BAC Information

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BAC

Clone NameB6Ng01-139P19
Chromosome15 (Build37)
Map Location 56,104,632 - 56,105,734
singlet/doubletsinglet
Overlap genenone
Upstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139P19.bB6Ng01-139P19.g
ACCDH938832DH938833
length1,1731,086
definitionDH938832|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P19, 5' end.DH938833|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaaaggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctggtggtggcctt
tctgtcatattgacagtgtcttttgccttacagaagctttgcaatttcat
gaagttccatttgtcgattctccatcttacagcacaagccattgctgtcc
tattcaggaattttccccctgtgcccatatctttgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggaactccttgat
cctcttagatttgaccttagtacaaggagagaggaatggattaattcaca
ttcttctgcatgttaaccaccagttctgcccgcaccattttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagaccaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactatacaagtaccatgcaggttttttttatcacaa
ttgctctgtaataaagctttaggtcaggcatggtgattccaccagaggtt
cttttatccttgagaagagtttttgctatcctagatttttagttattcaa
gatgaatttggagattgccctttctaattcattgaagaattgagttggaa
ttttgatggggattgcattgaatctgtagattgcttttggcaacatagcc
atttttactatattgatcctgcaaatccatgagcatgggaggtcttttcc
atcttctgagatcttctttatttctttctttagagacttgaagttcttat
catacagattctttcacttccttagttagagtcacgtcaagtatttatat
cattttgtgcctatttgaggtgttgtttcctaatttctttctggcctgtt
tattctttgtgtagagaaaggccattgactttgtcgagttatttatatct
gatacttcattgactgttttatcagctaggagtttcctgtgaaatttagg
tactatataccatcaacatctgcaagggatgtgatctcttctttccaatt
ggatacctcttgatttcctttgt
gaattcatttagctagagggcagatgacactgtttggaaggacctataac
tgaatcttgctagactaaacagtacagggctagaacaagcctggacgata
tatgctaggaatgctgatatactacagttatggtgtgtcattctttgaga
agacaggtaattgtttctcaaataacaatcattcatctaccacctgcaga
aatggtataaatttttatttaagtgaattcatcatttcattgtcattcat
tgatttaaagctattttcattatgatagaagttaactaaaaataagatca
agtaaatctttgatattaaattgaatgtttttattaaacttgttctattt
acaattacatgcattcatgtgtgcacacacacaaacacactcacacacag
agacacccacatacagacacacggttaccctcatcctgccaatcctattg
cctccatccctttaagtatgtttgttgttgttttcgtgttttgtgatcta
ctgagattaactgggtctatctgtgtagacttatatcactaaatcatgaa
aaataaattacagaagagcatgtaatacataaagctttatctcatttttt
tctattatttctaacagacaaaaaatattatgtatagttattatgtagaa
caagttattttgatgtgtatacattgtgaagtggttaagtgaggataatt
caatatttttagttcatatactaacttttggtggtaaaaatacttcacat
ttaacatattagtagtttgaggctggggtgggtatgtatcagtgggatag
catttctgtccacacatgaaggccagtgttgagatttcttcctttcacac
agacctggggtgcagtggttgtgcgtctgtaattccagataactgcagtt
agatggaaacagagatgagatcctaggagactcatagccagctaacctgg
cattcccacagaggacaaccaaggctgccagaaacagctagagctaaggc
acacacatgtgtctctgtcctgtactcacgtagagcagtgctttactgct
tctactcccataccaagccctaccgctggacattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56104632_56105734
seq2: B6Ng01-139P19.g_69_1154 (reverse)

seq1  TGAATGTTCATGCGTAGGTGCTTGTGTATGTGAGTAGAAGCAGATAAAAG  50
      ||||||| ||   ||||| ||||| ||||| |||||||||||| ||||  
seq2  TGAATGTCCAGCGGTAGG-GCTTG-GTATGGGAGTAGAAGCAG-TAAA--  45

seq1  CCACTGCTCTCACGTGGAGTACAGGGGACAGAGAACCACATGTGTGTGCC  100
       ||||||||| |||| |||||||  |||||||||  ||||||||||||||
seq2  GCACTGCTCT-ACGT-GAGTACA--GGACAGAGA--CACATGTGTGTGCC  89

seq1  TTTGCCTTCTAGCTTGTTTTCTGGCAGCCTTTGGTTGTCTTCTGTTGGGA  150
      || ||  |||||||   |||||||||||| ||||||||| |||| |||||
seq2  TTAGC--TCTAGCT--GTTTCTGGCAGCC-TTGGTTGTCCTCTG-TGGGA  133

seq1  ATGCCAGGTTAGCTGGCCTATGAGTCTCCTGGGATTCTCATTCTCTGTTT  200
      |||||||||||||||| ||||||||||||| ||| ||||| |||||||||
seq2  ATGCCAGGTTAGCTGG-CTATGAGTCTCCTAGGA-TCTCA-TCTCTGTTT  180

seq1  CCATCTAACTGCAGTTATCTGGAATTACAGACGCAC-ACCACTGCA-CCC  248
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CCATCTAACTGCAGTTATCTGGAATTACAGACGCACAACCACTGCACCCC  230

seq1  AGGTCTGTGTGAAAGGAAGAAATCTCAACACTGGCCTTCATGTGTGGACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTGTGAAAGGAAGAAATCTCAACACTGGCCTTCATGTGTGGACA  280

seq1  GAAATGCTAT-CCACTGATACATACCCACCCCAGCCTCAAACTACTAATA  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTATCCCACTGATACATACCCACCCCAGCCTCAAACTACTAATA  330

seq1  TGTTAAATGTGAAGTATTTTTACCACCAAAAGTTAGTATATGAACTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATGTGAAGTATTTTTACCACCAAAAGTTAGTATATGAACTAAAA  380

seq1  ATATTGAATTATCCTCACTTAACCACTTCACAATGTATACACATCAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATTATCCTCACTTAACCACTTCACAATGTATACACATCAAAAT  430

seq1  AACTTGTTCTACATAATAACTATACATAATATTTTTTGTCTGTTAGAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTCTACATAATAACTATACATAATATTTTTTGTCTGTTAGAAAT  480

seq1  AATAGAAAAAAATGAGATAAAGCTTTATGTATTACATGCTCTTCTGTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAAAATGAGATAAAGCTTTATGTATTACATGCTCTTCTGTAAT  530

seq1  TTATTTTTCATGATTTAGTGATATAAGTCTACACAGATAGACCCAGTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCATGATTTAGTGATATAAGTCTACACAGATAGACCCAGTTAA  580

seq1  TCTCAGTAGATCACAAAACACGAAAACAACAACAAACATACTTAAAGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAGATCACAAAACACGAAAACAACAACAAACATACTTAAAGGGA  630

seq1  TGGAGGCAATAGGATTGGCAGGATGAGGGTAACCGTGTGTCTGTATGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAATAGGATTGGCAGGATGAGGGTAACCGTGTGTCTGTATGTGG  680

seq1  GTGTCTCTGTGTGTGAGTGTGTTTGTGTGTGTGCACACATGAATGCATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGTGTGTGAGTGTGTTTGTGTGTGTGCACACATGAATGCATGT  730

seq1  AATTGTAAATAGAACAAGTTTAATAAAAACATTCAATTTAATATCAAAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAATAGAACAAGTTTAATAAAAACATTCAATTTAATATCAAAGA  780

seq1  TTTACTTGATCTTATTTTTAGTTAACTTCTATCATAATGAAAATAGCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGATCTTATTTTTAGTTAACTTCTATCATAATGAAAATAGCTTT  830

seq1  AAATCAATGAATGACAATGAAATGATGAATTCACTTAAATAAAAATTTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATGAATGACAATGAAATGATGAATTCACTTAAATAAAAATTTAT  880

seq1  ACCATTTCTGCAGGTGGTAGATGAATGATTGTTATTTGAGAAACAATTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTGCAGGTGGTAGATGAATGATTGTTATTTGAGAAACAATTAC  930

seq1  CTGTCTTCTCAAAGAATGACACACCATAACTGTAGTATATCAGCATTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCAAAGAATGACACACCATAACTGTAGTATATCAGCATTCCT  980

seq1  AGCATATATCGTCCAGGCTTGTTCTAGCCCTGTACTGTTTAGTCTAGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATCGTCCAGGCTTGTTCTAGCCCTGTACTGTTTAGTCTAGCAA  1030

seq1  GATTCAGTTATAGGTCCTTCCAAACAGTGTCATCTGCCCTCTAGCTAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTTATAGGTCCTTCCAAACAGTGTCATCTGCCCTCTAGCTAAAT  1080

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1086