BAC Information

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BAC

Clone NameB6Ng01-132A15
Chromosome15 (Build37)
Map Location 17,132,992 - 17,268,668
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132A15.bB6Ng01-132A15.g
ACCDH932948DH932949
length1,1191,165
definitionDH932948|Mus musculus domesticus DNA, BAC clone: B6Ng01-132A15, 5' end.DH932949|Mus musculus domesticus DNA, BAC clone: B6Ng01-132A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,132,992 - 17,134,121)(17,267,491 - 17,268,668)
sequence
gaattcagatataaggagattcccatcttctacagcttccaagctggaac
ttcctcagacatcagtgaagagtacagaacagcactgagatgtggcgagg
cagttgcattcttttgcttctattacactatcttcttccttcttttatcc
caaatgtaatgtgttaattcatatctagagctgtaggcaaacagtgcata
atggctaagtcagagttgtcaaaatttccatttccttaaatattatttaa
agctcgagttaatatgttaagtgtaacctggtatgaactgttctttggac
acatgtgaacagtacatgctgtttgtatcaggatatttagccgtcccatc
atctttttgttaattctggttatggccctggagagtctgtctttcattta
tttataaactagatagtagatgggacctattgtatcctcactctgctgca
taacaccaggaattgattacatttgtcttactgtgtctgtcaccagtaac
caacttcccttttactccattttcatgacttgttcttattaaacaatact
ctaaatttacatcaactttttaatttttcgcctatgaaaagtagcatatc
atatctgtaattctgtgtatgtgacatattttaaatggctttatcgagac
agggtttctctgtatagcccttgctgtcctggaactcgcctctgtagacc
aggctggcctcgaactcagaaatccacctgcctctgcctcccgagttctg
ggtgagattaaaggcctgagccactactgcccagctatccttcagtactc
tttttttttttttactgcaaaagatatatttttattcatctactgagttg
tactgaatgatatgtaaaatgtttaatgaatgcataaactttcagttgct
acccaacttgatactttgtttctgtgatgatggatagtactgaggtaatt
gcaggggttgagatatcccttggtcatactgaatttttatgaccaattat
attgtccaaagtagcaagctggagcagtgggccagtcagtgttggaagaa
attcatggtttgttccgttgttttgtttgttttggagatgagtaatccat
cttccatacattatggggt
gaattcttcctttctcatcttccttcattctaaggaatcctctgtgagat
atcatggaaattcctatcactcaaattctcataccagaaaatgaatgtgt
cagtttggaagaaactgctatgtggataaatattgggtagaaaaaaggaa
aagagaaggttaatattgctcttcatacttcatatatatctatatatctc
tgtatatttatatagatatgtatatatgtttgagtgtgtatacatattct
tagatataatatctctgtgttatatatttttgtatatgtaaatatattat
atattttatattttatatcatatatttatatattcttatttaacaacaga
aaatatacttctagcctcttagctcattagtttgggtgagtggtcatcac
agattatgttcctcagattctatagaaaattgtggctgtggtgaaagttt
tcaagtatttctgtaccaatttgtcttgtttacactctctgaggcagttt
ctgcaacttctaaaaatattctgtggcttctgaaaaaagaaccctgactc
caaaaggaaagaggaaattactagcttgttgaaaagaacaacagagagat
gaattaaattgcttttccaggaacagcacaatataattacatactaaagg
gttaaggtgaacaacacatttagtaggcagagtacttcaatgctgcccaa
caaaacctacaatattggtggattaagataaaagtaaactaatcattatc
tataattggtcactttatagaaaataaacgaatatattctaagccattat
ttgagtagcactgttaaattttattttactcttaaaaaaaaactcactgc
tagagattttattcaggcaagcacttctctttaaaagtgttcagataaat
ccttgaacgaagttctaatctatttttatatatttcacagtgtactgtga
cattgctgtttttctagattgtttgttttatgtatgtaaataactgctcc
tatcttcagtccccaccagaaaagagcatcagttcacatttacaaatgtt
tgggctaccggggtggtgcctgggaaatgagatgaagagtctgcaagaaa
cttatgctcttactgcgtgaccatctcttcagcccctccttttaaagttc
acccaggagtggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17132992_17134121
seq2: B6Ng01-132A15.b_51_1169

seq1  GAATTCAGATATAAGGAGATTCCCATCTTCTACAGCTTCCAAGCTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATAAGGAGATTCCCATCTTCTACAGCTTCCAAGCTGGAAC  50

seq1  TTCCTCAGACATCAGTGAAGAGTACAGAACAGCACTGAGATGTGGCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGACATCAGTGAAGAGTACAGAACAGCACTGAGATGTGGCGAGG  100

seq1  CAGTTGCATTCTTTTGCTTCTATTACACTATCTTCTTCCTTCTTTTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCATTCTTTTGCTTCTATTACACTATCTTCTTCCTTCTTTTATCC  150

seq1  CAAATGTAATGTGTTAATTCATATCTAGAGCTGTAGGCAAACAGTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAATGTGTTAATTCATATCTAGAGCTGTAGGCAAACAGTGCATA  200

seq1  ATGGCTAAGTCAGAGTTGTCAAAATTTCCATTTCCTTAAATATTATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGTCAGAGTTGTCAAAATTTCCATTTCCTTAAATATTATTTAA  250

seq1  AGCTCGAGTTAATATGTTAAGTGTAACCTGGTATGAACTGTTCTTTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGAGTTAATATGTTAAGTGTAACCTGGTATGAACTGTTCTTTGGAC  300

seq1  ACATGTGAACAGTACATGCTGTTTGTATCAGGATATTTAGCCGTCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAACAGTACATGCTGTTTGTATCAGGATATTTAGCCGTCCCATC  350

seq1  ATCTTTTTGTTAATTCTGGTTATGGCCCTGGAGAGTCTGTCTTTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTTAATTCTGGTTATGGCCCTGGAGAGTCTGTCTTTCATTTA  400

seq1  TTTATAAACTAGATAGTAGATGGGACCTATTGTATCCTCACTCTGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTAGATAGTAGATGGGACCTATTGTATCCTCACTCTGCTGCA  450

seq1  TAACACCAGGAATTGATTACATTTGTCTTACTGTGTCTGTCACCAGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCAGGAATTGATTACATTTGTCTTACTGTGTCTGTCACCAGTAAC  500

seq1  CAACTTCCCTTTTACTCCATTTTCATGACTTGTTCTTATTAAACAATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCCTTTTACTCCATTTTCATGACTTGTTCTTATTAAACAATACT  550

seq1  CTAAATTTACATCAACTTTTTAATTTTTCGCCTATGAAAAGTAGCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTACATCAACTTTTTAATTTTTCGCCTATGAAAAGTAGCATATC  600

seq1  ATATCTGTAATTCTGTGTATGTGACATATTTTAAATGGCTTTATCGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTAATTCTGTGTATGTGACATATTTTAAATGGCTTTATCGAGAC  650

seq1  AGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCGCCTCTGTAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCGCCTCTGTAGACC  700

seq1  AGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTG  750

seq1  GGTGAGATTAAAGGCCTGAGCCACTACTGCCCAGCTATCCTTCAGTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATTAAAGGCCTGAGCCACTACTGCCCAGCTATCCTTCAGTACTC  800

seq1  TTTTTTTTTTTTTACTGCAAAAGATATATTTTTATTCATCTACTGAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTACTGCAAAAGATATATTTTTATTCATCTACTGAGTTG  850

seq1  TACTGAATGATATGTAAAATGTTTAATGAATGCATAAACTTTCAGTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATGATATGTAAAATGTTTAATGAATGCATAAACTTTCAGTTGCT  900

seq1  ACCCAACTTGATACTTTGTTTCTGTGATGATGGATAGTACTGAGGTAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTTGATACTTTGTTTCTGTGATGATGGATAGTACTGAGGTAATT  950

seq1  GCAGGGGTTGAGATATCCCTTGGTCATACTGAATTTTTATGACCAATTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTTGAGATATCCCTTGGTCATACTGAATTTTTATGACCAATTAT  1000

seq1  ATTGTCCAAAGTAGGCAAGCTGGAGCAGTGGG-CAGTCAGGTGTTGGAAG  1049
      ||||||||||||| |||||||||||||||||| |||||| ||||||||||
seq2  ATTGTCCAAAGTA-GCAAGCTGGAGCAGTGGGCCAGTCA-GTGTTGGAAG  1048

seq1  AAATTTCATGGTTTTGTTTCGTTTTGTTTTGTTTTGTTTTGTGAGATGTA  1099
      ||| ||||||| |||||| ||  |||||||| ||||||||| |||||| |
seq2  AAA-TTCATGG-TTTGTTCCG--TTGTTTTG-TTTGTTTTG-GAGATG-A  1091

seq1  GTAATTCATCTTTCCATTACATTATTGGGGT  1130
      ||||| |||| ||||| ||||||| ||||||
seq2  GTAATCCATC-TTCCA-TACATTA-TGGGGT  1119

seq1: chr15_17267491_17268668
seq2: B6Ng01-132A15.g_66_1230 (reverse)

seq1  GTTCAACTCCTGGTTGAAAACTTAAAAATGTAGGGGCTGTAGAGATGGCT  50
      |||| |||||||| ||  ||||| |||| | |||||||| |||||||| |
seq2  GTTCCACTCCTGGGTG--AACTTTAAAA-GGAGGGGCTGAAGAGATGG-T  46

seq1  CA-GCAGTAAAGAGCACTAAGTATTCTTGCAGACATCCTTCA-CTCAATT  98
      || ||||| ||||||| ||||| |||||||||||   ||||| |||| ||
seq2  CACGCAGT-AAGAGCA-TAAGT-TTCTTGCAGAC--TCTTCATCTCATTT  91

seq1  CCCAGCAACCA-CACGGTAGCCCACAACCATTTGT-AATGTGATCTGATG  146
      |||||  |||| | ||||||||  ||| ||||||| ||||||| ||||||
seq2  CCCAGGCACCACCCCGGTAGCC--CAAACATTTGTAAATGTGAACTGATG  139

seq1  CTCTTTTCTGGT-GTGACTGAAGATAGGAGCAGTGTATTTACATACATAA  195
      |||||||||||| | ||||||||||||||||||| |||||||||||||||
seq2  CTCTTTTCTGGTGGGGACTGAAGATAGGAGCAGT-TATTTACATACATAA  188

seq1  AACAAACAATTCTTAGAAAAACAGCAATGTCACAGTACACTGTGAAATAT  245
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAT--CTAGAAAAACAGCAATGTCACAGTACACTGTGAAATAT  236

seq1  ATAAAAAATAGATTAGAACTTCGTTCAAGGATTTATCCTGAACACTTTTT  295
      || ||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AT-AAAAATAGATTAGAACTTCGTTCAAGGATTTAT-CTGAACAC-TTTT  283

seq1  AAAGAGAAGTGCTTGCCTGAATAAAATCTCTAGCAGTGAGTTTTTTTTTT  345
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGAGAAGTGCTTGCCTGAATAAAATCTCTAGCAGTGAG-TTTTTTTTT  332

seq1  AAGAGTAAAATAAAATTTAACAGTGCTACTCAAATAATGGCTTAGAATAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAAATAAAATTTAACAGTGCTACTCAAATAATGGCTTAGAATAT  382

seq1  ATTCGTTTATTTTCTATAAAGTGACCAATTATAGATAATGATTAGTTTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTTATTTTCTATAAAGTGACCAATTATAGATAATGATTAGTTTAC  432

seq1  TTTTATCTTAATCCACCAATATTGTAGGTTTTGTTGGGCAGCATTGAAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTAATCCACCAATATTGTAGGTTTTGTTGGGCAGCATTGAAGT  482

seq1  ACTCTGCCTACTAAATGTGTTGTTCACCTTAACCCTTTAGTATGTAATTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTACTAAATGTGTTGTTCACCTTAACCCTTTAGTATGTAATTA  532

seq1  TATTGTGCTGTTCCTGGAAAAGCAATTTAATTCATCTCTCTGTTGTTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCTGTTCCTGGAAAAGCAATTTAATTCATCTCTCTGTTGTTCTT  582

seq1  TTCAACAAGCTAGTAATTTCCTCTTTCCTTTTGGAGTCAGGGTTCTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAGCTAGTAATTTCCTCTTTCCTTTTGGAGTCAGGGTTCTTTTT  632

seq1  TCAGAAGCCACAGAATATTTTTAGAAGTTGCAGAAACTGCCTCAGAGAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCCACAGAATATTTTTAGAAGTTGCAGAAACTGCCTCAGAGAGT  682

seq1  GTAAACAAGACAAATTGGTACAGAAATACTTGAAAACTTTCACCACAGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGACAAATTGGTACAGAAATACTTGAAAACTTTCACCACAGCC  732

seq1  ACAATTTTCTATAGAATCTGAGGAACATAATCTGTGATGACCACTCACCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTCTATAGAATCTGAGGAACATAATCTGTGATGACCACTCACCC  782

seq1  AAACTAATGAGCTAAGAGGCTAGAAGTATATTTTCTGTTGTTAAATAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGAGCTAAGAGGCTAGAAGTATATTTTCTGTTGTTAAATAAGA  832

seq1  ATATATAAATATATGATATAAAATATAAAATATATAATATATTTACATAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATATATGATATAAAATATAAAATATATAATATATTTACATAT  882

seq1  ACAAAAATATATAACACAGAGATATTATATCTAAGAATATGTATACACAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATATAACACAGAGATATTATATCTAAGAATATGTATACACAC  932

seq1  TCAAACATATATACATATCTATATAAATATACAGAGATATATAGATATAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATATATACATATCTATATAAATATACAGAGATATATAGATATAT  982

seq1  ATGAAGTATGAAGAGCAATATTAACCTTCTCTTTTCCTTTTTTCTACCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTATGAAGAGCAATATTAACCTTCTCTTTTCCTTTTTTCTACCCA  1032

seq1  ATATTTATCCACATAGCAGTTTCTTCCAAACTGACACATTCATTTTCTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCCACATAGCAGTTTCTTCCAAACTGACACATTCATTTTCTGG  1082

seq1  TATGAGAATTTGAGTGATAGGAATTTCCATGATATCTCACAGAGGATTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAATTTGAGTGATAGGAATTTCCATGATATCTCACAGAGGATTCC  1132

seq1  TTAGAATGAAGGAAGATGAGAAAGGAAGAATTC  1178
      |||||||||||||||||||||||||||||||||
seq2  TTAGAATGAAGGAAGATGAGAAAGGAAGAATTC  1165