BAC Information

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BAC

Clone NameB6Ng01-138O24
Chromosome16 (Build37)15 (Build37)
Map Location 55,386,405 - 55,386,94652,797,954 - 52,799,039
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138O24.bB6Ng01-138O24.g
ACCDH938055DH938056
length1,0251,086
definitionDH938055|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O24, 5' end.DH938056|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,386,405 - 55,386,946)(52,797,954 - 52,799,039)
sequence
gaattcctgatctttccaagacttttatcatgaatggtgttggattttgt
caaatgctttctccacatctaacgagatgttcatgtggtttttgtcttta
agtttgtttatatagtggattacattgatggatttctgtatataaaacca
tccctgcatccatggaatgaaatctacttggtcaggattgatgattgttt
tgatgtgttcttggattcagttagcgagaacttttttgatgatttttgcc
acaatattcataagggaaattggtctgaatttctctatctttgttgggtc
tttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgg
gtaggattccctctacttctattttgtggaatagtttgtgcagaactggg
attagatcttctttgaaagtctggtagaactctgcactaaacccatctgg
ccctgggctttttttttttttttttagttgggagactattaatgactgat
tatatttctttaggggatataggactgtttagatcattaacctgatcctg
atttaaatttgctatctggtatctgtctagaaactaatccgtttcatcaa
ggttctccagtttttttgagtatagccttttgtagaaggatctgatggtg
ttttggatttcttcagggtctgttgttatgtctcccttttcatttctgat
atttttaattaggatgctgtccctgtgccctctagtgagtctggtaaggg
tttatctatcttgttgattttctccaagaatcagctcctcatttggttaa
tttttgaatagttcttcttgtttccacttggttgatttcaccccctgagt
tgattattttctgccatctactcttcttgggtgaatttgcttccttttgt
tctagagcttttaggtgtattgtcagctgctagcgttgctctctctagtt
tcttttgaggcactcagagctatgagttttcctcttagaaatgctttcat
gtgttcccataagtttgggtatgta
gaattccaacacagagaacacagaaaccttgaagttgtaacggaggctgg
agggggagtagtatttccaataaccacttggacagtttacaggaagacta
cacatgagctggggttagacactaagcttttcatatccagagattatcac
cgtgtatttttggttctttgtatgttttacttgtaagttttaaaagctta
actctaaacaatatatggggaatatttcctcattgatattccttcctagg
gtcgaaaagagtacagtttcctgttctaaaactcatttaaaaaaaaccct
tttaagacagaatttccaagaacaccatggtcactagaagcatgggatat
acatgcctattttctttgtgatgggggatgtgtgagcatgggcccaaaca
tctgaaactgtgaaccaacccaatcttgtctctttcagaatgtttctttg
aggtattttatgacagtcatacaaagccgactaacacaaataccaatgcc
acaagttagtctaggctttctgaagacagaacccagaagcaaacaggcct
gtctcaaaccctcaaggtgtcagacttactggttagtcaagatcaaacag
gtgataattacagtcagtgtcacaggggaagaagagagattgtgtgtgtg
tgtgtgtgcatgtggatgcatgtgcccatgcttgcatgagtgtgtagagg
tcaggagttacagagagtgtctgtctttcctctctccttcagcttgtcat
ttgagactcggctcatcactgaatctggggtttacactggctggccagtg
ggcttcaagtctgactcttttgcactggggtttcagccagcactatctac
catgcccaacttttccaagaagggcatggatccaatttcaggtggcttac
gctcatacagcttggcaatgtacagactaaaccatcccttgagcactgta
agcagagattttgaagtggaaaggttctgatgataagacatgctgtgcat
tttctagtatggtgaccttaatgctgatgtaactctgaatctacttttgc
acccacaaagcgaattgggcttatttaatctcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55386405_55386946
seq2: B6Ng01-138O24.b_537_1071 (reverse)

seq1  ACATACCCAAACTTATGGGACACA-ATGAAAGCATTTCTAAGAGGAAAAC  49
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  ACATACCCAAACTTATGGGA-ACACATGAAAGCATTTCTAAGAGGAAAAC  49

seq1  TCATAGCTCTGAGTGTCTCAAAAAAAAGAAACTAGAGAGAGCACACACTA  99
      ||||||||||||||| |||    |||||||||||||||||||| || |||
seq2  TCATAGCTCTGAGTGCCTC----AAAAGAAACTAGAGAGAGCA-ACGCTA  94

seq1  GCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCA  149
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGC-TGACAATACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCA  143

seq1  CCCAAGAGGAGTAGAAGGCAGGAAATAATCAAACTCA-GGGGCGAAATCA  198
      ||||||| ||||||| ||||| |||||||| |||||| |||| |||||||
seq2  CCCAAGAAGAGTAGATGGCAGAAAATAATC-AACTCAGGGGGTGAAATCA  192

seq1  ACCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAATGAGGAGC  248
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  ACCAAGTGGAAACAAGAAGAACTATTCAAA-AATTAACCAAATGAGGAGC  241

seq1  TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCAC  298
      || ||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TGATTCTTGGAGAAAATCAACAAGATAGATAAACCCTTA-CCAGACTCAC  290

seq1  TAGAGGGCACAGGGACAGCATCCTAATTAAAAA-GTCAGAAATGAAAAGG  347
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TAGAGGGCACAGGGACAGCATCCTAATTAAAAATATCAGAAATGAAAAGG  340

seq1  GAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTC  397
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGACATAACAACAGACCCTGAAGAAATCCAAAACACCATCAGATCCTTC  390

seq1  TACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATGAAATGAACAA  447
      ||||||||||||||||||| ||||||||||||||| ||||||| | |  |
seq2  TACAAAAGGCTATACTCAAAAAAACTGGAGAACCTTGATGAAACGGATTA  440

seq1  GTTTCTAGACAGATACCAGGTACCAAAGTTAAACCAAGATCAGATTAGTG  497
      ||||||||||||||||||| || |||| ||||| || |||||| ||| ||
seq2  GTTTCTAGACAGATACCAGATAGCAAATTTAAATCAGGATCAGGTTAATG  490

seq1  ATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTA  542
      |||||||||||||||||||||||||||||||| || |||||||||
seq2  ATCTAAACAGTCCTATATCCCCTAAAGAAATATAATCAGTCATTA  535

seq1: chr15_52797954_52799039
seq2: B6Ng01-138O24.g_67_1152 (reverse)

seq1  CTGGGAGA-TAAAT-AGCACCATTCGCTTTGTGTGATGACAAAAGTGAGA  48
      |||||||| ||||| ||| | |||||||||||| | || ||||||| |||
seq2  CTGGGAGATTAAATAAGCCCAATTCGCTTTGTG-GGTG-CAAAAGT-AGA  47

seq1  CTCAGAGATTACATAAGCATTTAAGGTCACATGACTAGAAAGTGGCACAG  98
       |||||| |||||| |||| ||||||||||   |||||||| | ||||||
seq2  TTCAGAG-TTACATCAGCA-TTAAGGTCACCATACTAGAAAAT-GCACAG  94

seq1  CATGTCTCA-CATCCAGACCTTCTCAC-TCAAAATCTCTTGCTTACAGTG  146
      ||||||| | ||||   |||||  ||| |||||||||| |||||||||||
seq2  CATGTCTTATCATCAGAACCTTTCCACTTCAAAATCTC-TGCTTACAGTG  143

seq1  CTCAAGGGATGGTTTAGTCTGTACATTGCC-AGCTGTATGAGCGTAAG-C  194
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CTCAAGGGATGGTTTAGTCTGTACATTGCCAAGCTGTATGAGCGTAAGCC  193

seq1  ACCTGAAATTGGATCCATGGCCCTCTTGGAAAAGTTGGGCATGGTAGATA  244
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  ACCTGAAATTGGATCCATGCCCTTCTTGGAAAAGTTGGGCATGGTAGATA  243

seq1  GTGCTGGCTGGAACCCCAGTGCAAAAGAGTCAGACTTGAAGCCCACTGGC  294
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCTGAAACCCCAGTGCAAAAGAGTCAGACTTGAAGCCCACTGGC  293

seq1  CAGCCAGTGTAAACCCCAGATTCAGTGATGAGCCGAGTCTCAAATGACAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGTAAACCCCAGATTCAGTGATGAGCCGAGTCTCAAATGACAA  343

seq1  GCTGAAGGAGAGAGG-AAGACAGACACTCTCTGTAACTCCTGACCTCTAC  393
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGAGAGAGGAAAGACAGACACTCTCTGTAACTCCTGACCTCTAC  393

seq1  ACACTCATGCAAGCATGGGCACATGCATCCACATGCACACACACACACAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATGCAAGCATGGGCACATGCATCCACATGCACACACACACACAC  443

seq1  ACAATCTCTCTTCTTCCCCTGTGACACTGACTGTAATTATCACCTGTTTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTCTTCTTCCCCTGTGACACTGACTGTAATTATCACCTGTTTG  493

seq1  ATCTTGACTAACCAGTAAGTCTGACACCTTGAGGGTTTGAGACAGGCCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACTAACCAGTAAGTCTGACACCTTGAGGGTTTGAGACAGGCCTG  543

seq1  TTTGCTTCTGGGTTCTGTCTTCAGAAAGCCTAGACTAACTTGTGGCATTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGGGTTCTGTCTTCAGAAAGCCTAGACTAACTTGTGGCATTG  593

seq1  GTATTTGTGTTAGTCGGCTTTGTATGACTGTCATAAAATACCTCAAAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTGTTAGTCGGCTTTGTATGACTGTCATAAAATACCTCAAAGAA  643

seq1  ACATTCTGAAAGAGACAAGATTGGGTTGGTTCACAGTTTCAGATGTTTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGAAAGAGACAAGATTGGGTTGGTTCACAGTTTCAGATGTTTGG  693

seq1  GCCCATGCTCACACATCCCCCATCACAAAGAAAATAGGCATGTATATCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGCTCACACATCCCCCATCACAAAGAAAATAGGCATGTATATCCC  743

seq1  ATGCTTCTAGTGACCATGGTGTTCTTGGAAATTCTGTCTTAAAAGGGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTAGTGACCATGGTGTTCTTGGAAATTCTGTCTTAAAAGGGTTT  793

seq1  TTTTTAAATGAGTTTTAGAACAGGAAACTGTACTCTTTTCGACCCTAGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGAGTTTTAGAACAGGAAACTGTACTCTTTTCGACCCTAGGA  843

seq1  AGGAATATCAATGAGGAAATATTCCCCATATATTGTTTAGAGTTAAGCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATCAATGAGGAAATATTCCCCATATATTGTTTAGAGTTAAGCTT  893

seq1  TTAAAACTTACAAGTAAAACATACAAAGAACCAAAAATACACGGTGATAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTACAAGTAAAACATACAAAGAACCAAAAATACACGGTGATAA  943

seq1  TCTCTGGATATGAAAAGCTTAGTGTCTAACCCCAGCTCATGTGTAGTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGATATGAAAAGCTTAGTGTCTAACCCCAGCTCATGTGTAGTCTT  993

seq1  CCTGTAAACTGTCCAAGTGGTTATTGGAAATACTACTCCCCCTCCAGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAACTGTCCAAGTGGTTATTGGAAATACTACTCCCCCTCCAGCCT  1043

seq1  CCGTTACAACTTCAAGGTTTCTGTGTTCTCTGTGTTGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTACAACTTCAAGGTTTCTGTGTTCTCTGTGTTGGAATTC  1086