BAC Information

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BAC

Clone NameB6Ng01-129C16
Chromosome15 (Build37)
Map Location 35,294,420 - 35,443,965
singlet/doubletdoublet
Overlap geneVps13b
Upstream geneMatn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3, Osr2
Downstream geneEG666183, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129C16.bB6Ng01-129C16.g
ACCDH930823DH930824
length1,0551,111
definitionDH930823|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C16, 5' end.DH930824|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,294,420 - 35,295,076)(35,442,829 - 35,443,965)
sequence
gaattctagcatacactgaagaccaggtgaggcatctagcctcatggact
gagcagctactggattcttggacttctcactcatagtcagccattgttgg
attagcaggactgctgtttctaagtcatatacacacaaattttggcataa
tttcttacacaatattttaaggggtggggctgatggcactgcttccttga
gggagataaacccttgagaatctaaagtactacaaaatggtaccaggagt
ggttctagagcaagagaagttaagtgtctggaataggctttttttgctag
tactcttggtaaaatagcttgacctgttactgagccctctctctcctagc
tcagaaagaactaatagcccacagtgtgagctactatacaaactcaaaaa
gataaatacatttgattatcttttaaaaaacattttttattagatatttt
cttcatttacatttcaaatgctatcaaatttctataccctccccctgccc
tgctccccaacccacccactcctgcttcctggccttggtgttcccctgta
ctgggacatataatctttgcaagaccaagggcctctcctcccaatgatgg
cctactaggccatcttctgctacatatacagctagagacatgagctctgg
ggttactgattagttcatattgttgtttctcctatagggttgaagatccc
ttcagttccttgggtactttctctagctcctccattggggaccctgtgtt
ccatccaatagatgactgtgagcatccacttctgtatttgccagacactg
gcatagcctcacaagacacaactatatcagggtcctgttggcaaaatctt
gctggcatatgcaatagcgtctaggtttggtggctgattataggatggat
ccccgggtggggcagtctctgggtagtccttccttccatctcagctccaa
actttgtgtctgtaactcctttcatgggtatttgttccccattctaagga
ggacgaagtatccacatttagtctttcttcttcttgagtttcatgtgttt
tgcaa
gaattcaacacagagccaatttgtgctagccacaaaagaggatacacatc
attaatggttataataaatcaagactgtatttatttacctaatggtgtag
caataattttcattatattactatcctcaattctctcatgcccctacatt
caaagttttaatagcagcttttattctgaaagacctaagttgtaagaaca
ttcataccacttcataactttgacacaaagtacatagaagcagattagac
ttcatttggtataaaatcagttggcacttttacatctgtgcatgcaacat
aaatacaccagctggcatctcaagcacacacacatatggacttcaaaaca
gaaacttccttatttgcaacactgccagggtaattttgtatcctctgcac
actgcagctatttgtcagggccctgcaggtgtgcaatgcacataaacaca
cagctgtggtccagcaagccaagtgttccatcaaacacataaagggagat
ctcagcagttgaattagtcatccttagaacaggtccagggagaacaatat
gggttagtatttttggaaaaattgtgaatagaaaatttatgattatgctt
atttcacaaaataactgagggattgtgtcatttcttaaagaaacatgtgc
ttacaaaatttttgttagaatagttgaagaaaagttaagtttttactttt
caatataataaaatttagatataaatttatttaagtgcaaaatgtgaaaa
gctttaaaagttaaatttgttattagaatttatattgtggttatatttat
aaaattacacatcataaatactatattttaacatagttaccagttataaa
tttagctgcataatagttaaaattctgcttttctatttatatttaagatg
aatttttagtaaaagacaataaagtttaaaattttacaccagacactata
ctacttaaagtaactgcttattacattttaatactatatacattgcatct
caatgtgaaaaaacagtttattgtctaaatgtacagaaaatatatgaaaa
tcacaatatgtgaagccccactattagcttgacttataatactctcttaa
atgttctggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_35294420_35295076
seq2: B6Ng01-129C16.b_48_704

seq1  GAATTCTAGCATACACTGAAGACCAGGTGAGGCATCTAGCCTCATGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCATACACTGAAGACCAGGTGAGGCATCTAGCCTCATGGACT  50

seq1  GAGCAGCTACTGGATTCTTGGACTTCTCACTCATAGTCAGCCATTGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTACTGGATTCTTGGACTTCTCACTCATAGTCAGCCATTGTTGG  100

seq1  ATTAGCAGGACTGCTGTTTCTAAGTCATATACACACAAATTTTGGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGGACTGCTGTTTCTAAGTCATATACACACAAATTTTGGCATAA  150

seq1  TTTCTTACACAATATTTTAAGGGGTGGGGCTGATGGCACTGCTTCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACACAATATTTTAAGGGGTGGGGCTGATGGCACTGCTTCCTTGA  200

seq1  GGGAGATAAACCCTTGAGAATCTAAAGTACTACAAAATGGTACCAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATAAACCCTTGAGAATCTAAAGTACTACAAAATGGTACCAGGAGT  250

seq1  GGTTCTAGAGCAAGAGAAGTTAAGTGTCTGGAATAGGCTTTTTTTGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGAGCAAGAGAAGTTAAGTGTCTGGAATAGGCTTTTTTTGCTAG  300

seq1  TACTCTTGGTAAAATAGCTTGACCTGTTACTGAGCCCTCTCTCTCCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGGTAAAATAGCTTGACCTGTTACTGAGCCCTCTCTCTCCTAGC  350

seq1  TCAGAAAGAACTAATAGCCCACAGTGTGAGCTACTATACAAACTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAACTAATAGCCCACAGTGTGAGCTACTATACAAACTCAAAAA  400

seq1  GATAAATACATTTGATTATCTTTTAAAAAACATTTTTTATTAGATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACATTTGATTATCTTTTAAAAAACATTTTTTATTAGATATTTT  450

seq1  CTTCATTTACATTTCAAATGCTATCAAATTTCTATACCCTCCCCCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTACATTTCAAATGCTATCAAATTTCTATACCCTCCCCCTGCCC  500

seq1  TGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCTTGGTGTTCCCCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCTTGGTGTTCCCCTGTA  550

seq1  CTGGGACATATAATCTTTGCAAGACCAAGGGCCTCTCCTCCCAATGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACATATAATCTTTGCAAGACCAAGGGCCTCTCCTCCCAATGATGG  600

seq1  CCTACTAGGCCATCTTCTGCTACATATACAGCTAGAGACATGAGCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAGGCCATCTTCTGCTACATATACAGCTAGAGACATGAGCTCTGG  650

seq1  GGTTACT  657
      |||||||
seq2  GGTTACT  657

seq1: chr15_35442829_35443965
seq2: B6Ng01-129C16.g_67_1177 (reverse)

seq1  TACCAGAACATTTAAAGAGAGTATTAATAAGGTCAAGGCTAATTAGGTTG  50
      ||||||||||||| ||||||||||| |||| ||||| ||||| |||  ||
seq2  TACCAGAACATTT-AAGAGAGTATT-ATAA-GTCAA-GCTAA-TAG--TG  43

seq1  GGGGCTTTCACATATTGGTGAATTTTCATATA-TTTCTGTAACCAATTTA  99
      |||   |||||||||| ||| ||||||||||| ||||||||    |||||
seq2  GGG--CTTCACATATT-GTG-ATTTTCATATATTTTCTGTA---CATTTA  86

seq1  GGACAATATACTTGTTTATCACATTTGAGATTGCAATGTTATAATAGTAT  149
       ||||||| |||  ||| ||||| |||||| ||||||| ||| |||||| 
seq2  -GACAATAAACTGTTTTTTCACA-TTGAGA-TGCAATG-TAT-ATAGTA-  130

seq1  TTAAAATGTAATAAAGCAGTTACTTTAAGGTAGTTAATAGTTGTCTGGTG  199
      |||||||||||| ||||||||||||||| |||||  |||| |||||||||
seq2  TTAAAATGTAAT-AAGCAGTTACTTTAA-GTAGT--ATAG-TGTCTGGTG  175

seq1  TAAAAATTTTAAACTTTATTGTCTTTTACTAAAAATTTCATCTTAAATAT  249
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  T-AAAATTTTAAACTTTATTGTCTTTTACTAAAAA-TTCATCTTAAATAT  223

seq1  AAATAGAAAAGCAGAATTTTAACTATTATGCAGCTAAATTTATAACTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAGCAGAATTTTAACTATTATGCAGCTAAATTTATAACTGGT  273

seq1  AACTATGTTAAAATATAGTATTTATGATGTGTAATTTTATAAATATAACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTTAAAATATAGTATTTATGATGTGTAATTTTATAAATATAACC  323

seq1  ACAATATAAATTCTAATAACAAATTTAACTTTTAAAGCTTTTCACATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAATTCTAATAACAAATTTAACTTTTAAAGCTTTTCACATTTT  373

seq1  GCACTTAAATAAATTTATATCTAAATTTTATTATATTGAAAAGTAAAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAAATAAATTTATATCTAAATTTTATTATATTGAAAAGTAAAAAC  423

seq1  TTAACTTTTCTTCAACTATTCTAACAAAAATTTTGTAAGCACATGTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTCTTCAACTATTCTAACAAAAATTTTGTAAGCACATGTTTCT  473

seq1  TTAAGAAATGACACAATCCCTCAGTTATTTTGTGAAATAAGCATAATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATGACACAATCCCTCAGTTATTTTGTGAAATAAGCATAATCAT  523

seq1  AAATTTTCTATTCACAATTTTTCCAAAAATACTAACCCATATTGTTCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTATTCACAATTTTTCCAAAAATACTAACCCATATTGTTCTCC  573

seq1  CTGGACCTGTTCTAAGGATGACTAATTCAACTGCTGAGATCTCCCTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTGTTCTAAGGATGACTAATTCAACTGCTGAGATCTCCCTTTAT  623

seq1  GTGTTTGATGGAACACTTGGCTTGCTGGACCACAGCTGTGTGTTTATGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGATGGAACACTTGGCTTGCTGGACCACAGCTGTGTGTTTATGTG  673

seq1  CATTGCACACCTGCAGGGCCCTGACAAATAGCTGCAGTGTGCAGAGGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACACCTGCAGGGCCCTGACAAATAGCTGCAGTGTGCAGAGGATA  723

seq1  CAAAATTACCCTGGCAGTGTTGCAAATAAGGAAGTTTCTGTTTTGAAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTACCCTGGCAGTGTTGCAAATAAGGAAGTTTCTGTTTTGAAGTC  773

seq1  CATATGTGTGTGTGCTTGAGATGCCAGCTGGTGTATTTATGTTGCATGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTGTGTGCTTGAGATGCCAGCTGGTGTATTTATGTTGCATGCA  823

seq1  CAGATGTAAAAGTGCCAACTGATTTTATACCAAATGAAGTCTAATCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAAAAGTGCCAACTGATTTTATACCAAATGAAGTCTAATCTGCT  873

seq1  TCTATGTACTTTGTGTCAAAGTTATGAAGTGGTATGAATGTTCTTACAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTACTTTGTGTCAAAGTTATGAAGTGGTATGAATGTTCTTACAAC  923

seq1  TTAGGTCTTTCAGAATAAAAGCTGCTATTAAAACTTTGAATGTAGGGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTTTCAGAATAAAAGCTGCTATTAAAACTTTGAATGTAGGGGCA  973

seq1  TGAGAGAATTGAGGATAGTAATATAATGAAAATTATTGCTACACCATTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATTGAGGATAGTAATATAATGAAAATTATTGCTACACCATTAG  1023

seq1  GTAAATAAATACAGTCTTGATTTATTATAACCATTAATGATGTGTATCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATACAGTCTTGATTTATTATAACCATTAATGATGTGTATCCT  1073

seq1  CTTTTGTGGCTAGCACAAATTGGCTCTGTGTTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGGCTAGCACAAATTGGCTCTGTGTTGAATTC  1111