BAC Information

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BAC

Clone NameB6Ng01-130J04
Chromosome15 (Build37)
Map Location 28,051,738 - 28,225,215
singlet/doubletdoublet
Overlap geneLOC667126, Dnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130J04.bB6Ng01-130J04.g
ACCDH931852DH931853
length1,077802
definitionDH931852|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J04, 5' end.DH931853|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,224,128 - 28,225,215)(28,051,738 - 28,052,535)
sequence
gaattctaagagttcattgttgattttttcaatgttcacgtctgaccaaa
gggtatcttgataactattcacagtctcgatgacattgttgtacaggctg
tatattttctgtagaagattcagctgcctctttatctcaagaagctgagg
atacggtgtaactggcaaaccaaaaagttcctctcctccagtgtaggtga
tgtatttacgatatatgttatcgaattgattctgatgaaaagcataagtg
aactccatcagaatgattaacacgtgggccaacacattggcaaatgagca
tgtaggtacagtagtgagtatgtttatctgaaaataattctaattgtaac
aacagttaaatttgatttttaaatgtaagtgcatcctcagccgtataata
gagtttttaccctctacatggactataaacacaggaagacagtcattgct
taagaagtttgtaggaatgaaaaggtttacctggaatataataagcctgc
cgctggcttcctggggcttcaatccacttgccatcggaccattctgatgc
agattaaatataagacagaagacaaagtgaagcatccgtacacaaatttc
atgagatcaacatactggggtatcaaaatttccacgcatgatgtatacat
gataggacattgtgtttattgatgttgtttatctttaatttccaaaagga
actctgactgtaatccacttgggaagatgtttctagactgaaaagctgag
ggcataccacagtttccagaggttaggaaatcttgcaagtttttaaccat
ttattgtttacctcctagatgacaccgacaaggaaggcttagtggccgtt
ctggggaaagcttacagttctgggttctgaagtaaagcactactgtgata
gcttgcagagtctaccactctaacagctctctgggaaatgaaacatagtc
gatgcagtccagttcaatgttcctaattatgacactcaactaagttgctc
tttgtttctgggcatgagtagggcatagcctcctggcttatgactttcag
ttgaatgtcgccactatatagattcaa
gaattcacagtcaattatgtctgctacatcatgggatgtttgtataatat
atatttttaattttatttttaaattatatgtaaataaatatatatttatt
tacatatataactatataaatacatttattttaatatataaatatatttc
actatataaatatataaaactatatattaaatagataaatatataagtaa
aatatataaataaaataataattttattattttatgctatttatattgtt
tccttttgtagaaaaataatcttgatgtaggcagaaagaatagcagtcca
agaagggtgcctttggaaaagctgtgttccacttcttttttttttttttt
ttgtttttgttttttgtttttcgagacagggtttctctgtatagccctga
ctgtcctgaaactcactctgtagaccaggctggcctcaaactcagaaatc
cacctgcctctgcctcctgagtgctgggattaaaggcatgcaccaccact
gcccggagtgttccacttcttatattaattgcttttttggctttgaatta
ctggggtcataaaaatcatgcaaaatttagaccttaagtcactgtgagga
caagcccaattaaaattcactttagaaactcttactattctttcttacat
tcaaattatgcaatacattctttaccatttttctgagacaatggctccat
tttttcctagactatttctgagatgtataaaattctccatctgggacaaa
cccagtcttactgtcttctccacatgtagaacactaagtaaattctctca
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28224128_28225215
seq2: B6Ng01-130J04.b_46_1122 (reverse)

seq1  TTGAATCTATTAGGTGGCGACATTTCAAACTGGAAAGGTCATAAAGGCAG  50
      ||||||||||   |||||||||||   |||||  || ||||| ||| |||
seq2  TTGAATCTATATAGTGGCGACATT--CAACTG--AAAGTCAT-AAGCCAG  45

seq1  GAGGCTATGCACTTAACTCATGCCCAAGGAAACAAAGAGCAACTTAGTTG  100
      |||||||||| ||  |||||||||||  ||||||||||||||||||||||
seq2  GAGGCTATGCCCT--ACTCATGCCCA--GAAACAAAGAGCAACTTAGTTG  91

seq1  AGGTGTCATAATTTAGGAACATTGAACTGGACTGCATCGACTATGTTTCA  150
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  A-GTGTCATAA-TTAGGAACATTGAACTGGACTGCATCGACTATGTTTCA  139

seq1  TTTTCCAGAGAGCTGTTAGAGTGGTAGACTCTGCAAGCTAATCACAGTAG  200
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCCCAGAGAGCTGTTAGAGTGGTAGACTCTGCAAGCT-ATCACAGTAG  188

seq1  TGCTTTACTTCAGAA-CCAGAACTGTAAGCTTTCCCCAGAACGGCCACTA  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCTTTACTTCAGAACCCAGAACTGTAAGCTTTCCCCAGAACGGCCACTA  238

seq1  AGCCTTCCTTGTCGGTGTCATCTAGGAGGTAAACAATAAATGGTTAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCTTGTCGGTGTCATCTAGGAGGTAAACAATAAATGGTTAAAAA  288

seq1  CTTGCAAGATTTCCTAACCTCTGGAAACTGTGGTATGCCCTCAGCTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAGATTTCCTAACCTCTGGAAACTGTGGTATGCCCTCAGCTTTTC  338

seq1  AGTCTAGAAACATCTTCCCAAGTGGATTACAGTCAGAGTTCCTTTTGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAACATCTTCCCAAGTGGATTACAGTCAGAGTTCCTTTTGGAA  388

seq1  ATTAAAGATAAACAACATCAATAAACACAATGTCCTATCATGTATACATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATAAACAACATCAATAAACACAATGTCCTATCATGTATACATC  438

seq1  ATGCGTGGAAATTTTGATACCCCAGTATGTTGATCTCATGAAATTTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGGAAATTTTGATACCCCAGTATGTTGATCTCATGAAATTTGTGT  488

seq1  ACGGATGCTTCACTTTGTCTTCTGTCTTATATTTAATCTGCATCAGAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATGCTTCACTTTGTCTTCTGTCTTATATTTAATCTGCATCAGAATG  538

seq1  GTCCGATGGCAAGTGGATTGAAGCCCCAGGAAGCCAGCGGCAGGCTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGATGGCAAGTGGATTGAAGCCCCAGGAAGCCAGCGGCAGGCTTATT  588

seq1  ATATTCCAGGTAAACCTTTTCATTCCTACAAACTTCTTAAGCAATGACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCAGGTAAACCTTTTCATTCCTACAAACTTCTTAAGCAATGACTG  638

seq1  TCTTCCTGTGTTTATAGTCCATGTAGAGGGTAAAAACTCTATTATACGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGTTTATAGTCCATGTAGAGGGTAAAAACTCTATTATACGGC  688

seq1  TGAGGATGCACTTACATTTAAAAATCAAATTTAACTGTTGTTACAATTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGCACTTACATTTAAAAATCAAATTTAACTGTTGTTACAATTAG  738

seq1  AATTATTTTCAGATAAACATACTCACTACTGTACCTACATGCTCATTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCAGATAAACATACTCACTACTGTACCTACATGCTCATTTGC  788

seq1  CAATGTGTTGGCCCACGTGTTAATCATTCTGATGGAGTTCACTTATGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTTGGCCCACGTGTTAATCATTCTGATGGAGTTCACTTATGCTT  838

seq1  TTCATCAGAATCAATTCGATAACATATATCGTAAATACATCACCTACACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGAATCAATTCGATAACATATATCGTAAATACATCACCTACACT  888

seq1  GGAGGAGAGGAACTTTTTGGTTTGCCAGTTACACCGTATCCTCAGCTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGGAACTTTTTGGTTTGCCAGTTACACCGTATCCTCAGCTTCT  938

seq1  TGAGATAAAGAGGCAGCTGAATCTTCTACAGAAAATATACAGCCTGTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAAGAGGCAGCTGAATCTTCTACAGAAAATATACAGCCTGTACA  988

seq1  ACAATGTCATCGAGACTGTGAATAGTTATCAAGATACCCTTTGGTCAGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCATCGAGACTGTGAATAGTTATCAAGATACCCTTTGGTCAGAC  1038

seq1  GTGAACATTGAAAAAATCAACAATGAACTCTTAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATTGAAAAAATCAACAATGAACTCTTAGAATTC  1077

seq1: chr15_28051738_28052535
seq2: B6Ng01-130J04.g_66_861

seq1  GAATTCACAGTCAATTATGTCTGCTACATCATGGGATGTTTGTATAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCAATTATGTCTGCTACATCATGGGATGTTTGTATAATAT  50

seq1  ATATTTTTAATTTTATTTTTAAATTATATGTAAATAAATATATATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAATTTTATTTTTAAATTATATGTAAATAAATATATATTTATT  100

seq1  TACATATATAACTATATAAATACATTTATTTTAATATATAAATATATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATAACTATATAAATACATTTATTTTAATATATAAATATATTTC  150

seq1  ACTATATAAATATATAAAACTATATATTAAATAGATAAATATATAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAAATATATAAAACTATATATTAAATAGATAAATATATAAGTAA  200

seq1  AATATATAAATAAAATAATAATTTTATTATTTTATGCTATTTATATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAATAAAATAATAATTTTATTATTTTATGCTATTTATATTGTT  250

seq1  TCCTTTTGTAGAAAAATAATCTTGATGTAGGCAGAAAGAATAGCAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTAGAAAAATAATCTTGATGTAGGCAGAAAGAATAGCAGTCCA  300

seq1  AGAAGGGTGCCTTTGGAAAAGCTGTGTTCCACTTCTTTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTGCCTTTGGAAAAGCTGTGTTCCACTTCTTTTTTTTTTTTTTT  350

seq1  TTGTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGA  400

seq1  CTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATC  450

seq1  CACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCATGCACCACCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCATGCACCACCACT  500

seq1  GCCCGGAGTGTTCCACTTCTTATATTAATTGCTTTTTTGGCTTTGAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGAGTGTTCCACTTCTTATATTAATTGCTTTTTTGGCTTTGAATTA  550

seq1  CTGGGGTCATAAAAATCATGCAAAATTTAGACCTTAAGTCACTGTGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCATAAAAATCATGCAAAATTTAGACCTTAAGTCACTGTGAGGA  600

seq1  CAAGCCCAATTAAAATTCACTTTAGAAACTCTTACTATTCTTTCTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAATTAAAATTCACTTTAGAAACTCTTACTATTCTTTCTTACAT  650

seq1  TCAAATTATGCAATACATTTCTTTACCATTTTTCTGAGACAATGGCTCCA  700
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAAATTATGCAATACA-TTCTTTACCATTTTTCTGAGACAATGGCTCCA  699

seq1  TTTTTTCCTAGACTATTTCTGAGATGTATAAAATTCTCCATCTGGGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTAGACTATTTCTGAGATGTATAAAATTCTCCATCTGGGACAA  749

seq1  ACCCAAGTCTTACTGTCTTCTCCACATGTAG-ACACTAAAGTAAATTCT  798
      |||| |||||||||||||||||||||||||| ||||| |||||||||||
seq2  ACCC-AGTCTTACTGTCTTCTCCACATGTAGAACACT-AAGTAAATTCT  796