BAC Information

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BAC

Clone NameB6Ng01-138P02
Chromosome15 (Build37)
Map Location 16,652,771 - 16,774,481
singlet/doubletdoublet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138P02.bB6Ng01-138P02.g
ACCDH938059DH938060
length1,1231,147
definitionDH938059|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P02, 5' end.DH938060|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,652,771 - 16,653,905)(16,773,319 - 16,774,481)
sequence
gaattcctaccagaaaaaaatatcaaaaataattgagaaagtcttatatt
aaggagaacagttactgaatttatagttacaggcaattataatgatttgc
catttctttactgaatgacttagataactgaggaaatgagacattatggg
agaagaataataggtaatgttaacgctcaaatttagtttgaacatagatg
ttcattgcattacagtgttctaagttattacttgtgttgttgttgttatt
tttaaatactgagaattaaaaccaaagacttatgcctaccagaaatatgt
tttttttaaccttgaactgttttttgtatgaacttctttatgcatgaacc
aacatttaagtcatgatcacattttatcacatgagctcacgctagatata
atctttgaacatacgttgagaaatcagatttgcgaacttgattgtaatgt
agggaatgaggagcaataacagagtattctatctctttgtagtcatcagt
tatgtcaattattaagctgtgagggaataacagcatagacagcttccctg
tgagtgaagaatattctaggcttcaagtaatcttatggtaagttgtagta
ccttaaatcttagtctaccctagcatggaaataaatatgactactctaat
tttataattgtccatagaatttccaattgtttcatagtcaatgaaagcaa
aggcataggaatgtcaaagttcatatttggcatagtccttaggtaagcat
gctacaacccgttctgaataagcaagaaaatatttgtatcgatgcaataa
cattccctatctgggtgggcctggcacagaaaaggagaatatgactccaa
caattataatttattttcccaattagaatagagtttaagataatattaac
agacaagtcataggatatatagaaattatgtcatatctctcataccaatc
agtgtgcagaatcattctgatgcattcctgtagttttttaaactcttgaa
gtctgatttcacaaaatgggtgaaaatgggtgattgatattactgttttg
tttttttgtttttttgcaggggagcagggcagaagaaacacaccattttc
ctgattctagtataggtgatatt
gaattcacggaggagaatcgttttgacaatttggaaataagctcactttt
tatcattaacagcgcaaactccctactctatttttagatattcccctcag
caaaaatgatgtcccatgaattgtcaaagcacagagataatattctttca
catagcagccaagttctattttcaacacagaattagaacattgtgagtta
ccaattaataataagtacaatgaattaccacaaatgaccaggaaaaatgc
attaaacacctaacactgaagaaaagtcatttctgtgtcctagaaaatgg
tttataaaatcaatagtattttattgatttgacttcattgaatttcaagc
aactatctgaaacagactacttgcataaaatttctgtgggaatgatacct
gaaaagaaaatataccctcagatgggtgacataaaaatcaaaatgcacac
aatgtaactcacctgtcaactctctactcaaaaatttatgctttcatttt
atgttgtacaatcaaacattaaacacaataataaaatcttgagtttttta
atatgcaatccatagaggacccaattatagatgttacagctactggttgt
gtcactatgtcaaattctacctcattttattaggtcagtgtacacagaat
atgcttttcttcttcttttttcatagggtaatgctttccagaaatgtgtt
tctcacagctgtgtacagtgaaaacactatgttcatgattgaaatggatg
ttgactatttaatgaaactacttttagtttcacaaaacataatgaaaaca
gtttttctgaccagcattattattttcttatagacagggtctcagggcat
ctctggcctccacaatgtatgtagagctatctaatccaaaatggcttcat
atttgtgatcctcatatatagctatacattctttttctatagctatccat
gtctcagattaaacttcaagcacacatctgactagattttttttcctcac
aatgtagtaaaagaagaaatctgggacaccctctgtgtatgatcttccct
agaatcgtacagctcaactgcaatgtgtggccctttactgtgctaaactc
atccctgccaataggtgttgctacttacttattgaaagcaactgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16652771_16653905
seq2: B6Ng01-138P02.b_49_1171

seq1  GAATTCCTACCAGAAAAAAATATCAAAAATAATTGAGAAAGTCTTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAGAAAAAAATATCAAAAATAATTGAGAAAGTCTTATATT  50

seq1  AAGGAGAACAGTTACTGAATTTATAGTTACAGGCAATTATAATGATTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACAGTTACTGAATTTATAGTTACAGGCAATTATAATGATTTGC  100

seq1  CATTTCTTTACTGAATGACTTAGATAACTGAGGAAATGAGACATTATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTACTGAATGACTTAGATAACTGAGGAAATGAGACATTATGGG  150

seq1  AGAAGAATAATAGGTAATGTTAACGCTCAAATTTAGTTTGAACATAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATAATAGGTAATGTTAACGCTCAAATTTAGTTTGAACATAGATG  200

seq1  TTCATTGCATTACAGTGTTCTAAGTTATTACTTGTGTTGTTGTTGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCATTACAGTGTTCTAAGTTATTACTTGTGTTGTTGTTGTTATT  250

seq1  TTTAAATACTGAGAATTAAAACCAAAGACTTATGCCTACCAGAAATATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATACTGAGAATTAAAACCAAAGACTTATGCCTACCAGAAATATGT  300

seq1  TTTTTTTAACCTTGAACTGTTTTTTGTATGAACTTCTTTATGCATGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACCTTGAACTGTTTTTTGTATGAACTTCTTTATGCATGAACC  350

seq1  AACATTTAAGTCATGATCACATTTTATCACATGAGCTCACGCTAGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAAGTCATGATCACATTTTATCACATGAGCTCACGCTAGATATA  400

seq1  ATCTTTGAACATACGTTGAGAAATCAGATTTGCGAACTTGATTGTAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAACATACGTTGAGAAATCAGATTTGCGAACTTGATTGTAATGT  450

seq1  AGGGAATGAGGAGCAATAACAGAGTATTCTATCTCTTTGTAGTCATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGAGGAGCAATAACAGAGTATTCTATCTCTTTGTAGTCATCAGT  500

seq1  TATGTCAATTATTAAGCTGTGAGGGAATAACAGCATAGACAGCTTCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAATTATTAAGCTGTGAGGGAATAACAGCATAGACAGCTTCCCTG  550

seq1  TGAGTGAAGAATATTCTAGGCTTCAAGTAATCTTATGGTAAGTTGTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAGAATATTCTAGGCTTCAAGTAATCTTATGGTAAGTTGTAGTA  600

seq1  CCTTAAATCTTAGTCTACCCTAGCATGGAAATAAATATGACTACTCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATCTTAGTCTACCCTAGCATGGAAATAAATATGACTACTCTAAT  650

seq1  TTTATAATTGTCCATAGAATTTCCAATTGTTTCATAGTCAATGAAAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTGTCCATAGAATTTCCAATTGTTTCATAGTCAATGAAAGCAA  700

seq1  AGGCATAGGAATGTCAAAGTTCATATTTGGCATAGTCCTTAGGTAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGGAATGTCAAAGTTCATATTTGGCATAGTCCTTAGGTAAGCAT  750

seq1  GCTACAACCCGTTCTGAATAAGCAAGAAAATATTTGTATCGATGCAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACCCGTTCTGAATAAGCAAGAAAATATTTGTATCGATGCAATAA  800

seq1  CATTCCCTATCTGGGTGGGCCTGGCACAGAAAAGGAGAATATGACTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTATCTGGGTGGGCCTGGCACAGAAAAGGAGAATATGACTCCAA  850

seq1  CAATTATAATTTATTTTCCCAATTAGAATAGAGTTTAAGATAATATTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAATTTATTTTCCCAATTAGAATAGAGTTTAAGATAATATTAAC  900

seq1  AGACAAGTCATAGGATATAATAGAAATTATGTCATATCTCTCATACCAAT  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGACAAGTCATAGGATAT-ATAGAAATTATGTCATATCTCTCATACCAAT  949

seq1  CAGTGTGCAGAATCATTCTGATGCAATTCCTGTAGTTTTTTAAACTCTTG  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGTGTGCAGAATCATTCTGATGC-ATTCCTGTAGTTTTTTAAACTCTTG  998

seq1  AAGGTCTGATTTCACAAAATGGGTGAAAAATTGGGTGATTGATATTACTG  1050
      || ||||||||||||||||||||||||||  |||||||||||||||||||
seq2  AA-GTCTGATTTCACAAAATGGGTGAAAA--TGGGTGATTGATATTACTG  1045

seq1  TTTTGTTTTTTTGTTTTTTTTGCAGGGGGAGCAGGGGCAAGAAGAAACAC  1100
      ||||||||||||| |||||||||| |||||||||||   |||||||||||
seq2  TTTTGTTTTTTTG-TTTTTTTGCA-GGGGAGCAGGG--CAGAAGAAACAC  1091

seq1  ACATTTTCCCTTGGATTCTAGTATAGTTTGATATT  1135
      ||  ||| |||  |||||||||||||  |||||||
seq2  ACCATTTTCCT--GATTCTAGTATAG-GTGATATT  1123

seq1: chr15_16773319_16774481
seq2: B6Ng01-138P02.g_67_1213 (reverse)

seq1  ATTCAGTTGCTTTCAATTAAAAGTAAGTAGCAAAACAAACTTATTGGCAA  50
      |||||||||||||||||   ||||||||||||    | || ||||||| |
seq2  ATTCAGTTGCTTTCAAT---AAGTAAGTAGCA----ACACCTATTGGC-A  42

seq1  GGGATTGAGTTTAGCACCAGTAAAGGG-CACACATTGCAAGTTGAGCTGT  99
      |||| ||||||||||| |||||||||| |||||||||| |||||||||||
seq2  GGGA-TGAGTTTAGCA-CAGTAAAGGGCCACACATTGC-AGTTGAGCTGT  89

seq1  ACCGAATCCAAGGGAAGATCAATACACAGAGGGTGTCCCAGATTTCTTCT  149
      ||   || | |||||||||| |||||||||||||||||||||||||||||
seq2  AC--GATTCTAGGGAAGATC-ATACACAGAGGGTGTCCCAGATTTCTTCT  136

seq1  TTTACTACATTGTGAGGAAAAAAAATCTAGTCAGATGTTGTGCTTGAAGT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTACTACATTGTGAGGAAAAAAAATCTAGTCAGATG-TGTGCTTGAAGT  185

seq1  TTAATCCTGAGACATGGATAGCTATAGAAAAAAGAATGTATAGCTATATA  249
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAAT-CTGAGACATGGATAGCTATAG-AAAAAGAATGTATAGCTATATA  233

seq1  TGAGGATCACAAATATGAAGCCATTTTGGATTAGATAGCTCTACATACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCACAAATATGAAGCCATTTTGGATTAGATAGCTCTACATACAT  283

seq1  TGTGGAGGCCAGAGATGCCCTGAGACCCTGTCTATAAGAAAATAATAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGCCAGAGATGCCCTGAGACCCTGTCTATAAGAAAATAATAATG  333

seq1  CTGGTCAGAAAAACTGTTTTCATTATGTTTTGTGAAACTAAAAGTAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGAAAAACTGTTTTCATTATGTTTTGTGAAACTAAAAGTAGTTT  383

seq1  CATTAAATAGTCAACATCCATTTCAATCATGAACATAGTGTTTTCACTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATAGTCAACATCCATTTCAATCATGAACATAGTGTTTTCACTGT  433

seq1  ACACAGCTGTGAGAAACACATTTCTGGAAAGCATTACCCTATGAAAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGTGAGAAACACATTTCTGGAAAGCATTACCCTATGAAAAAAG  483

seq1  AAGAAGAAAAGCATATTCTGTGTACACTGACCTAATAAAATGAGGTAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAGCATATTCTGTGTACACTGACCTAATAAAATGAGGTAGAA  533

seq1  TTTGACATAGTGACACAACCAGTAGCTGTAACATCTATAATTGGGTCCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAGTGACACAACCAGTAGCTGTAACATCTATAATTGGGTCCTC  583

seq1  TATGGATTGCATATTAAAAAACTCAAGATTTTATTATTGTGTTTAATGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTGCATATTAAAAAACTCAAGATTTTATTATTGTGTTTAATGTT  633

seq1  TGATTGTACAACATAAAATGAAAGCATAAATTTTTGAGTAGAGAGTTGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTACAACATAAAATGAAAGCATAAATTTTTGAGTAGAGAGTTGAC  683

seq1  AGGTGAGTTACATTGTGTGCATTTTGATTTTTATGTCACCCATCTGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTTACATTGTGTGCATTTTGATTTTTATGTCACCCATCTGAGGG  733

seq1  TATATTTTCTTTTCAGGTATCATTCCCACAGAAATTTTATGCAAGTAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCTTTTCAGGTATCATTCCCACAGAAATTTTATGCAAGTAGTC  783

seq1  TGTTTCAGATAGTTGCTTGAAATTCAATGAAGTCAAATCAATAAAATACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGATAGTTGCTTGAAATTCAATGAAGTCAAATCAATAAAATACT  833

seq1  ATTGATTTTATAAACCATTTTCTAGGACACAGAAATGACTTTTCTTCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTATAAACCATTTTCTAGGACACAGAAATGACTTTTCTTCAGT  883

seq1  GTTAGGTGTTTAATGCATTTTTCCTGGTCATTTGTGGTAATTCATTGTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGTTTAATGCATTTTTCCTGGTCATTTGTGGTAATTCATTGTAC  933

seq1  TTATTATTAATTGGTAACTCACAATGTTCTAATTCTGTGTTGAAAATAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAATTGGTAACTCACAATGTTCTAATTCTGTGTTGAAAATAGA  983

seq1  ACTTGGCTGCTATGTGAAAGAATATTATCTCTGTGCTTTGACAATTCATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTGCTATGTGAAAGAATATTATCTCTGTGCTTTGACAATTCATG  1033

seq1  GGACATCATTTTTGCTGAGGGGAATATCTAAAAATAGAGTAGGGAGTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCATTTTTGCTGAGGGGAATATCTAAAAATAGAGTAGGGAGTTTG  1083

seq1  CGCTGTTAATGATAAAAAGTGAGCTTATTTCCAAATTGTCAAAACGATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTAATGATAAAAAGTGAGCTTATTTCCAAATTGTCAAAACGATTC  1133

seq1  TCCTCCGTGAATTC  1163
      ||||||||||||||
seq2  TCCTCCGTGAATTC  1147