BAC Information

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BAC

Clone NameB6Ng01-135C01
Chromosome15 (Build37)
Map Location 16,754,938 - 16,755,968
singlet/doubletsinglet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C01.bB6Ng01-135C01.g
ACCDH935246DH935247
length1,2111,042
definitionDH935246|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C01, 5' end.DH935247|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatacattttcttgcatctgttgagacttgctttgtgtctgagc
atatggccaattttggagaatgttctatgaggtgctcagaagaatatgta
ttcttttgtgttttggtgaaatgttttgtagctatctgttaggtccattt
gagtcataatggctgtcagtttcataatttctgtttagtttttgcctgga
ggacttgcctattgatgagagtggggtattgaaatctctcaccttttttc
tgttttattttaatagaaatttactttatttaatatttaaaatattgtgc
cctttcctggctaccactccgaaaaacccttatacactcccccctcaccc
tgctcaccaacctacccacacccacttcttggccctggtcttcccctaca
cgggggcatagagccttcacagtaccaagagcctctcctcgtattgatag
ctgactaggccatcctctaccacatatgcagttggagccatgagtcccat
catgtatactctttgattgatgatttactccctgggagctctgggagtaa
tggttagttcgtatttttttcctcctatggggcttgtaaccccttcagct
ccttgggtactttctctagctccttcattggggaccctgcactcagccca
atggtagttttcgagaatccacctctgtatttgtcaggcactgctggagc
ctctcaggagatagctatgacaatcagtaagcacttgttggcttccacaa
aagtgtctgcatttggtgattgcatatggaatggatctccaggtggggca
gtctctggatggtcattccttcagtctctgttccacactttgtctctgta
actccttccatgggtattttgttcccctttctaagaagaatctaagtatt
catactttgatcttccttcttttttgagtttcatgtggtttgtgactgta
tctttggtatttccagcttctgggctaatatctactatcagtgagtacat
atcatgtgtgttctttttgtgatgggtacctccctcaggatgatttctcc
tagatccatccattttcgagaatttcattattctcttgtacgagctcagt
tccatggatcagcccaccacacaaacccaatatacctgacctagtgtaag
tactggaaagcttgaccattggccaggagttcggaccagaccccaatgcc
ttgttctctga
gaattcatttgtattaaaacttaatcctcacggcccatgcaggacatatg
cctttaggccacatatcggagatccagtaagtgacaagacgaaaattaga
actagctagtctgactaaaggtcaacagttctctgtgattttcccaacag
actgcttagttaggtttgtcttcttgattccatggacagtgagccttttt
caaagagtctcaattggcacaggaaagaattagaatgctagcttgcaatt
ttatgctgtgtgtaggaactgataagttctttctgaatacaggtcagatc
atatttatgaattgcaaaagacatgtttatcaaccccaaatataacaaaa
tagcaagtagcctgaaggagaattaatacaaatatagaaacttaatattt
gacaaatattaagaattgaatcattgaaggtttttaaaataacatttaaa
ggtatttatttgcctttaaattgttttatattaaataaataatgataaaa
taaatgcttatatttaatatgagaaagaaggcacctgcattgagcggata
tgtgataagaatgtaatggaatgatgggatagtagtacattaactattaa
agaatatttatcagaaagagtagagagagcagtatactgtaagatatatc
agcatatattgtatgggaaaatctcttttcaataaaatcaaaaagggcaa
atgatttgtcataaagatcaatatacttgatacagaaaaatcctcatttt
tcttaatttttattttttattcatatgggtgctttgcctgaatgtttgtc
tgtgaccacatgtgcccttgcctggtttctctggagagcagaggaggcca
tgaaatggcctggactggagttatagacagtgacaagccaccatgtgcat
tttgggaatcaaatacagaccagatagttctgtatatctgagccatcttc
ccacctccattctgtgtaagaaaagtagactgaacaattggtactaaagc
attcagttcagtgtgtggtgttgtggatgtggggtgtgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16754938_16755968
seq2: B6Ng01-135C01.g_68_1109 (reverse)

seq1  CATACACAC------------ACA-CACACACTGAACTGAATGCTTTAGT  37
      |||||||||            ||| |||||||||||||||||||||||||
seq2  CATACACACCCCACATCCACAACACCACACACTGAACTGAATGCTTTAGT  50

seq1  ACCAATTGTTCAGTCTACTTTTCTTACAACAGAATGGAGGTTGGGAAGAT  87
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  ACCAATTGTTCAGTCTACTTTTCTTAC-ACAGAATGGAGG-TGGGAAGAT  98

seq1  GGCTCAGATATACAG-ACTATCTGGTCTGTATTTGATTCCCAAAATGCAC  136
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCTCAGATATACAGAACTATCTGGTCTGTATTTGATTCCCAAAATGCAC  148

seq1  ATGGTGGCTTGTCACTGTCTATAACTCCAGTCCCAGGCCATTTCATGGCC  186
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGTGGCTTGTCACTGTCTATAACTCCAGT-CCAGGCCATTTCATGGCC  197

seq1  TCCTCTGCTCTCCAGAGAAACCAGGCAAGGGCACATGTGGTCACAGACAA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTCTCCAGAGAAACCAGGCAAGGGCACATGTGGTCACAGACAA  247

seq1  ACATTCAGGCAAAGCACCCATATGAATAAAAAATAAAAATTAAGAAAAAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGGCAAAGCACCCATATGAATAAAAAATAAAAATTAAGAAAAAT  297

seq1  GAGGATTTTTCTGTATCAAGTATATTGATCTTTATGACAAATCATTTGCC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTTTCTGTATCAAGTATATTGATCTTTATGACAAATCATTTGCC  347

seq1  CTTTTTGATTTTATTGAAAAGAGATTTTCCCATACAATATATGCTGATAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGATTTTATTGAAAAGAGATTTTCCCATACAATATATGCTGATAT  397

seq1  ATCTTACAGTATACTGCTCTCTCTACTCTTTCTGATAAATATTCTTTAAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAGTATACTGCTCTCTCTACTCTTTCTGATAAATATTCTTTAAT  447

seq1  AGTTAATGTACTACTATCCCATCATTCCATTACATTCTTATCACATATCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGTACTACTATCCCATCATTCCATTACATTCTTATCACATATCC  497

seq1  GCTCAATGCAGGTGCCTTCTTTCTCATATTAAATATAAGCATTTATTTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATGCAGGTGCCTTCTTTCTCATATTAAATATAAGCATTTATTTTA  547

seq1  TCATTATTTATTTAATATAAAACAATTTAAAGGCAAATAAATACCTTTAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTATTTAATATAAAACAATTTAAAGGCAAATAAATACCTTTAA  597

seq1  ATGTTATTTTAAAAACCTTCAATGATTCAATTCTTAATATTTGTCAAATA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTTTAAAAACCTTCAATGATTCAATTCTTAATATTTGTCAAATA  647

seq1  TTAAGTTTCTATATTTGTATTAATTCTCCTTCAGGCTACTTGCTATTTTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCTATATTTGTATTAATTCTCCTTCAGGCTACTTGCTATTTTG  697

seq1  TTATATTTGGGGTTGATAAACATGTCTTTTGCAATTCATAAATATGATCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGGGGTTGATAAACATGTCTTTTGCAATTCATAAATATGATCT  747

seq1  GACCTGTATTCAGAAAGAACTTATCAGTTCCTACACACAGCATAAAATTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTATTCAGAAAGAACTTATCAGTTCCTACACACAGCATAAAATTG  797

seq1  CAAGCTAGCATTCTAATTCTTTCCTGTGCCAATTGAGACTCTTTGAAAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAGCATTCTAATTCTTTCCTGTGCCAATTGAGACTCTTTGAAAAA  847

seq1  GGCTCACTGTCCATGGAATCAAGAAGACAAACCTAACTAAGCAGTCTGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTGTCCATGGAATCAAGAAGACAAACCTAACTAAGCAGTCTGTT  897

seq1  GGGAAAATCACAGAGAACTGTTGACCTTTAGTCAGACTAGCTAGTTCTAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATCACAGAGAACTGTTGACCTTTAGTCAGACTAGCTAGTTCTAA  947

seq1  TTTTCGTCTTGTCACTTACTGGATCTCCGATATGTGGCCTAAAGGCATAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTCTTGTCACTTACTGGATCTCCGATATGTGGCCTAAAGGCATAT  997

seq1  GTCCTGCATGGGCCGTGAGGATTAAGTTTTAATACAAATGAATTC  1031
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCATGGGCCGTGAGGATTAAGTTTTAATACAAATGAATTC  1042