq1  CATTCCTTTGGCCCCTGCTTCCTCGATTTGCACAAGTCTCTCTCATTTCA  538
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTGGCCCCTGCTTCCTCGATTTGCACAAGTCTCTCTCATTTCA  545

seq1  GATCCCTTTCACACACCTGCCTCTCATGTGTCATTCTGTGTGCATAGGTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTTCACACACCTGCCTCTCATGTGTCATTCTGTGTGCATAGGTC  595

seq1  TCACCTGTTGTAAATAGGCCTTTCTTTAA-GCTTGCTTACTGCTTTAAGA  637
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  TCACCTGTTGTAAATAGGCCTTTTTTTAACGCTTGCTTACTGCTTTAAGA  645

seq1  CAACTTTTCTATCATTTTCCCTTTCTTCCAAAGGGTCCTTCTGGAGCTGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTCTATCATTTTCCCTTTCTTCCAAAGGGTCCTTCTGGAGCTGG  695

seq1  AGCTGGAGCTGGCTCAGTGGGTAAAGATGCTGAAACCAAGTCTAGCTAAC  737
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCTGGAGCTGGCTCAGTGGGTAAAGATGCGGAAACCAAGTCTAGCTAAC  745

seq1  TGTGTTTGACCCCCCGAAACCCACATGGTGGATGGAGGGAGCTGACTCTA  787
      |||||||||||||||||||||| | | ||||| |||||||||||||||||
seq2  TGTGTTTGACCCCCCGAAACCCCCCTCGTGGAGGGAGGGAGCTGACTCTA  795

seq1  AGCTGCCTTCTGACC---TTCACATGCGCAC------CGTGTAGCATATC  828
      ||  ||  | |||||   || ||  ||||||       ||||||||||||
seq2  AGAGGCTCTTTGACCCTTTTGAC-CGCGCACGGGCTAGGTGTAGCATATC  844

seq1  CTCTGTTGCTGCACACTTACAATAATAAATAAATAACAAATATAAAGAAT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGCTGCACACTTACAATAATAAATAAATAACAAATATAAAGAAT  894

seq1  TTCAAAAGATCCTTTCAATATCTGCTTCTTCATGCCACTTAAACCTCATC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGATCCTTTCAATATCTGCTTCTTCATGCCACTTAAACCTCATC  944

seq1  TTACTGGTGATGTCTGACTTCTCACCCTCATGGGCAATGAAGGTGCACAG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTGATGTCTGACTTCTCACCCTCATGGGCAATGAAGGTGCACAG  994

seq1  AGAGGAAAGGCTTCTGTAATAGCAAAGGAAGAGGTGGTTGGAGGGAGCAG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGGCTTCTGTAATAGCAAAGGAAGAGGTGGTTGGAGGGAGCAG  1044

seq1  GGTGGAGAAGGGCATGGGAATTCTAGGAGGAAGAGGTTGCTAATGGAGTG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAAGGGCATGGGAATTCTAGGAGGAAGAGGTTGCTAATGGAGTG  1094

seq1  GAATTC  1084
      ||||||
seq2  GAATTC  1100