BAC Information

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BAC

Clone NameB6Ng01-136H05
Chromosome15 (Build37)
Map Location 53,939,964 - 54,122,232
singlet/doubletdoublet
Overlap geneTnfrsf11b
Upstream geneExt1, Samd12, EG665097, EG621631
Downstream geneLOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H05.bB6Ng01-136H05.g
ACCDH936220DH936221
length1,100855
definitionDH936220|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H05, 5' end.DH936221|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,939,964 - 53,941,075)(54,121,375 - 54,122,232)
sequence
gaattctctgtttagatctataacccatttttaattgaattatttaggat
gtttcaatgtctagtttcttgagttctttttatattttggatattagtcc
tttatcagctacagagttggcaaaaatcttttcctgttccataggctgcc
actttgtctgattgtgtcttttgccttatagaagttttttcagtttcatg
cattcccatctattaaggtttgatattagtaccggtgctaatggtgttct
cttggtaaggtcttctatgccaatgggttcaagactattgcctacttcct
cttctatcagcttcattgtatctggttttaggtcaaagtctttgatccgt
ttggagttgagctttatgcgggatggtaagtgtggatctatttgtgtttt
tctacatgtacaggtctagtttgaccagcatgatcagataaactttaata
cattgaatcagatttctatctaaaccttcttattcagagattattgttca
agtgttcaagtacaataataatacagtatgtcaagtgaccacagtatccc
aagtacttttatttcacttaaagaaaatgtttgtgtcttatctgctcagc
acatgctgggaatattcatttcattatgaaactttgcaatttggagtgct
atcaaaggatggcctaaaggcattcagatcattggtctggactcaatgct
ctttatcacctgtcctatcagggctatgtggaatgaaaccagggtaaagg
acaatgatgaaagttggtcttagccttttgctgctgacaggcactatacg
ctacctcaggggagggttctgtgtcttccttttacttcagatttattttc
aagaaagatttgattgtctatacttctcttactaaagcacataagtttgc
aagcttattatcaaatcgagcccagtaaacatggaaagattggaaaagct
aaggattgtgtaaccccatatgaagacagtagtctcaactaaccagaccc
tgagattcttagaactgagccacacaggcagcatacaccagctggtccac
acacacatttagcagagactgcttgtctggtctagtgggagaatttgcac

gaattcttctgccaaatcctccagagagctagaattacaggcttgtacgg
ccatgaccagcttctttgctggtttgtttgtttttatgacttaattcatt
taaaaattcttgattgaaacactctgacctgtctgacctgtgtacaactc
agtcctgttgacctactctctgcaaggatgccatttgatttatttgggat
gcctgctccttgggaagatgctgggaatctattcagtccattctgaagtt
ccgtttcttaatgtaagtgggactttgtggtggagactttgggtattcaa
ggtgcagaattggttacattgtgcatttttaatagagaaatatggtcttc
aagagacaaaagttgctgttaaaagttaaagcatgtttaaaaaaaaaaac
agttggaggaaacctcctgacagtgtaatgaccgggtatgagcatttgag
cccagcaaatataattttttattctaaatcatatctttattttttctttt
attggatattttctcccctctggaaactcccttttccatctccctctcct
tacctttatgagtgtgttcccccacccacccacccactcctgccttccca
cccactcctgccttcccacccactcctgctttcccacccctggcattccc
ctacactagggcattgaaccccctcaggcccaagggcccatccttccacg
gatgtccaacaaggccatcctctgccacatatgtggtagagaccttggtc
ttccacatgaataattgggttggtggtacagtcccctggaactccagggt
atcttgtcaattgaccctgtgctcccttcttgggcctgataacccctcag
ttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53939964_53941075
seq2: B6Ng01-136H05.b_43_1142

seq1  GAATTCTCTGTTTAGATCTATAACCCATTTTTAATTGAATTATTTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGATCTATAACCCATTTTTAATTGAATTATTTAGGAT  50

seq1  GTTTCAATGTCTAGTTTCTTGAGTTCTTTTTATATTTTGGATATTAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATGTCTAGTTTCTTGAGTTCTTTTTATATTTTGGATATTAGTCC  100

seq1  TTTATCAGCTACAGAGTTGGCAAAAATCTTTTCCTGTTCCATAGGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGCTACAGAGTTGGCAAAAATCTTTTCCTGTTCCATAGGCTGCC  150

seq1  ACTTTGTCTGATTGTGTCTTTTGCCTTATAGAAGTTTTTTCAGTTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCTGATTGTGTCTTTTGCCTTATAGAAGTTTTTTCAGTTTCATG  200

seq1  CATTCCCATCTATTAAGGTTTGATATTAGTACCGGTGCTAATGGTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCATCTATTAAGGTTTGATATTAGTACCGGTGCTAATGGTGTTCT  250

seq1  CTTGGTAAGGTCTTCTATGCCAATGGGTTCAAGACTATTGCCTACTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAAGGTCTTCTATGCCAATGGGTTCAAGACTATTGCCTACTTCCT  300

seq1  CTTCTATCAGCTTCATTGTATCTGGTTTTAGGTCAAAGTCTTTGATCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCAGCTTCATTGTATCTGGTTTTAGGTCAAAGTCTTTGATCCGT  350

seq1  TTGGAGTTGAGCTTTATGCGGGATGGTAAGTGTGGATCTATTTGTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGAGCTTTATGCGGGATGGTAAGTGTGGATCTATTTGTGTTTT  400

seq1  TCTACATGTACAGGTCTAGTTTGACCAGCATGATCAGATAAACTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGTACAGGTCTAGTTTGACCAGCATGATCAGATAAACTTTAATA  450

seq1  CATTGAATCAGATTTCTATCTAAACCTTCTTATTCAGAGATTATTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATCAGATTTCTATCTAAACCTTCTTATTCAGAGATTATTGTTCA  500

seq1  AGTGTTCAAGTACAATAATAATACAGTATGTCAAGTGACCACAGTATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAAGTACAATAATAATACAGTATGTCAAGTGACCACAGTATCCC  550

seq1  AAGTACTTTTATTTCACTTAAAGAAAATGTTTGTGTCTTATCTGCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTTTATTTCACTTAAAGAAAATGTTTGTGTCTTATCTGCTCAGC  600

seq1  ACATGCTGGGAATATTCATTTCATTATGAAACTTTGCAATTTGGAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGGGAATATTCATTTCATTATGAAACTTTGCAATTTGGAGTGCT  650

seq1  ATCAAAGGATGGCCTAAAGGCATTCAGATCATTGGTCTGGACTCAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGATGGCCTAAAGGCATTCAGATCATTGGTCTGGACTCAATGCT  700

seq1  CTTTATCACCTGTCCTATCAGGGCTATGTGGAATGAAACCAGGGTAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCACCTGTCCTATCAGGGCTATGTGGAATGAAACCAGGGTAAAGG  750

seq1  ACAATGATGAAAGTTGGTCTTAGCCTTTTGCTGCTGACAGGCACTATACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATGAAAGTTGGTCTTAGCCTTTTGCTGCTGACAGGCACTATACG  800

seq1  CTACCTCAGGGGAGGGTTCTGTGTCTTCCTTTTACTTCAGATTTATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCAGGGGAGGGTTCTGTGTCTTCCTTTTACTTCAGATTTATTTTC  850

seq1  AAGAAAGATTTGATTGTCTATACTTCTCTTACTAAAGCACATAAGTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGATTTGATTGTCTATACTTCTCTTACTAAAGCACATAAGTTTGC  900

seq1  AAGCTTATTATCAAATCGAGCCCAGTAAACATGGAAAGATTGGAAAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGCTTATTATCAAATCGAGCCCAGTAAACATGGAAAGATTGG-AAAAGC  949

seq1  TAAGGATTGTGTAACCCCATATGAAGACCAGTAGTCTCAACTAACCCAGA  1000
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TAAGGATTGTGTAACCCCATATGAAGA-CAGTAGTCTCAACTAA-CCAGA  997

seq1  CCCCTGAGATCTCTTAGACACTGAGCCACCAACCAGGCAGCATACACCAG  1050
       ||||||||| ||||||| ||||||||||    |||||||||||||||||
seq2  -CCCTGAGAT-TCTTAGA-ACTGAGCCAC---ACAGGCAGCATACACCAG  1041

seq1  CTGGTCCACACACACATATAGCAGAGGACTGCCTGGTCTGGTCTCAGTGG  1100
      ||||||||||||||||| ||||||| ||||| || ||||||||| |||||
seq2  CTGGTCCACACACACATTTAGCAGA-GACTG-CTTGTCTGGTCT-AGTGG  1088

seq1  GAGAATATGCAC  1112
      |||||| |||||
seq2  GAGAATTTGCAC  1100

seq1: chr15_54121375_54122232
seq2: B6Ng01-136H05.g_66_920 (reverse)

seq1  AGGAACTGAAGGGGTTTGCAGGCCCAAGAGGGGAGCAACAGGGTCAACTG  50
      |||||||| |||||||  ||||||||||| |||||| |||||||||| ||
seq2  AGGAACTG-AGGGGTTATCAGGCCCAAGAAGGGAGC-ACAGGGTCAATTG  48

seq1  GCAAGATACCCCTGGAGTTCCAGGGGGACTGTACCACCAACCAAATAATA  100
       ||||||| ||||||||||||| ||||||||||||||||||| ||| || 
seq2  ACAAGATA-CCCTGGAGTTCCA-GGGGACTGTACCACCAACCCAATTATT  96

seq1  CATGTGGAAGACCCAGGTCTCTACCACATATGTGGCAGAGGATGGCCTTG  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATGTGGAAGACCAAGGTCTCTACCACATATGTGGCAGAGGATGGCCTTG  146

seq1  TTGGACATCCGTGGGAGGATGGGCCCTTGGGCCTGAGGGGGTTCAATGCC  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGACATCCGTGGAAGGATGGGCCCTTGGGCCTGAGGGGGTTCAATGCC  196

seq1  CTAGTGTAGGGGAATGCCA-GGGTGGGAAGGCAGGAGTGGGTGGGAAGGC  249
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CTAGTGTAGGGGAATGCCAGGGGTGGGAAAGCAGGAGTGGGTGGGAAGGC  246

seq1  AGGAGTGGGTGGGAAGGCAGGAGTGGGTGGGTGGGTGGGGGAACACACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGGTGGGAAGGCAGGAGTGGGTGGGTGGGTGGGGGAACACACTC  296

seq1  ATAAAGGTAAGGAGAGGGAGATGGAAAAGGGAGTTTCCAGAGGGGAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGTAAGGAGAGGGAGATGGAAAAGGGAGTTTCCAGAGGGGAGAAA  346

seq1  ATATCCAATAAAAGAAAAAATAAAGATATGATTTAGAATAAAAAATTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATAAAAGAAAAAATAAAGATATGATTTAGAATAAAAAATTATA  396

seq1  TTTGCTGGGCTCAAATGCTCATACCCGGTCATTACACTGTCAGGAGGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGGCTCAAATGCTCATACCCGGTCATTACACTGTCAGGAGGTTT  446

seq1  CCTCCAACTGTTTTTTTTTTTAAACATGCTTTAACTTTTAACAGCAACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACTGTTTTTTTTTTTAAACATGCTTTAACTTTTAACAGCAACTT  496

seq1  TTGTCTCTTGAAGACCATATTTCTCTATTAAAAATGCACAATGTAACCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTGAAGACCATATTTCTCTATTAAAAATGCACAATGTAACCAA  546

seq1  TTCTGCACCTTGAATACCCAAAGTCTCCACCACAAAGTCCCACTTACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACCTTGAATACCCAAAGTCTCCACCACAAAGTCCCACTTACATT  596

seq1  AAGAAACGGAACTTCAGAATGGACTGAATAGATTCCCAGCATCTTCCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGGAACTTCAGAATGGACTGAATAGATTCCCAGCATCTTCCCAA  646

seq1  GGAGCAGGCATCCCAAATAAATCAAATGGCATCCTTGCAGAGAGTAGGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGCATCCCAAATAAATCAAATGGCATCCTTGCAGAGAGTAGGTC  696

seq1  AACAGGACTGAGTTGTACACAGGTCAGACAGGTCAGAGTGTTTCAATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACTGAGTTGTACACAGGTCAGACAGGTCAGAGTGTTTCAATCAA  746

seq1  GAATTTTTAAATGAATTAAGTCATAAAAACAAACAAACCAGCAAAGAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAAATGAATTAAGTCATAAAAACAAACAAACCAGCAAAGAAGC  796

seq1  TGGTCATGGCCGTACAAGCCTGTAATTCTAGCTCTCTGGAGGATTTGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGGCCGTACAAGCCTGTAATTCTAGCTCTCTGGAGGATTTGGCA  846

seq1  GAAGAATTC  858
      |||||||||
seq2  GAAGAATTC  855