BAC Information

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BAC

Clone NameB6Ng01-129H09
Chromosome15 (Build37)
Map Location 57,616,440 - 57,752,047
singlet/doubletdoublet
Overlap geneZhx2, Derl1, Wdr67
Upstream geneLOC100040067, LOC100039984, BC026439
Downstream geneBC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129H09.bB6Ng01-129H09.g
ACCDH931038DH931039
length9761,102
definitionDH931038|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H09, 5' end.DH931039|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,616,440 - 57,617,413)(57,750,937 - 57,752,047)
sequence
gaattccaagttgccaggctgccagccaaagtgcagctttctttaaagac
tgtaagtcctgcctctgtcccaccaccctccttctctctttttcttctgt
cttactgatactcagagcagttcccccccaggcatacatttagtggggtg
tctattgtagtggtgaaacaccatgaccaaaatcaagaagtccatcatcc
agggaagagggggtggagcaactcaaggacgaaatctgagggcaagaacc
catgctaaggtcttagaggagttttgcttactcacttgctcttgatggct
tgctcaaccagtgttcttatagcacccaggagaacaagcctaggggtgac
actaccccgttgtaagatgggcctgcctgcatcaatcattagtcaagaaa
atgccccacagaccaatcttatggagaccttttctcaattaagattcctc
tttcccagatgaccccagcttgtgtcaagttgacataaaaactggacagt
gcagagcttctttcttcatctctgctcaaagaccctgatacatagacctg
cttggatcctgggtgttcagcacatacatacttggttaatgatcacattc
catattgtcttccttcccaccttccagctgagattctctgtatatccctg
gctgtcctggaacttactctgtagacctgcctctgcctctgcctctgcct
ctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctct
gcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgc
ctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcct
ctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgctctg
cttctgcctctgcctttgcctctgcctctgcctctgcctttgctcccaag
agtagaaataaaagataagtaaccac
gaattcaacctcatagacaatacatcaaccctgatgataatggggtgaga
gatgttacagtcagattgccctcacatgtacacataggcagtaatgcaat
taactatgtctgcatgcaagagcctcaggtaaaattcttgacaccaaagc
ttgaggaaccctcctacctcagtcatagccagcagagtctctgcatgtat
gttgggaagacatagaagcatccttagaagtctcccagatcctaccctac
gcacctctctcattggctggctctcatatatgtatcctgtattaaggctg
gagtcagtcacatgtacaatgatttcttaagtcgtgtgagcaaccttgaa
cagactgctcctgaggcaacacagactgggaggaccttgcagtctgctgg
gctgtgttttagtcagcttcagaaggcaaacaggaggacttcttacctgt
atcaaaacatttaatagaataatcagctaacgccacaaggaactcagact
ttctacgaagattaaaggccagagctgtgcacgcttgtgctgttcgctga
acaagattaaacctattaagaaatggctgtattagtatcaggaagtctac
cagtggtcacaaactttacagtggtggagttctcagaggggaaaaggaga
cctaaaaatggtgggctaaaaccagacagaagatctgagagctccactgt
gaataatcagaggattcctgccacgtgcaaaatgccagggctacaattac
ctctctctctctcaagagccatgctaaggacactgggttccacttctaca
actgggaagtcttgttaagtttttaatttttttgttattatttgttaatt
tggggagccatttgtttaggtttcttgtaattttagcatagcaaaaatta
cactagccatgtcttttaaaaggatgcttctgggaagcaagacaactgac
agatggaggacagagaagaaaaggcagttactgtgaagccactagggaga
cctcacccagagatacagcacacgtgaggatgccaggagggcctgtgtta
agctgaaaaaaacaggaatgcattaaccatgggcagaggaagacagggtt
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_57616440_57617413
seq2: B6Ng01-129H09.b_49_1024

seq1  GAATTCCAAGTTGCCAGGCTGCCAGCCAAAGTGCAGCTTTCTTTAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTGCCAGGCTGCCAGCCAAAGTGCAGCTTTCTTTAAAGAC  50

seq1  TGTAAGTCCTGCCTCTGTCCCACCACCCTCCTTCTCTCTTTTTCTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCCTGCCTCTGTCCCACCACCCTCCTTCTCTCTTTTTCTTCTGT  100

seq1  CTTACTGATACTCAGAGCAGTTCCCCCCCAGGCATACATTTAGTGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGATACTCAGAGCAGTTCCCCCCCAGGCATACATTTAGTGGGGTG  150

seq1  TCTATTGTAGTGGTGAAACACCATGACCAAAATCAAGAAGTCCATCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTAGTGGTGAAACACCATGACCAAAATCAAGAAGTCCATCATCC  200

seq1  AGGGAAGAGGGGGTGGAGCAACTCAAGGACGAAATCTGAGGGCAAGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGGGGGTGGAGCAACTCAAGGACGAAATCTGAGGGCAAGAACC  250

seq1  CATGCTAAGGTCTTAGAGGAGTTTTGCTTACTCACTTGCTCTTGATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAGGTCTTAGAGGAGTTTTGCTTACTCACTTGCTCTTGATGGCT  300

seq1  TGCTCAACCAGTGTTCTTATAGCACCCAGGAGAACAAGCCTAGGGGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACCAGTGTTCTTATAGCACCCAGGAGAACAAGCCTAGGGGTGAC  350

seq1  ACTACCCCGTTGTAAGATGGGCCTGCCTGCATCAATCATTAGTCAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCGTTGTAAGATGGGCCTGCCTGCATCAATCATTAGTCAAGAAA  400

seq1  ATGCCCCACAGACCAATCTTATGGAGACCTTTTCTCAATTAAGATTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCACAGACCAATCTTATGGAGACCTTTTCTCAATTAAGATTCCTC  450

seq1  TTTCCCAGATGACCCCAGCTTGTGTCAAGTTGACATAAAAACTGGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGATGACCCCAGCTTGTGTCAAGTTGACATAAAAACTGGACAGT  500

seq1  GCAGAGCTTCTTTCTTCATCTCTGCTCAAAGACCCTGATACATAGACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTCTTTCTTCATCTCTGCTCAAAGACCCTGATACATAGACCTG  550

seq1  CTTGGATCCTGGGTGTTCAGCACATACATACTTGGTTAATGATCACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATCCTGGGTGTTCAGCACATACATACTTGGTTAATGATCACATTC  600

seq1  CATATTGTCTTCCTTCCCACCTTCCAGCTGAGATTCTCTGTATATCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTCTTCCTTCCCACCTTCCAGCTGAGATTCTCTGTATATCCCTG  650

seq1  GCTGTCCTGGAACTTACTCTGTAGACCTGCCTCTGCCTCTGCCTCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTTACTCTGTAGACCTGCCTCTGCCTCTGCCTCTGCCT  700

seq1  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCT  750

seq1  GCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC  800

seq1  CTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  850

seq1  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG-CTCT  899

seq1  GCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC-----CTCCCAA  945
      || ||||||||||||| |||||||||||||||||||||     |||||||
seq2  GCTTCTGCCTCTGCCTTTGCCTCTGCCTCTGCCTCTGCCTTTGCTCCCAA  949

seq1  GTGCTGGAATTAAAGGAGTAAGTAACCAC  974
      | | | ||| |||| || |||||||||||
seq2  GAG-TAGAAATAAAAGA-TAAGTAACCAC  976

seq1: chr15_57750937_57752047
seq2: B6Ng01-129H09.g_71_1172 (reverse)

seq1  GAAACTCCTGTTCTTCCTCTTGCCCTGTGTTTAATGCATCCCTGGTCTCT  50
      ||||| |||| |||||||| |||||  || ||||||||| ||| || | |
seq2  GAAAC-CCTG-TCTTCCTC-TGCCC-ATGGTTAATGCATTCCT-GTTTTT  45

seq1  CTCAGCTTAACACAGCCCCTCCTGTGCATCCTCACTGTGTGCCTGTATCT  100
       |||||||||||||| |||||||| |||||||||| ||||| ||||||||
seq2  TTCAGCTTAACACAGGCCCTCCTG-GCATCCTCAC-GTGTG-CTGTATCT  92

seq1  CTGGGTGAGGTCTTCCCTAGTTGCTTTCACAGTAACTGCCTTTTCTTCTC  150
      |||||||||||| |||||||| || |||||||||||||||||||||||||
seq2  CTGGGTGAGGTC-TCCCTAGTGGC-TTCACAGTAACTGCCTTTTCTTCTC  140

seq1  TGTCCCTCCATCTGTCAGTTGTCTTTGCTT-CCAGAAGCATCCTTCTAAA  199
      ||| ||||||||||||||||||| |||||| |||||||||||||| ||||
seq2  TGT-CCTCCATCTGTCAGTTGTC-TTGCTTCCCAGAAGCATCCTTTTAAA  188

seq1  AGACATGGCTAGTTGTAATTTTTGCTATGCT-AAATTAACAGAAACTTAA  248
      |||||||||||| |||||||||||||||||| ||||||  |||||| |||
seq2  AGACATGGCTAG-TGTAATTTTTGCTATGCTAAAATTACAAGAAACCTAA  237

seq1  --CAATGGCTCCCC-AATTAACAAATTATTAACAAAAAAATTAAAAACTT  295
         ||||||||||| |||||||||| || |||||||||||||||||||||
seq2  ACAAATGGCTCCCCAAATTAACAAA-TAATAACAAAAAAATTAAAAACTT  286

seq1  AACAAGACTTCCCAGTTGTAGAAGTGGAACCCAGTGTCCTTAGCATGGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACTTCCCAGTTGTAGAAGTGGAACCCAGTGTCCTTAGCATGGCT  336

seq1  CCTGAGAGAGAGAGAGGTAATTGTAGCCCTGGCATTTTGCACGTGGCAGG  395
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGAGAGAGAGGTAATTGTAGCCCTGGCATTTTGCACGTGGCAGG  386

seq1  AATCCTCTGATTATTCACAGTGGAGCTCTCAGATCTTCTGTCTGGTTTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTGATTATTCACAGTGGAGCTCTCAGATCTTCTGTCTGGTTTTA  436

seq1  GCCCACCATTTTTAGGTCTCCTTTTCCCCTCTGAGAACTCCACCACTGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCATTTTTAGGTCTCCTTTTCCCCTCTGAGAACTCCACCACTGTA  486

seq1  AAGTTTGTGACCACTGGTAGACTTCCTGATACTAATACAGCCATTTCTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTGACCACTGGTAGACTTCCTGATACTAATACAGCCATTTCTTA  536

seq1  ATAGGTTTAATCTTGTTCAGCGAACAGCACAAGCGTGCACAGCTCTGGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTAATCTTGTTCAGCGAACAGCACAAGCGTGCACAGCTCTGGCC  586

seq1  TTTAATCTTCGTAGAAAGTCTGAGTTCCTTGTGGCGTTAGCTGATTATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTCGTAGAAAGTCTGAGTTCCTTGTGGCGTTAGCTGATTATTC  636

seq1  TATTAAATGTTTTGATACAGGTAAGAAGTCCTCCTGTTTGCCTTCTGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATGTTTTGATACAGGTAAGAAGTCCTCCTGTTTGCCTTCTGAAG  686

seq1  CTGACTAAAACACAGCCCAGCAGACTGCAAGGTCCTCCCAGTCTGTGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAAAACACAGCCCAGCAGACTGCAAGGTCCTCCCAGTCTGTGTTG  736

seq1  CCTCAGGAGCAGTCTGTTCAAGGTTGCTCACACGACTTAAGAAATCATTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAGCAGTCTGTTCAAGGTTGCTCACACGACTTAAGAAATCATTG  786

seq1  TACATGTGACTGACTCCAGCCTTAATACAGGATACATATATGAGAGCCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGACTGACTCCAGCCTTAATACAGGATACATATATGAGAGCCAG  836

seq1  CCAATGAGAGAGGTGCGTAGGGTAGGATCTGGGAGACTTCTAAGGATGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGAGAGGTGCGTAGGGTAGGATCTGGGAGACTTCTAAGGATGCT  886

seq1  TCTATGTCTTCCCAACATACATGCAGAGACTCTGCTGGCTATGACTGAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTTCCCAACATACATGCAGAGACTCTGCTGGCTATGACTGAGG  936

seq1  TAGGAGGGTTCCTCAAGCTTTGGTGTCAAGAATTTTACCTGAGGCTCTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGTTCCTCAAGCTTTGGTGTCAAGAATTTTACCTGAGGCTCTTG  986

seq1  CATGCAGACATAGTTAATTGCATTACTGCCTATGTGTACATGTGAGGGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGACATAGTTAATTGCATTACTGCCTATGTGTACATGTGAGGGCA  1036

seq1  ATCTGACTGTAACATCTCTCACCCCATTATCATCAGGGTTGATGTATTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTGTAACATCTCTCACCCCATTATCATCAGGGTTGATGTATTGT  1086

seq1  CTATGAGGTTGAATTC  1111
      ||||||||||||||||
seq2  CTATGAGGTTGAATTC  1102