BAC Information

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BAC

Clone NameB6Ng01-136A08
Chromosome15 (Build37)
Map Location 8,490,848 - 8,635,264
singlet/doubletdoublet
Overlap geneSlc1a3
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633
Downstream geneEG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A08.bB6Ng01-136A08.g
ACCDH935912DH935913
length1,126165
definitionDH935912|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A08, 5' end.DH935913|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,634,125 - 8,635,264)(8,490,848 - 8,491,012)
sequence
gaattcactaccagacgccatgtccatgactgttaaacaaacagtgattg
ggaaggcttttccctcgtcttctgagtgtgatcctaattgttctgttttg
tatcagacaagagcatcatagtaagaaatcaaaaggtcaccgggcagtgg
tggcacacgcctttaatcccagcacttgggaggcagaggcaggtggattt
ctgagttcgaggccagcctggtctacagagtgagttccaggacagccagg
gctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaa
aaaaagggaaaatgctttatactttaattctctcaagttcaaaagctttg
tggcaggggcgggggagggggtggtctgtgaagatggaaactaagttgaa
taaaataattattgcatttagttttcaaagattctagagaatataccaaa
acacatagagacaccaaaattatgctttatttcttaatatttgtttcttt
gttgtggttctagtcatcaagtcagtaccttgtacatgccgggcaaacac
tctcccattcttccgattaactatgtgcccagaccaacttaccacacagc
tcagcgacagatttttgtacttgaaacactcatgtttgtgagctgaggca
ttaaagctccatgaggcacattcttgtcctgagttgaaatcctgtcttcc
caaacatccctggtgtatattagcattccagaagctgcagtgggaatctg
ggaggaagcccaatggctacatttgtactcaagtaccttacccccccctt
cttttcttgaacaagaagaataggtctatgccaacacccccacacaataa
aacaagactttggcaccattttctattggtttggtcaggaaagcagccaa
actagctatttcatgccagaaatatgagttggtttggccggcttagcctg
atttaacgcacaggataataataaatgccattcttggttatatgagtgaa
tatagctaggcctacctcctgaacttccttgttcaaaaattgtctcctgt
ggttttattctaagtgtcacttcctagagacagtcagcacaggaagctta
tgtcagtcctggtttctgtgagggaa
tttttgttcttactttttgggagagtggggaggaaaggaaagagagtcat
aacattgggtgggtagggaggttgggagagtattgagggagtggaatcca
tgatcaatatatattgtatgaggcaaatagagcagggtgcccggactgat
tttgtttgtgaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8634125_8635264
seq2: B6Ng01-136A08.b_48_1173 (reverse)

seq1  TTCCCTTACAGAAAACCAGGACTGACAGTAAAGCTTTCCTGTGCTGACTG  50
      |||||| |||| |||||||||||||||   |||| |||||||||||||||
seq2  TTCCCTCACAG-AAACCAGGACTGACA--TAAGC-TTCCTGTGCTGACTG  46

seq1  TCTC-AGGAAGATGAACACTTAGAATAAAAACACAAGGAAGCACCAATTT  99
      |||| |||||| || ||||||||||||||| |||| |  |    ||||||
seq2  TCTCTAGGAAG-TG-ACACTTAGAATAAAACCACAGGAGA----CAATTT  90

seq1  TTGAACAAAAGAAAGGTTCAGGA-GTAGGGCTAGCTATATTCACTCAATA  148
      ||||||  ||| || |||||||| ||||| |||||||||||||||| |||
seq2  TTGAAC--AAGGAA-GTTCAGGAGGTAGGCCTAGCTATATTCACTC-ATA  136

seq1  TAACCAGACATGGCATTTAATTATTATCCTGTGCGTTAAATCAGGCTAAG  198
      ||||||   ||||||||| |||||||||||||||||||||||||||||||
seq2  TAACCAAGAATGGCATTT-ATTATTATCCTGTGCGTTAAATCAGGCTAAG  185

seq1  CCGGCCAAACCAACTCATATTTCTGGCATGAAATAGCTAGTTTGGCTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCAAACCAACTCATATTTCTGGCATGAAATAGCTAGTTTGGCTGCT  235

seq1  TATCCTGACCAAACCAATAGAAAATGGTGCCAAAGTCTTGTTTTATTGTG  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-TCCTGACCAAACCAATAGAAAATGGTGCCAAAGTCTTGTTTTATTGTG  284

seq1  TGGGGGTGTTGGCATAGACCTATTCTTCTTGTTCAAGAAAAGAAGGGGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGTTGGCATAGACCTATTCTTCTTGTTCAAGAAAAGAAGGGGGG  334

seq1  GGTAAGGTACTTGAGTACAAATGTAGCCATTGGGCTTCCTCCCAGATTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTACTTGAGTACAAATGTAGCCATTGGGCTTCCTCCCAGATTCC  384

seq1  CACTGCAGCTTCTGGAATGCTAATATACACCAGGGATGTTTGGGAAGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCTTCTGGAATGCTAATATACACCAGGGATGTTTGGGAAGACA  434

seq1  GGATTTCAACTCAGGACAAGAATGTGCCTCATGGAGCTTTAATGCCTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAACTCAGGACAAGAATGTGCCTCATGGAGCTTTAATGCCTCAG  484

seq1  CTCACAAACATGAGTGTTTCAAGTACAAAAATCTGTCGCTGAGCTGTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAACATGAGTGTTTCAAGTACAAAAATCTGTCGCTGAGCTGTGTG  534

seq1  GTAAGTTGGTCTGGGCACATAGTTAATCGGAAGAATGGGAGAGTGTTTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGGTCTGGGCACATAGTTAATCGGAAGAATGGGAGAGTGTTTGC  584

seq1  CCGGCATGTACAAGGTACTGACTTGATGACTAGAACCACAACAAAGAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCATGTACAAGGTACTGACTTGATGACTAGAACCACAACAAAGAAAC  634

seq1  AAATATTAAGAAATAAAGCATAATTTTGGTGTCTCTATGTGTTTTGGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAGAAATAAAGCATAATTTTGGTGTCTCTATGTGTTTTGGTAT  684

seq1  ATTCTCTAGAATCTTTGAAAACTAAATGCAATAATTATTTTATTCAACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAGAATCTTTGAAAACTAAATGCAATAATTATTTTATTCAACTT  734

seq1  AGTTTCCATCTTCACAGACCACCCCCTCCCCCGCCCCTGCCACAAAGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATCTTCACAGACCACCCCCTCCCCCGCCCCTGCCACAAAGCTT  784

seq1  TTGAACTTGAGAGAATTAAAGTATAAAGCATTTTCCCTTTTTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGAGAGAATTAAAGTATAAAGCATTTTCCCTTTTTTTTTTTTT  834

seq1  TTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  884

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCAC  934

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCC  984

seq1  CGGTGACCTTTTGATTTCTTACTATGATGCTCTTGTCTGATACAAAACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACCTTTTGATTTCTTACTATGATGCTCTTGTCTGATACAAAACAG  1034

seq1  AACAATTAGGATCACACTCAGAAGACGAGGGAAAAGCCTTCCCAATCACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAGGATCACACTCAGAAGACGAGGGAAAAGCCTTCCCAATCACT  1084

seq1  GTTTGTTTAACAGTCATGGACATGGCGTCTGGTAGTGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTAACAGTCATGGACATGGCGTCTGGTAGTGAATTC  1126

seq1: chr15_8490848_8491012
seq2: B6Ng01-136A08.g_73_237

seq1  TTTTTGTTCTTACTTTTTGGGAGAGTGGGGAGGAAAGGAAAGAGAGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTCTTACTTTTTGGGAGAGTGGGGAGGAAAGGAAAGAGAGTCAT  50

seq1  AACATTGGGTGGGTAGGGAGGTTGGGAGAGTATTGAGGGAGTGGAAACCA  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACATTGGGTGGGTAGGGAGGTTGGGAGAGTATTGAGGGAGTGGAATCCA  100

seq1  TGATCAAAATATATTGTATGAGGCAAATAGAGCAGTGTGCAGGTACTGAT  150
      ||||||| ||||||||||||||||||||||||||| ||||  | ||||||
seq2  TGATCAATATATATTGTATGAGGCAAATAGAGCAGGGTGCCCGGACTGAT  150

seq1  TTTGTTTGAGACCCT  165
      |||||||| ||||||
seq2  TTTGTTTGTGACCCT  165