BAC Information

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BAC

Clone NameB6Ng01-129O19
Chromosome15 (Build37)
Map Location 82,950,798 - 83,119,404
singlet/doubletdoublet
Overlap geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt
Upstream geneMei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
Downstream geneLOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129O19.bB6Ng01-129O19.g
ACCDH931384DH931385
length1,063898
definitionDH931384|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O19, 5' end.DH931385|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,118,346 - 83,119,404)(82,950,798 - 82,951,950)
sequence
gaattccacagctcagagcgatgctgggaacagaaatgcaggcaagagaa
tgcaaactcaggccagctaaggtgcagtcacagctgatgcagggaggagc
caggaggggaccacatggggaccacactgacctcgcagggtcgaccctgc
ctggttcccagctcagtgaccctggaaccacgtggtcggcaggtgtggat
gtggtgagaccctctctgggctctaatgcttcatacacattcccacaagg
ccacgttcatccatcctgggggtctggagacgggttgctgatgagtgcta
ttgttataatttgatatttatatgagaactctgcctgctcacagatcagt
ggactctgggaagtgatttcatagcacagatgggctttctctgacacact
ctctcgccacacaatgtccactgaatacagaagcccagacagaagatcat
gaaggggccagcactgttgccctgaacttcccagcctcaagaacactgag
taagtacatttctttttgtttttgtttattttcagacgttgtttctctgt
gtaaccctggagtcctggaacccactctgtgggtcaggctggccttgatc
cacgtgcctcggtgtgcagcaccacagcctgggagtaaattttttttttt
aagtaaataaccccatcttcaatactagctttacagcaacagaaatggac
tgagataccaagaaaatttgtacaggtcacctgatgccctccccataaaa
acaaacaaacaaataataacaatagcagcaacaataatgattctatccag
tacaaaacactgatcccaataccaaaggcagagagatacccaaactgtaa
agatgacatttcctgccccatctctccaggactagtgtggcagccacact
gtggtgggtaaggtcttgtctcatgatggaataaggaatgcttactcctt
acagcctgaactatggtctttcctaaggtcttgactccaggtacctcagt
cagtgaactgcatctggaacataataaaggaagcaactgaagggaaatct
ggccctgtggctg
gaattcagtctgtacccaaaatgggccctggaccaccaccaccaccaaca
ccatcactacttttcttcatcttcttttttggcaacaagtgacataccat
caatttttaaaaaaagatttacgtattttatgtatagtagtgctctatct
gcatgtacacctacatgccagaaaagggcatcagatcctattacacatgg
ttgtgagccaccatgtggttgctgagaattgaacttaggatctctgggag
aatagccagtgcccttaactgcagagccatctctccagccccagtcttga
acttctgatcttcctgtcctcaaaatctgatttatgtggtcctggggact
gaacccagggcttcataatattaggccagcactctgccactgaactacac
cataataataataataataataataataataataataataaaaaatccca
tcaggcaccgtgattcatagctgaaatcccagaactcatgggatgtgttg
tgtccatgtatgtggggtagatatctaggagttcgaagccagccttgact
acacaatgacttccaggatagccagggctactacatttaggagaccaaga
aataaagaaaaaaaggggggtggagtggggcgaatcatctcaaacttagc
aaatcatgtcttcctgtcattttacataatatgtaagtctgagatgtaga
gagctggcctcttttggaaatgccctggggctctatctccaatacaacaa
gtaaataaacctttaaaaaaaatttttttgagctttttctggtttctctg
ggtagccctcactttttctgtaactttgcttctgtagaccactaggctgg
gcctcaaactcagagatccaaaacttgcctctgcttctgaatggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83118346_83119404
seq2: B6Ng01-129O19.b_49_1111 (reverse)

seq1  CAGCCACAGGGCCAGATTTCCC-TCAGTTGCTTCC-TTATTATGTTCCAG  48
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  CAGCCACAGGGCCAGATTTCCCTTCAGTTGCTTCCTTTATTATGTTCCAG  50

seq1  ATGCAG-TCACTGGCTGAGGTACCTGGAGTCAGGACCTTAGG-AAGACCA  96
      |||||| |||||| |||||||||||||||||| ||||||||| |||||||
seq2  ATGCAGTTCACTGACTGAGGTACCTGGAGTCAAGACCTTAGGAAAGACCA  100

seq1  TAGTTCAGGCTGTAAGGAGTAGGCATTCCTTATTCCATCATGAGACAAGA  146
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGTTCAGGCTGTAAGGAGTAAGCATTCCTTATTCCATCATGAGACAAGA  150

seq1  CCTTACCCACCACAGTGTGGCTGCCACACTAGTCCTGGAGAGATGGGGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCACCACAGTGTGGCTGCCACACTAGTCCTGGAGAGATGGGGCA  200

seq1  GGAAATGTCATCTTTACAGTTTGGGTATCTCTCTGCCTTTGGTATTGGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTCATCTTTACAGTTTGGGTATCTCTCTGCCTTTGGTATTGGGA  250

seq1  TCAGTGTTTTGTACTGGATAGAATCATTATTGTTGCTGCTATTGTTATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTTGTACTGGATAGAATCATTATTGTTGCTGCTATTGTTATTA  300

seq1  TTTGTTTGTTTGTTTTTATGGGGAGGGCATCAGGTGACCTGTACAAATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTTATGGGGAGGGCATCAGGTGACCTGTACAAATTT  350

seq1  TCTTGGTATCTCAGTCCATTTCTGTTGCTGTAAAGCTAGTATTGAAGATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTATCTCAGTCCATTTCTGTTGCTGTAAAGCTAGTATTGAAGATG  400

seq1  GGGTTATTTACTTAAAAAAAAAAATTTACTCCCAGGCTGTGGTGCTGCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTTACTTAAAAAAAAAAATTTACTCCCAGGCTGTGGTGCTGCAC  450

seq1  ACCGAGGCACGTGGATCAAGGCCAGCCTGACCCACAGAGTGGGTTCCAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGCACGTGGATCAAGGCCAGCCTGACCCACAGAGTGGGTTCCAGG  500

seq1  ACTCCAGGGTTACACAGAGAAACAACGTCTGAAAATAAACAAAAACAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGGTTACACAGAGAAACAACGTCTGAAAATAAACAAAAACAAAA  550

seq1  AGAAATGTACTTACTCAGTGTTCTTGAGGCTGGGAAGTTCAGGGCAACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTACTTACTCAGTGTTCTTGAGGCTGGGAAGTTCAGGGCAACAG  600

seq1  TGCTGGCCCCTTCATGATCTTCTGTCTGGGCTTCTGTATTCAGTGGACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCCCTTCATGATCTTCTGTCTGGGCTTCTGTATTCAGTGGACAT  650

seq1  TGTGTGGCGAGAGAGTGTGTCAGAGAAAGCCCATCTGTGCTATGAAATCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCGAGAGAGTGTGTCAGAGAAAGCCCATCTGTGCTATGAAATCA  700

seq1  CTTCCCAGAGTCCACTGATCTGTGAGCAGGCAGAGTTCTCATATAAATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGAGTCCACTGATCTGTGAGCAGGCAGAGTTCTCATATAAATAT  750

seq1  CAAATTATAACAATAGCACTCATCAGCAACCCGTCTCCAGACCCCCAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAACAATAGCACTCATCAGCAACCCGTCTCCAGACCCCCAGGA  800

seq1  TGGATGAACGTGGCCTTGTGGGAATGTGTATGAAGCATTAGAGCCCAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAACGTGGCCTTGTGGGAATGTGTATGAAGCATTAGAGCCCAGAG  850

seq1  AGGGTCTCACCACATCCACACCTGCCGACCACGTGGTTCCAGGGTCACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCACCACATCCACACCTGCCGACCACGTGGTTCCAGGGTCACTG  900

seq1  AGCTGGGAACCAGGCAGGGTCGACCCTGCGAGGTCAGTGTGGTCCCCATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGAACCAGGCAGGGTCGACCCTGCGAGGTCAGTGTGGTCCCCATG  950

seq1  TGGTCCCCTCCTGGCTCCTCCCTGCATCAGCTGTGACTGCACCTTAGCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCTCCTGGCTCCTCCCTGCATCAGCTGTGACTGCACCTTAGCTG  1000

seq1  GCCTGAGTTTGCATTCTCTTGCCTGCATTTCTGTTCCCAGCATCGCTCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTTTGCATTCTCTTGCCTGCATTTCTGTTCCCAGCATCGCTCTG  1050

seq1  AGCTGTGGAATTC  1059
      |||||||||||||
seq2  AGCTGTGGAATTC  1063

seq1: chr15_82950798_82951950
seq2: B6Ng01-129O19.g_71_968

seq1  GAATTCAGTCTGTACCCAAAATGGGCCCTGGACCACCACCACCACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGTACCCAAAATGGGCCCTGGACCACCACCACCACCAACA  50

seq1  CCACCACTACTTTTCTTCATCTTCTTTTTTGGCAACAAGTGACATACCAT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTACTTTTCTTCATCTTCTTTTTTGGCAACAAGTGACATACCAT  100

seq1  CAATTTTTAAAAAAAGATTTACGTATTTTATGTATAGTAGTGCTCTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTAAAAAAAGATTTACGTATTTTATGTATAGTAGTGCTCTATCT  150

seq1  GCATGTACACCTACATGCCAGAAAAGGGCATCAGATCCTATTACACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACACCTACATGCCAGAAAAGGGCATCAGATCCTATTACACATGG  200

seq1  TTGTGAGCCACCATGTGGTTGCTGAGAATTGAACTTAGGATCTCTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATGTGGTTGCTGAGAATTGAACTTAGGATCTCTGGGAG  250

seq1  AATAGCCAGTGCCCTTAACTGCAGAGCCATCTCTCCAGCCCCAGTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAGTGCCCTTAACTGCAGAGCCATCTCTCCAGCCCCAGTCTTGA  300

seq1  ACTTCTGATCTTCCTGTCCTCAAAATCTGATTTATGTGGTCCTGGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGATCTTCCTGTCCTCAAAATCTGATTTATGTGGTCCTGGGGACT  350

seq1  GAACCCAGGGCTTCATAATATTAGGCCAGCACTCTGCCACTGAACTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGGGCTTCATAATATTAGGCCAGCACTCTGCCACTGAACTACAC  400

seq1  CATAATAATAATAATAATAATAATAATAATAATAATAATAAAAAATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAATAATAATAATAATAATAATAATAATAATAATAAAAAATCCCA  450

seq1  TCAGGCACCGTGATTCATAGCTGAAATCCCAGAACTCATGGGATGTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACCGTGATTCATAGCTGAAATCCCAGAACTCATGGGATGTGTTG  500

seq1  TGTCCATGTATGTGGGGTAGATATCTAGGAGTTCGAAGCCAGCCTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTATGTGGGGTAGATATCTAGGAGTTCGAAGCCAGCCTTGACT  550

seq1  ACACAATGACTTCCAGGATAGCCAGGGCTACTACA-TTAGGAGACCAAGA  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACAATGACTTCCAGGATAGCCAGGGCTACTACATTTAGGAGACCAAGA  600

seq1  AATAAAGAAAAAAA-GGGGGTGGAGTGGGGCGAATCATCTCAAACTTAGC  648
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAAAAAGGGGGGTGGAGTGGGGCGAATCATCTCAAACTTAGC  650

seq1  AAATCATGTC-TCCTGTCA-TTTACATAATATGTAAGTCTGAGATGTAGA  696
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  AAATCATGTCTTCCTGTCATTTTACATAATATGTAAGTCTGAGATGTAGA  700

seq1  GAGCTGGCCTCTTTTGGAAATGCCCT-GGGCTCTATCTCCAATACAACAA  745
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGCTGGCCTCTTTTGGAAATGCCCTGGGGCTCTATCTCCAATACAACAA  750

seq1  GTAAATAAACCTTTAAAAAAAATTTTTTTGAGCTTTTTCTGGTTTCTCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAACCTTTAAAAAAAATTTTTTTGAGCTTTTTCTGGTTTCTCTG  800

seq1  GTTAGCCCTCAC-TGTCCTGGAAC-TCGC-TCTGTAGACCACCAGGCT-G  841
      | |||||||||| | | ||| ||| | || |||||||||||| ||||| |
seq2  GGTAGCCCTCACTTTTTCTGTAACTTTGCTTCTGTAGACCACTAGGCTGG  850

seq1  GCCTCAAACTCAGAGATCC-AAACTTGCCTCTGCTTCTGAGTGCTGGGAT  890
      ||||||||||||||||||| |||||||||||||||||||| || | ||  
seq2  GCCTCAAACTCAGAGATCCAAAACTTGCCTCTGCTTCTGAATGGTTGG--  898

seq1  TAAAGCCGTGTGGTGGCACAGGCATGCAATCCCAGAATTCCAGAGGTAAA  940
                                                        
seq2  --------------------------------------------------  898

seq1  GGCAGAGGATCATGAGTGCAAGGCCAGCCTCACCTACACAGTGAGTAGGA  990
                                                        
seq2  --------------------------------------------------  898

seq1  AGCCAGCTCATGCTGCAAGAGACCCCGTCTGAAACAGAACTACAAATGTC  1040
                                                        
seq2  --------------------------------------------------  898

seq1  ATGCTTTCTGTAAAAAATTAATAAGTATGTCTAGAAAGAACTGCAGTGAT  1090
                                                        
seq2  --------------------------------------------------  898

seq1  TACTGTTAGACTTGTCTTTTAAAAATGAAAAACTAACAGACAAACAAATA  1140
                                                        
seq2  --------------------------------------------------  898

seq1  AAATAATGGTTGG  1153
                   
seq2  -------------  898