BAC Information

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BAC

Clone NameB6Ng01-129I16
Chromosome15 (Build37)
Map Location 13,399,070 - 13,532,035
singlet/doubletdoublet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I16.bB6Ng01-129I16.g
ACCDH931096DH931097
length1,172869
definitionDH931096|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I16, 5' end.DH931097|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,399,070 - 13,400,250)(13,531,167 - 13,532,035)
sequence
gaattcattttggcaggtgctagggtttttcattctttgacatttctgtt
atttttccattgcttcatacagacatagtgatttaattttatcaactatt
ttcagttccttaaacctatagccacatcatattaaagaaggtagtctgtg
gggaagtgcactctgcatattgttgtattgctttggaaattccaagtttt
aagagcattttaatctatttggaatttcatgtattatttttaatacattt
ccaaaattattgattaaggagtctaaactttacagcttcagctctctgtt
agtacacagcaaggtgaactctttggaaaccacaggagttgcctggcacc
cgagacattccagaacattcccagtaattgtcactcagctggtgttcaat
gcggccatgattttgaaatgtgtaaagtaaaaaaggaagtatttgaggtt
aagtaaatatcaaataaggatagttttgttattgtgactgatgcttccaa
gtcagtattacagagaaaattaattccctttgagggcaacatacagagag
ctcatggcatagagacaggtaggggatgaagctcaatgtacttagatgaa
cagaaagcttaaatgagtaggagttgtttctcacagattagtgtgagaga
acagagccacacaagttcttttgtaagttaacagaagactatgaaatata
ttcttactcagttatagattctgtgtcaaatctgctaaaatagctattca
gttgaatttactatacttcattaatatatgactgtttcatatatatatat
tatatataatacatataacatataatatataatatatatgtatacataca
tatacacaaatacacatacaaaatcttttacttgtatctaagcattgcat
gtttgtatggataaaataatagtaaactaaatttctgtttacatatttct
taatattcactgtcctttatgaaatagtatgcatcatgtttttgatgcat
ttttaaacataactgaaaagaattctagacatatttcccaggtaattctt
cctctgatataatgggggtatactgctcataaatcctttccaagatatgt
gctcaggatttaccaccgccccctgctgtgtttcatatacattccggact
ataaattctccttgtgctctca
gaattcatctccagtgtacaaagagctaaggcacagctccctattccaac
atgactcaaggctctgccttaaaaaaaaaaaaaagaaaagaaaagaggag
aaaagaatggagggaaagatggcagtagggagaagacagatagcattttt
ttaaaaatagcaagcaaatacataggctatgccagaatcattattcatta
aagaaatagtgagtggggttttactatgtcccgagcatggcataggctaa
agagatagcagtgggggaagggccaaaacatcaggcctgtcctcaagggg
gtaccatcaatgacagtacattttctgttaggaaatgtgcctttaaggag
ctagaaagccatctggggatgatattaaagcaaattccagagtttggatg
aattggactatgaagtgttggattttgattgcagccttacaactttatgc
ttttcctttgcaaggggctcacatccacttttggactgatgatctaggtc
agatagataggggcctgggtagcaggaaggggtggtggtggcgatggctt
tcattccaggacgtttttccgtgagttaaatcagatatgctattttgtag
ggtgttcaccattggatttttctttcccctctagactaggctgacctcaa
aggcaaatgacatatttcttctctgtgtctgcagtgccgcttagtcccta
atgacaccacagcaatagaacaaggagactcaaataatgtctatttttgg
agaaaactcaggctttatcactttttttttgaaggtgacatagaaagtag
gggcaagactaatcacaggtagatttaatttaaagaagaggggggggaac
cttttcatataacagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13399070_13400250
seq2: B6Ng01-129I16.b_50_1221

seq1  GAATTCATTTTGGCAGGTGCTAGGGTTTTTCATTCTTTGACATTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGCAGGTGCTAGGGTTTTTCATTCTTTGACATTTCTGTT  50

seq1  ATTTTTCCATTGCTTCATACAGACATAGTGATTTAATTTTATCAACTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCATTGCTTCATACAGACATAGTGATTTAATTTTATCAACTATT  100

seq1  TTCAGTTCCTTAAACCTATAGCCACATCATATTAAAGAAGGTAGTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTTAAACCTATAGCCACATCATATTAAAGAAGGTAGTCTGTG  150

seq1  GGGAAGTGCACTCTGCATATTGTTGTATTGCTTTGGAAATTCCAAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGCACTCTGCATATTGTTGTATTGCTTTGGAAATTCCAAGTTTT  200

seq1  AAGAGCATTTTAATCTATTTGGAATTTCATGTATTATTTTTAATACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTTTAATCTATTTGGAATTTCATGTATTATTTTTAATACATTT  250

seq1  CCAAAATTATTGATTAAGGAGTCTAAACTTTACAGCTTCAGCTCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTATTGATTAAGGAGTCTAAACTTTACAGCTTCAGCTCTCTGTT  300

seq1  AGTACACAGCAAGGTGAACTCTTTGGAAACCACAGGAGTTGCCTGGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAGCAAGGTGAACTCTTTGGAAACCACAGGAGTTGCCTGGCACC  350

seq1  CGAGACATTCCAGAACATTCCCAGTAATTGTCACTCAGCTGGTGTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACATTCCAGAACATTCCCAGTAATTGTCACTCAGCTGGTGTTCAAT  400

seq1  GCGGCCATGATTTTGAAATGTGTAAAGTAAAAAAGGAAGTATTTGAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCATGATTTTGAAATGTGTAAAGTAAAAAAGGAAGTATTTGAGGTT  450

seq1  AAGTAAATATCAAATAAGGATAGTTTTGTTATTGTGACTGATGCTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATATCAAATAAGGATAGTTTTGTTATTGTGACTGATGCTTCCAA  500

seq1  GTCAGTATTACAGAGAAAATTAATTCCCTTTGAGGGCAACATACAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTACAGAGAAAATTAATTCCCTTTGAGGGCAACATACAGAGAG  550

seq1  CTCATGGCATAGAGACAGGTAGGGGATGAAGCTCAATGTACTTAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCATAGAGACAGGTAGGGGATGAAGCTCAATGTACTTAGATGAA  600

seq1  CAGAAAGCTTAAATGAGTAGGAGTTGTTTCTCACAGATTAGTGTGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTTAAATGAGTAGGAGTTGTTTCTCACAGATTAGTGTGAGAGA  650

seq1  ACAGAGCCACACAAGTTCTTTTGTAAGTTAACAGAAGACTATGAAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCACACAAGTTCTTTTGTAAGTTAACAGAAGACTATGAAATATA  700

seq1  TTCTTACTCAGTTATAGATTCTGTGTCAAATCTGCTAAAATAGCTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTCAGTTATAGATTCTGTGTCAAATCTGCTAAAATAGCTATTCA  750

seq1  GTTGAATTTACTATACTTCATTAATATATGACTGTTTCATATATATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTACTATACTTCATTAATATATGACTGTTTCATATATATATAT  800

seq1  TATATATAATACATATAACATATAATATATAATATATATGTATACATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAATACATATAACATATAATATATAATATATATGTATACATACA  850

seq1  TATACACAAATACACATACAAAATCTTTTACTTGTATCTAAGCATTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAATACACATACAAAATCTTTTACTTGTATCTAAGCATTGCAT  900

seq1  GTTTGTATGGATAAAATAATAGTAAACTAAATTTCTGTTTACATATTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTTGTATGGATAAAATAATAGTAAACTAAATTTCTGTTTACATATTTC-  949

seq1  TTAATATTCACTGTCCTTTATGAAATAAGTATGCATCATGTTTTTGATGC  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAATATTCACTGTCCTTTATGAAAT-AGTATGCATCATGTTTTTGATGC  998

seq1  ATTTTTAAAACATAACTGATAAGAA-TCTAGACATAATTTCCCAGGTAAT  1049
      |||||| |||||||||||| ||||| ||||||||| ||||||||||||||
seq2  ATTTTT-AAACATAACTGAAAAGAATTCTAGACAT-ATTTCCCAGGTAAT  1046

seq1  TCTTCCTCTGAATTATAATGGGAGTATACTGCTCATAAATCCTTTACAAA  1099
      |||||||||||  ||||||||| |||||||||||||||||||||| |  |
seq2  TCTTCCTCTGA--TATAATGGGGGTATACTGCTCATAAATCCTTTCC--A  1092

seq1  AGATATGTGCTCAGATATTACCACCGCCCCCTGCTTGTTTTCAATATACA  1149
      ||||||||||||||   ||||||||||||||||| ||| ||  |||||||
seq2  AGATATGTGCTCAGGATTTACCACCGCCCCCTGC-TGTGTTTCATATACA  1141

seq1  TT-CGGACTATTAAATTTCTCCTGTGGCTCTCA  1181
      || ||||||||  || |||||||   |||||||
seq2  TTCCGGACTAT--AAATTCTCCTTGTGCTCTCA  1172

seq1: chr15_13531167_13532035
seq2: B6Ng01-129I16.g_71_939 (reverse)

seq1  TTCTCTGTTTTATGAAAAGGTTCCCCCCCCTCTCTTTTAAATCTAATCTT  50
      ||||||||| |||||||||||||||||||||||  |||||||  |||| |
seq2  TTCTCTGTTATATGAAAAGGTTCCCCCCCCTCTTCTTTAAATTAAATC-T  49

seq1  ACCTGTGATTAGTCTTG-CCCTACTTTCCTATGTCACCTTCAAAAAAAAA  99
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  ACCTGTGATTAGTCTTGCCCCTACTTT-CTATGTCACCTTCAAAAAAAAA  98

seq1  GTGATAAAGCCTGAGTTTTCTCCAAAAATAGACATTATTTGAGTCTCCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAAGCCTGAGTTTTCTCCAAAAATAGACATTATTTGAGTCTCCTT  148

seq1  GTTCTATTGCTGTGGTGTCATTAGGGACTAAGCGGCACTGCAGACACAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTGCTGTGGTGTCATTAGGGACTAAGCGGCACTGCAGACACAGA  198

seq1  GAAGAAATATGTCATTTGCCTTTGAGGTCAGCCTAGTCTAGAGGGGAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATATGTCATTTGCCTTTGAGGTCAGCCTAGTCTAGAGGGGAAAG  248

seq1  AACAATCCAATGGTGAACACCCTACAAAATAGCATATCTGATTTAACTCA  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAATGGTGAACACCCTACAAAATAGCATATCTGATTTAACTCA  298

seq1  CGG-AAAACGTCCTGGAATGAAAGCCATCGCCACCACCACCCCTTCCTGC  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAAACGTCCTGGAATGAAAGCCATCGCCACCACCACCCCTTCCTGC  348

seq1  TACCCAGGCCCCTATCTATCTGACCTAGATCATCAGTCCAAAAGTGGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGCCCCTATCTATCTGACCTAGATCATCAGTCCAAAAGTGGATG  398

seq1  TGAGCCCCTTGCAAAGGAAAAGCATAAAGTTGTAAGGCTGCAATCAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCTTGCAAAGGAAAAGCATAAAGTTGTAAGGCTGCAATCAAAAT  448

seq1  CCAACACTTCATAGTCCAATTCATCCAAACTCTGGAATTTGCTTTAATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTTCATAGTCCAATTCATCCAAACTCTGGAATTTGCTTTAATAT  498

seq1  CATCCCCAGATGGCTTTCTAGCTCCTTAAAGGCACATTTCCTAACAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGATGGCTTTCTAGCTCCTTAAAGGCACATTTCCTAACAGAAA  548

seq1  ATGTACTGTCATTGATGGTACCCCCTTGAGGACAGGCCTGATGTTTTGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGTCATTGATGGTACCCCCTTGAGGACAGGCCTGATGTTTTGGC  598

seq1  CCTTCCCCCACTGCTATCTCTTTAGCCTATGCCATGCTCGGGACATAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCACTGCTATCTCTTTAGCCTATGCCATGCTCGGGACATAGTA  648

seq1  AAACCCCACTCACTATTTCTTTAATGAATAATGATTCTGGCATAGCCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACTCACTATTTCTTTAATGAATAATGATTCTGGCATAGCCTAT  698

seq1  GTATTTGCTTGCTATTTTTAAAAAAATGCTATCTGTCTTCTCCCTACTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCTTGCTATTTTTAAAAAAATGCTATCTGTCTTCTCCCTACTGC  748

seq1  CATCTTTCCCTCCATTCTTTTCTCCTCTTTTCTTTTCTTTTTTTTTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCCCTCCATTCTTTTCTCCTCTTTTCTTTTCTTTTTTTTTTTTT  798

seq1  TAAGGCAGAGCCTTGAGTCATGTTGGAATAGGGAGCTGTGCCTTAGCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGAGCCTTGAGTCATGTTGGAATAGGGAGCTGTGCCTTAGCTCT  848

seq1  TTGTACACTGGGGATGAATTC  869
      ||||||||||| |||||||||
seq2  TTGTACACTGGAGATGAATTC  869