BAC Information

Click to search

BAC

Clone NameB6Ng01-134E23
Chromosome15 (Build37)
Map Location 79,409,671 - 79,556,257
singlet/doubletdoublet
Overlap geneDmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b
Upstream genePscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17
Downstream geneDnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134E23.bB6Ng01-134E23.g
ACCDH934639DH934640
length1,088246
definitionDH934639|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E23, 5' end.DH934640|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,555,164 - 79,556,257)(79,409,671 - 79,409,916)
sequence
gaattcttagatgaactacaattcacatatggcccaagggctgcctcact
gagggtggtgacccttaggaaccccaaagtccccaagggcctttggcctg
gaaactctgttccaggaaacagaaactttagaaattcagctttttgtttt
tgtcatgagctccggggcaggagacctctggctgctggactggttccctg
ccccaccccttctgttgctgaggtgttaaagcactctgtgactctgaacc
ccctctcttctccctaggcctctaagatggccacataccaagttgtggag
cttcggatcctgaccaactggggccaccctgagtacacgtgtatctaccg
cttccgggtgcacggagagcctgcccactagtcttctgagatcttgggcc
tgttgctagccacgtgggaagctcatctttcccagcatctaccctgctct
gaaaataggtgcccagcaccccaccgctgcctgcacatgcttcttagcgc
tgacttccaggagcaagagtgaagaggcagcacgtagaactccctgcata
agccaagccaccaggctcctatgcctctcttagtcttccccctagagcta
ggcgcctaccaggtgtatatatgtagcatactttgggggactgcgatcag
aagtgaggtggagggactggcaccggttaactcctggtaggtgccaaagc
catgggcataccaagccagagccccagggataagctggggggtcttgtgg
cctttaggacagtgcttagcactgtgcagctgggactgtccctggcaagt
gcctggtaaaggacaccgaggctgctgagctcttccagcatggagggtac
catggcccgtaggagcctggggttcctagcaaacgggaggaaaccagctc
ctgtgtgcctctgacgactgttgtctgtgccacctaagagattcccagtg
ctgggaccactgctttttttcctgatgtggggtgaggtctattctgtttc
caattctgctgcatcctgctgttcccacagcagcttttcacccctcaagg
aagacccagccctggctttggctatattctgcagggtt
tgtatgtgtgcgggtgactctcacaggctcttttttctttttaaagaatt
attttaccccataggtggaacaacaatatgaactaaccagtaccccggag
ctcttgtctctagctgcatatgtatcaaaagatggcctagtcggccatca
ctggaaagagaggcccattggacttgcaaactttatatgccccagtacag
gggaacgccagggccaaaaagggggagtgggtgtgtaggggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79555164_79556257
seq2: B6Ng01-134E23.b_44_1131 (reverse)

seq1  AACCCTGCAGAATAGCCCCAAAGCCAGGGCTGGGTCCTCCCTGGGGGGTG  50
      ||||||||||||||   ||||||||||||||||||| ||| || ||||||
seq2  AACCCTGCAGAATATAGCCAAAGCCAGGGCTGGGTCTTCCTTGAGGGGTG  50

seq1  GAAAGCTTGCTGTGGGGCACAGGCAGGATGCAGCAGGAATGGGAAACAGA  100
       ||||| |||||| ||| ||| ||||||||||||| |||| |||||||||
seq2  AAAAGC-TGCTGT-GGGAACA-GCAGGATGCAGCA-GAATTGGAAACAGA  96

seq1  ATAGACCCTCACCCCACATCAGGAAAAAAAGCAGTGGTCCCAGCACTGGG  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGA-CCTCACCCCACATCAGGAAAAAAAGCAGTGGTCCCAGCACTGGG  145

seq1  AATCTCTTAGGTTGGCACAGACAACAGTCGTCAGAGGCACACAGGAGCTG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTAGG-TGGCACAGACAACAGTCGTCAGAGGCACACAGGAGCTG  194

seq1  GTTTCCTCCCGTTTGCTAGGAACCCCAGGCTCCTACGGGCCATGGTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCCGTTTGCTAGGAACCCCAGGCTCCTACGGGCCATGGTACCC  244

seq1  TCCATGCTGGAAGAGCTCAGCAGCCTCGGTGTCCTTTACCAGGCACTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTGGAAGAGCTCAGCAGCCTCGGTGTCCTTTACCAGGCACTTGC  294

seq1  CAGGGACAGTCCCAGCTGCACAGTGCTAAGCACTGTCCTAAAGGCCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGTCCCAGCTGCACAGTGCTAAGCACTGTCCTAAAGGCCACAA  344

seq1  GACCCCCCAGCTTATCCCTGGGGCTCTGGCTTGGTATGCCCATGGCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCCAGCTTATCCCTGGGGCTCTGGCTTGGTATGCCCATGGCTTTG  394

seq1  GCACCTACCAGGAGTTAACCGGTGCCAGTCCCTCCACCTCACTTCTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTACCAGGAGTTAACCGGTGCCAGTCCCTCCACCTCACTTCTGATC  444

seq1  GCAGTCCCCCAAAGTATGCTACATATATACACCTGGTAGGCGCCTAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCCCCAAAGTATGCTACATATATACACCTGGTAGGCGCCTAGCTC  494

seq1  TAGGGGGAAGACTAAGAGAGGCATAGGAGCCTGGTGGCTTGGCTTATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGAAGACTAAGAGAGGCATAGGAGCCTGGTGGCTTGGCTTATGCA  544

seq1  GGGAGTTCTACGTGCTGCCTCTTCACTCTTGCTCCTGGAAGTCAGCGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCTACGTGCTGCCTCTTCACTCTTGCTCCTGGAAGTCAGCGCTA  594

seq1  AGAAGCATGTGCAGGCAGCGGTGGGGTGCTGGGCACCTATTTTCAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATGTGCAGGCAGCGGTGGGGTGCTGGGCACCTATTTTCAGAGCA  644

seq1  GGGTAGATGCTGGGAAAGATGAGCTTCCCACGTGGCTAGCAACAGGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGATGCTGGGAAAGATGAGCTTCCCACGTGGCTAGCAACAGGCCCA  694

seq1  AGATCTCAGAAGACTAGTGGGCAGGCTCTCCGTGCACCCGGAAGCGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAGAAGACTAGTGGGCAGGCTCTCCGTGCACCCGGAAGCGGTAG  744

seq1  ATACACGTGTACTCAGGGTGGCCCCAGTTGGTCAGGATCCGAAGCTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGTGTACTCAGGGTGGCCCCAGTTGGTCAGGATCCGAAGCTCCAC  794

seq1  AACTTGGTATGTGGCCATCTTAGAGGCCTAGGGAGAAGAGAGGGGGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTATGTGGCCATCTTAGAGGCCTAGGGAGAAGAGAGGGGGTTCA  844

seq1  GAGTCACAGAGTGCTTTAACACCTCAGCAACAGAAGGGGTGGGGCAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAGAGTGCTTTAACACCTCAGCAACAGAAGGGGTGGGGCAGGGA  894

seq1  ACCAGTCCAGCAGCCAGAGGTCTCCTGCCCCGGAGCTCATGACAAAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCAGCAGCCAGAGGTCTCCTGCCCCGGAGCTCATGACAAAAACA  944

seq1  AAAAGCTGAATTTCTAAAGTTTCTGTTTCCTGGAACAGAGTTTCCAGGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGAATTTCTAAAGTTTCTGTTTCCTGGAACAGAGTTTCCAGGCC  994

seq1  AAAGGCCCTTGGGGACTTTGGGGTTCCTAAGGGTCACCACCCTCAGTGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCTTGGGGACTTTGGGGTTCCTAAGGGTCACCACCCTCAGTGAG  1044

seq1  GCAGCCCTTGGGCCATATGTGAATTGTAGTTCATCTAAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTTGGGCCATATGTGAATTGTAGTTCATCTAAGAATTC  1088

seq1: chr15_79409671_79409916
seq2: B6Ng01-134E23.g_77_322

seq1  TGTATGTGTGCGGGTGACTCTCACAGGCTCTTTTTTCTTTTTAAAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGCGGGTGACTCTCACAGGCTCTTTTTTCTTTTTAAAGAATT  50

seq1  ATTTTACCCCATAGGTGGAACAACAATATGAACTAACCAGTACCCCGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCCCATAGGTGGAACAACAATATGAACTAACCAGTACCCCGGAG  100

seq1  CTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCA  150

seq1  CTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAG  200

seq1  GGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGTGTAGGGGAGTGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGTGTAGGGGAGTGG  246