BAC Information

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BAC

Clone NameB6Ng01-137B23
Chromosome15 (Build37)
Map Location 103,031,162 - 103,202,542
singlet/doubletdoublet
Overlap geneCbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
Upstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
Downstream gene1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137B23.bB6Ng01-137B23.g
ACCDH936719DH936720
length478849
definitionDH936719|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B23, 5' end.DH936720|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,031,162 - 103,031,645)(103,201,699 - 103,202,542)
sequence
ttaattttacactctttcttcgtagcaaaaatacaactgtaaagtgaagc
acaattcctctcaccatttcattaagaacattaagtcaccgcaggaatct
gttgctccgatgatcttttctggttccagtcctctctcaaagccccgagc
gatatcattgctttgctataaataggacaggaaagattagagcttgtaga
aatcaaggaaaaaccaaaccaaaccaaacctgtttttcagaacaacaaat
catcgcctttgttagtatcacctggtatcatttgtcttcagttcagaaaa
atccttacaactcaagaaatataataccgacctaggtcaatcagagacag
caatgttaagagatacttttgcaataagatgtagtcatcttttctggtat
tccttgcaaatgattaagaagggacccccacgccgggcatggtggtgcac
gcttttactcccagtactcggaaggcag
gaattccagccacagagactttctgtgttatacattgttattcattgtta
tacaatgcttgctacaacagacacctggaacccttgtaaggtcactctaa
acccagtgatttagctctgccataggttgactcactgaagggtaagaagg
tctgcctattcttagccttgcacatgatccctagaaaacaaatgtgctca
ttgtgaagcgatgatggacaaggaggaatctgctgccaaggaaggagtgt
gtgtgtttgtttggggtaagtagagagatgaagagagccaaaggtctagt
gatctcctgaggaggattttttttcctgaaaagcaagcaggtagttacac
tgggctctgtcttcagcttcatgctatgtgttaaggacaaagtatatacc
atcacacacacacacacacacacacacacacacacacacacacactccta
ccagatcacagatactgtcatctctatagaaccagaaagctctgtagcta
ctgaaatgtctggatttggggtacaatttctggctttcttattctccctg
actgagccctgcccatgtttcaacatcctgtcttggctggaaatacttcc
agagagagctagaaatggcaggcagacttgtggaagtatgagggaagtcc
tggctcatccacaaccctttgcagtctcaatcggatgtgcactgtaaatc
ctggtgcttcaggtccctccctgatggggctccagatgtgctcacatctg
ggaggatcatcctaggaagctggacactcccacttacagctcccaccccg
ggatgggtctcttcttttcagtttcagacctttagctaaagaaagtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103031162_103031645
seq2: B6Ng01-137B23.b_36_519

seq1  GAATTCTCAATTTTACACTCTTTCTTCGTAGCAAAAATACAACTGTAAAG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTTTACACTCTTTCTTCGTAGCAAAAATACAACTGTAAAG  50

seq1  TGAAGCACAATTCCTCTCACCATTTCATTAAGAACATTAAGTCACCGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACAATTCCTCTCACCATTTCATTAAGAACATTAAGTCACCGCAG  100

seq1  GAATCTGTTGCTCCGATGATCTTTTCTGGTTCCAGTCCTCTCTCAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTTGCTCCGATGATCTTTTCTGGTTCCAGTCCTCTCTCAAAGCC  150

seq1  CCGAGCGATATCATTGCTTTGCTATAAATAGGACAGGAGAGATTAGAGCT  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCGAGCGATATCATTGCTTTGCTATAAATAGGACAGGAAAGATTAGAGCT  200

seq1  TGTAGAAATCAAGGAAAAACCAAACCAAACCAAACCTGTTTTTCAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATCAAGGAAAAACCAAACCAAACCAAACCTGTTTTTCAGAACA  250

seq1  ACAAATCATCGCCTTTGTTAGTATCACCTGGTATCATTTGTCTTCAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCATCGCCTTTGTTAGTATCACCTGGTATCATTTGTCTTCAGTTC  300

seq1  AGAAAAATCCTTACAACTCAAGAAATATAATACCGACCTAGGTCAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCCTTACAACTCAAGAAATATAATACCGACCTAGGTCAATCAG  350

seq1  AGACAGCAATGTTAAGAGATACTTTTGCAATAAGATGTAGTCATCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAATGTTAAGAGATACTTTTGCAATAAGATGTAGTCATCTTTTC  400

seq1  TGGTATTCCTTGCAAATGATTAAGAAGGGACCCCCACGCCGGGCATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCCTTGCAAATGATTAAGAAGGGACCCCCACGCCGGGCATGGTG  450

seq1  GTGCACGCTTTTACTCCCAGTACTCGGAAGGCAG  484
      ||||||||||||||||||||||||||||||||||
seq2  GTGCACGCTTTTACTCCCAGTACTCGGAAGGCAG  484

seq1: chr15_103201699_103202542
seq2: B6Ng01-137B23.g_69_917 (reverse)

seq1  GATACTT--CTTAGCTAAAGGTCTGGAAGCTG-AAAGAAGAGACCCAT-C  46
      |||||||   |||||||||||||| ||| ||| ||||||||||||||| |
seq2  GATACTTTCTTTAGCTAAAGGTCT-GAAACTGAAAAGAAGAGACCCATCC  49

seq1  CGGGGTGGGAGCTGTAAGTGGGAGTGT-CAGCTTCCTGGGATGGCCTTCC  95
      ||||||||||||||||||||||||||| ||||||||| |||||  | |||
seq2  CGGGGTGGGAGCTGTAAGTGGGAGTGTCCAGCTTCCTAGGATGATCCTCC  99

seq1  CAGATGTGAGCACATCTGGAG-CCCATCAGGGAGGGACCTGGAGCACCAG  144
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CAGATGTGAGCACATCTGGAGCCCCATCAGGGAGGGACCTGAAGCACCAG  149

seq1  GATTTCCAGTGCACATCCGATTGAGACTGCAAAGGGTTGTGGATGAGCCA  194
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAGTGCACATCCGATTGAGACTGCAAAGGGTTGTGGATGAGCCA  199

seq1  GGACTTCCCTCATACTTCCACAAGTCTGCCTGCCATTTCTAGCTCTCTCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCCTCATACTTCCACAAGTCTGCCTGCCATTTCTAGCTCTCTCT  249

seq1  GGAAGTATTTCCAGCCAAGACAGGATGTTGAAACATGGGCAGGGCTCAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATTTCCAGCCAAGACAGGATGTTGAAACATGGGCAGGGCTCAGT  299

seq1  CAGGGAGAATAAGAAAGCCAGAAATTGTACCCCAAATCCAGACATTTCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAATAAGAAAGCCAGAAATTGTACCCCAAATCCAGACATTTCAG  349

seq1  TAGCTACAGAGCTTTCTGGTTCTATAGAGATGACAGTATCTGTGATCTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAGAGCTTTCTGGTTCTATAGAGATGACAGTATCTGTGATCTGG  399

seq1  TAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAT  449

seq1  GGTATATACTTTGTCCTTAACACATAGCATGAAGCTGAAGACAGAGCCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATACTTTGTCCTTAACACATAGCATGAAGCTGAAGACAGAGCCCA  499

seq1  GTGTAACTACCTGCTTGCTTTTCAGGAAAAAAAATCCTCCTCAGGAGATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACTACCTGCTTGCTTTTCAGGAAAAAAAATCCTCCTCAGGAGATC  549

seq1  ACTAGACCTTTGGCTCTCTTCATCTCTCTACTTACCCCAAACAAACACAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCTTTGGCTCTCTTCATCTCTCTACTTACCCCAAACAAACACAC  599

seq1  ACACTCCTTCCTTGGCAGCAGATTCCTCCTTGTCCATCATCGCTTCACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTTCCTTGGCAGCAGATTCCTCCTTGTCCATCATCGCTTCACAA  649

seq1  TGAGCACATTTGTTTTCTAGGGATCATGTGCAAGGCTAAGAATAGGCAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACATTTGTTTTCTAGGGATCATGTGCAAGGCTAAGAATAGGCAGA  699

seq1  CCTTCTTACCCTTCAGTGAGTCAACCTATGGCAGAGCTAAATCACTGGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTACCCTTCAGTGAGTCAACCTATGGCAGAGCTAAATCACTGGGT  749

seq1  TTAGAGTGACCTTACAAGGGTTCCAGGTGTCTGTTGTAGCAAGCATTGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGACCTTACAAGGGTTCCAGGTGTCTGTTGTAGCAAGCATTGTA  799

seq1  TAACAATGAATAACAATGTATAACACAGAAAGTCTCTGTGGCTGGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGAATAACAATGTATAACACAGAAAGTCTCTGTGGCTGGAATTC  849