BAC Information

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BAC

Clone NameB6Ng01-137H19
Chromosome18 (Build37)15 (Build37)
Map Location 34,009,598 - 34,010,2168,959,670 - 8,960,459
singlet/doubletsingletsinglet
Overlap geneEpb4.1l4a
Upstream geneWdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
Downstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137H19.bB6Ng01-137H19.g
ACCDH936993DH936994
length654792
definitionDH936993|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H19, 5' end.DH936994|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,009,598 - 34,010,216)(8,959,670 - 8,960,459)
sequence
gaattctgagatatgagcaacttgtggacttatgacatgaaaaaaaaaaa
cacccctggcttctctaacctattactccgcttctgccacatgcaaggag
agtcttaaaacattgactctgtattttaaaaattgttaggcttggtctgg
tagaacagtcagagaccagcctggacaacttatcagaaccctgtcccaaa
acaaatacacacacacacatgcacacaaaatattattattatgttttaat
tgtatgtgggtgcgtttgcatatggctttggggcgggatttaccagcggt
ggtaaacaacccgcctcgagtgctgaaaccctaacctgggtcctcaggaa
gaagataagctctctttactgctaagctacctctccagtcccccaaaata
aaaagtacgaaaaaactggggatacatatcagagatgagggatgcggacc
tagattcaaccccaaaaactgggggaaaaaaagattccctttttgccatt
atggctgggttttcctctattttaaattctggttattgggttatttatta
aggtaatactttcggaaattttagccagtgaacatttgtaagcttcgatc
tcccacccccatctccccgccccaaacaactgggcggaaaatcatcctgg
gccc
gaattctgggaaagagctccagacaggagatttgccagtgagacccgcca
gtgggacaagccaatgagggggattccccagccagactctgaggaagaaa
caagtgtggggaactgaggaaaaggtaacttagcaggccctgctgtggga
cagagctagatgatcgggtttacttaaatgagctagttaagagcttgcag
agataaggccgagctttcataattaataagaggtcttcatgtcccatgtt
caagagctgtgtctcaaagacaaccaattatagtcaacaggaaggagtcc
ttgctatgccattgggaggattggacttcctctcctacctcctctgtgac
caactgggcgtcccacataataactgccactccagctttgagggattcgt
tgtgaaagaacgtagtggggaaaccccgactcaactccccattcagcgtg
cacccctgaatcacaaacaaacagaccgtcttgatgttaataccagaggt
actttaatggtggagctgccggtcaaaacgtatctcacgcttgagacagt
ggatttgaccacaaggcttgcaacctaggggattttgtataaaaggggct
ggagctggggctggggctggcgctggggctggggctggggctgggggaga
aattggcgcgatttcacgggattggttcagtaaacatcagccggggagga
attggcgtggattcacatgataggcgcgttttaaacatccacgcactgta
ccctgcacattacattttactggggtcggaagggcgggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34009598_34010216
seq2: B6Ng01-137H19.b_59_676

seq1  AGCAACAGCTGGACTTATTACAGAAAAAAAAAAAACACCCCTGTCTTCTC  50
      ||||||   ||||||||| |||  ||||||||||||||||||| ||||||
seq2  AGCAACTTGTGGACTTATGACATGAAAAAAAAAAACACCCCTGGCTTCTC  50

seq1  TAACCTATAACTCCACTTCTGCCACATGCAAGGAGAGTCTTAAAACAATG  100
      |||||||| ||||| |||||||||||||||||||||||||||||||| ||
seq2  TAACCTATTACTCCGCTTCTGCCACATGCAAGGAGAGTCTTAAAACATTG  100

seq1  ACTCTGTATTTTAAAAATTGTTAGGCTTGGTCTGGTAGAACAGTCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATTTTAAAAATTGTTAGGCTTGGTCTGGTAGAACAGTCAGAGA  150

seq1  CCAGCCTGGACAACTTATCAAGACCCTGGCCCAAAACAAATACACACACA  200
      ||||||||||||||||||||  |||||| |||||||||||||||||||||
seq2  CCAGCCTGGACAACTTATCAGAACCCTGTCCCAAAACAAATACACACACA  200

seq1  CACATGCACACAAAATATTATTATTATGTTTTAATTGTATGTGGGTGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACACAAAATATTATTATTATGTTTTAATTGTATGTGGGTGCGT  250

seq1  TTGCATATGGCTTTGGGGCTGGAGTTACAGGTGGTTGTAAGCCACCTGCC  300
      ||||||||||||||||||| ||| ||||  | ||| |||| | ||| |||
seq2  TTGCATATGGCTTTGGGGCGGGATTTACCAGCGGTGGTAAACAACCCGCC  300

seq1  GCGAGTGCTGAAACCCTAACCTGGGTCCTCAGGAAGAACAGCAAGTACTC  350
       ||||||||||||||||||||||||||||||||||||| |  |||  |||
seq2  TCGAGTGCTGAAACCCTAACCTGGGTCCTCAGGAAGAAGA-TAAGCTCTC  349

seq1  TTTACTGCTAAGCTACCTCTCCAGTCCCCCAAAATAAAAACTAGGAAGAA  400
      |||||||||||||||||||||||||||||||||||||||| || ||| ||
seq2  TTTACTGCTAAGCTACCTCTCCAGTCCCCCAAAATAAAAAGTACGAAAAA  399

seq1  ACTGGGGATACAGATCAGTGGTAGGGCATGCAGACCTAGATTCAACCCCC  450
      |||||||||||| ||||| | |  || |||| ||||||||||||||||| 
seq2  ACTGGGGATACATATCAGAGATGAGGGATGCGGACCTAGATTCAACCCCA  449

seq1  AAAACTGGGGGAAAAAAAGATTCCATTTTTGCCATTTTGTCAAAGTTTTC  500
      |||||||||||||||||||||||| ||||||||||| || |   ||||||
seq2  AAAACTGGGGGAAAAAAAGATTCCCTTTTTGCCATTATGGCTGGGTTTTC  499

seq1  AAATATTTTAAATAACTATAGCAA---GGTTATTTATTAAGGTAATACTT  547
         ||||||||||   | | |  |   |||||||||||||||||||||||
seq2  CTCTATTTTAAAT---TCTGGTTATTGGGTTATTTATTAAGGTAATACTT  546

seq1  TCGTTTCCTTTAGCCAGTGAACATTTGTAAGCTTCTCTCTCCCACCCCCA  597
      |||     |||||||||||||||||||||||||||  |||||||||||||
seq2  TCGGAAATTTTAGCCAGTGAACATTTGTAAGCTTCGATCTCCCACCCCCA  596

seq1  TCTCCCCGCCCCTGCCAACTGG  619
      ||||||||||||   |||||||
seq2  TCTCCCCGCCCCAAACAACTGG  618

seq1: chr15_8959670_8960459
seq2: B6Ng01-137H19.g_67_858

seq1  GAATTCTGGGAAAGAGCTCCAGACAGGAGATTTGCCAGTGAGACACGCCA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATTCTGGGAAAGAGCTCCAGACAGGAGATTTGCCAGTGAGACCCGCCA  50

seq1  GTGGGACAAGCCAATGAGGGGGATTCACCAGCCAGACTCTGAGGAAGAAA  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGGGACAAGCCAATGAGGGGGATTCCCCAGCCAGACTCTGAGGAAGAAA  100

seq1  CAAGTGTGGGGAACTGAGGAAAAGGTAACTTAGCAAGCCCTGCTGTGGGA  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGTGTGGGGAACTGAGGAAAAGGTAACTTAGCAGGCCCTGCTGTGGGA  150

seq1  CAGAGCTAGATGATCGGGTTTACTTAAATGAGCTAGTTAAGAGCTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGATGATCGGGTTTACTTAAATGAGCTAGTTAAGAGCTTGCAG  200

seq1  AGATAAGGCCGAGCTTTCATAATTAATAAGAGGTCTTCATGTCACATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATAAGGCCGAGCTTTCATAATTAATAAGAGGTCTTCATGTCCCATGTT  250

seq1  CAGGAGCTGTGTCTCAAAGACAACCAATTATAGTCAACAGGAAGGAGTCC  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTGTGTCTCAAAGACAACCAATTATAGTCAACAGGAAGGAGTCC  300

seq1  TTGCTAAGCCATTGTGAGGATTGGACTTCAGCTCCTAGCTCCTCTGTGAC  350
      |||||| ||||||| ||||||||||||||  |||||| ||||||||||||
seq2  TTGCTATGCCATTGGGAGGATTGGACTTCCTCTCCTACCTCCTCTGTGAC  350

seq1  CAACTGGGCGTCCCACAGAATAACTGCAACTCCAGCTTTGAGGGATTCGT  400
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CAACTGGGCGTCCCACATAATAACTGCCACTCCAGCTTTGAGGGATTCGT  400

seq1  TGTGAAAGAACGTAGTGGGGAAACCCCGACTCAACTCCCCATTCAGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAACGTAGTGGGGAAACCCCGACTCAACTCCCCATTCAGCGTG  450

seq1  CACCCAAGAATCACAAACAAACAGACCGTCTTGATGTAAATACAAGAGGT  500
      |||||  |||||||||||||||||||||||||||||| ||||| ||||||
seq2  CACCCCTGAATCACAAACAAACAGACCGTCTTGATGTTAATACCAGAGGT  500

seq1  AGTTTAATGGTGGAGCTGCGGGTCGAAACGTATCTCACGCAGGAGACAGT  550
      | ||||||||||||||||| |||| |||||||||||||||  ||||||||
seq2  ACTTTAATGGTGGAGCTGCCGGTCAAAACGTATCTCACGCTTGAGACAGT  550

seq1  GGATTTGACCACAAGGCTTGGAAGCTAGGGGATTTTGTAGAAAAGGGGCT  600
      |||||||||||||||||||| || ||||||||||||||| ||||||||||
seq2  GGATTTGACCACAAGGCTTGCAACCTAGGGGATTTTGTATAAAAGGGGCT  600

seq1  GGGGCTGGGGCTGGGGCTGGGGCTGGGGCTGGGGCTGGGGCTGGGGGAGA  650
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAGCTGGGGCTGGGGCTGGCGCTGGGGCTGGGGCTGGGGCTGGGGGAGA  650

seq1  AATTGGCACGATTTCACATGATTGGTTCATTTAAACATCAG-CAGGGAGG  699
      ||||||| |||||||||  ||||||||||  |||||||||| | ||||||
seq2  AATTGGCGCGATTTCACGGGATTGGTTCA-GTAAACATCAGCCGGGGAGG  699

seq1  AATTGGCGTGGTTTCACATGATTGG-TCCATTTAAACATCAGCAGACTGT  748
      ||||||||||| |||||||||| ||  |  ||||||||||  |  |||||
seq2  AATTGGCGTGGATTCACATGATAGGCGCGTTTTAAACATCCACGCACTGT  749

seq1  A-CATGCAGATAACATTTAACTTAGGTCAGAAGGGCGGGAGAT  790
      | | |||| || |||||| |||  |||| ||||||||||||||
seq2  ACCCTGCACATTACATTTTACTGGGGTCGGAAGGGCGGGAGAT  792