BAC Information

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BAC

Clone NameB6Ng01-140A18
Chromosome15 (Build37)
Map Location 89,852,411 - 90,049,290
singlet/doubletdoublet
Overlap genenone
Upstream geneMov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
Downstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140A18.bB6Ng01-140A18.g
ACCDH938877DH938878
length1,0791,098
definitionDH938877|Mus musculus domesticus DNA, BAC clone: B6Ng01-140A18, 5' end.DH938878|Mus musculus domesticus DNA, BAC clone: B6Ng01-140A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,852,411 - 89,853,497)(90,048,175 - 90,049,290)
sequence
gaattcctgggaattgctctagaattgtccagtctcataaaattttaact
ggtgttcctgcaagataacagccacaatgctaagcatgtgttctgcttct
gtaaacaagcttgcttatgcaagataaccccagacatcagcaagacatct
gtttgctaggttgagccctgtgcttgcacattggcacataaccttatggg
ttttgcctttagaaacactggtctaacatggcttaggactgcatttgaga
ttcctaactcttgggtgcagtactggtgccagtctaattaaagccttttg
ttgttgttattgttgttgttaaatgcatttgtggtcagactggttaatct
cggaatgatcctagacttatagtagccacatgaattatataagaatttta
aaggtttgacttacttgttttacatttcttcataatttaccaatgagtag
aagcattttctgacctatttgaagactgttacatattaaagccattcact
attctgaactgtttagtctacatgttctaatttataagcttattgaaata
aattcttttcatgccatttttacatttattgttcaattttgagtgtttgg
tctttagaactatgccctgctgtgtcccatattcatttgaaaaaactgtc
cctaaaaattattagcatttataagttactgctattgtgatttttgtctg
ctaaggagaaattttactttttcttttaagtcatgcaaaatgttatacaa
tggccagtaagaacattgcagcctatccactggaaatcatatatgctttt
aaatagactttaattttttaaaataacatttaaaaagcataaatacacta
gatataagatcccaatgaaagctactgcttaagacaaaggtacaatttga
attaagttattaattaaagtgtatagataatgatatgcctacatatgtaa
cactatataaatattatgatatagtctagggtgtattatagttgattgca
ccattgtcatatcactgtattcatatcatagatttctgacattttaattt
tttatttattatctgtaaatattccagtg
gaattccttcattattaaatgtcaaactatttgaggcttgtaacttagat
tccgatatttgatgctatgaaaaaactgagcaatttttgctgaatcctga
agctagaaattgttagcaagaagtaaacctttggttgaaaaacagttgag
gggttttttttgcatttattattgtcatatgaatttatacattcttaata
attaagatagtattagtttagtaaacggagtgaaactctatttctgaata
agggttctcccaagtcctgtacctgtaagtgaagagtgtgtgtaagggtc
ctcttacactgaagcattgtccaaagccatcctgcctctagccacacttt
cccccttgtcgatgaaccaaactttgactaattgatagtggtgctgctga
tttacttaggtcacaattggttctagcaacaatgagcactgtaacctgca
tcaatgtcctacacagtaggctccaaagtgcaattttaagacttggcatc
aatctttggtcgatgtgttatcactgggaaataagcaaacaaagttttgc
atgaagaaaacatgccatttcacttcaaaatggtgcggggcttcccacag
agaagatctctcagacacagtctatgagtctatgagctgattggaagcct
ttattccagccagctgctactatacctgggtatttgggagccaagtgcag
gcctgaacctttctcaggacccatacatatttaagaaggaaaaaacacat
attagctggatggtgcacaaggttctcttcccacagctgcagactaagca
gatagtcacaaaagccaaaatgtgcaattagcaaaacagcgaggtcaggc
caaccattgcaaagaacctgcatccttgagttgcatttcttcccggaatt
gttttctcagtcccacttctgggtactggcactttactcactcagataag
ttcatcccaggtacaacacatgttaccatggtcagcttaattcctgtcac
aaaatatgttagcaggattttactgaagatatcgagatatggtgagggga
aaggtggtcctggtttcgagcattccagtcttagctagcatctcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89852411_89853497
seq2: B6Ng01-140A18.b_45_1123

seq1  GAATTCCTGGGAATTGCTCTAGAATTGTCCAGTCTCATAAAATTTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAATTGCTCTAGAATTGTCCAGTCTCATAAAATTTTAACT  50

seq1  GGTGTTCCTGCAAGATAACAGCCACAATGCTAAGCATGTGTTCTGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCCTGCAAGATAACAGCCACAATGCTAAGCATGTGTTCTGCTTCT  100

seq1  GTAAACAAGCTTGCTTATGCAAGATAACCCCAGACATCAGCAAGACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGCTTGCTTATGCAAGATAACCCCAGACATCAGCAAGACATCT  150

seq1  GTTTGCTAGGTTGAGCCCTGTGCTTGCACATTGGCACATAACCTTATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTAGGTTGAGCCCTGTGCTTGCACATTGGCACATAACCTTATGGG  200

seq1  TTTTGCCTTTAGAAACACTGGTCTAACATGGCTTAGGACTGCATTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTTAGAAACACTGGTCTAACATGGCTTAGGACTGCATTTGAGA  250

seq1  TTCCTAACTCTTGGGTGCAGTACTGGTGCCAGTCTAATTAAAGCCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTCTTGGGTGCAGTACTGGTGCCAGTCTAATTAAAGCCTTTTG  300

seq1  TTGTTGTTATTGTTGTTGTTAAATGCATTTGTGGTCAGACTGGTTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTATTGTTGTTGTTAAATGCATTTGTGGTCAGACTGGTTAATCT  350

seq1  CGGAATGATCCTAGACTTATAGTAGCCACATGAATTATATAAGAATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATGATCCTAGACTTATAGTAGCCACATGAATTATATAAGAATTTTA  400

seq1  AAGGTTTGACTTACTTGTTTTACATTTCTTCATAATTTACCAATGAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGACTTACTTGTTTTACATTTCTTCATAATTTACCAATGAGTAG  450

seq1  AAGCATTTTCTGACCTATTTGAAGACTGTTACATATTAAAGCCATTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCTGACCTATTTGAAGACTGTTACATATTAAAGCCATTCACT  500

seq1  ATTCTGAACTGTTTAGTCTACATGTTCTAATTTATAAGCTTATTGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAACTGTTTAGTCTACATGTTCTAATTTATAAGCTTATTGAAATA  550

seq1  AATTCTTTTCATGCCATTTTTACATTTATTGTTCAATTTTGAGTGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTCATGCCATTTTTACATTTATTGTTCAATTTTGAGTGTTTGG  600

seq1  TCTTTAGAACTATGCCCTGCTGTGTCCCATATTCATTTGAAAAAACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAACTATGCCCTGCTGTGTCCCATATTCATTTGAAAAAACTGTC  650

seq1  CCTAAAAATTATTAGCATTTATAAGTTACTGCTATTGTGATTTTTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATTATTAGCATTTATAAGTTACTGCTATTGTGATTTTTGTCTG  700

seq1  CTAAGGAGAAATTTTACTTTTTCTTTTAAGTCATGCAAAATGTTATACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGAAATTTTACTTTTTCTTTTAAGTCATGCAAAATGTTATACAA  750

seq1  TGGCCAGTAAGAACATTGCAGCCTATCCACTGGAAATCATATATGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTAAGAACATTGCAGCCTATCCACTGGAAATCATATATGCTTTT  800

seq1  AAATAGACTTTAATTTTTTAAAATAACATTTAAAAAGCATAAATACACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACTTTAATTTTTTAAAATAACATTTAAAAAGCATAAATACACTA  850

seq1  GATATAAGATCCCAATGAAAGCTACTGCTTAAGACAAAGGTACAATTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATATAAGATCCCAATGAAAGCTACTGCTTAAGACAAAGGTACAATTTG-  899

seq1  AATTAAGTTATTAATTAAAGTGTATAGATAATGATATGCCTACATATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTTATTAATTAAAGTGTATAGATAATGATATGCCTACATATGTA  949

seq1  ACACTATATAAATAATTATGATATAGTCTAGGGTGTATTATAGGTTGATT  1000
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ACACTATATAAAT-ATTATGATATAGTCTAGGGTGTATTATA-GTTGATT  997

seq1  GCACCATTGTCATTATCACTGTATTCATATTCATAGATTTCTGACATTTT  1050
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GCACCATTGTCA-TATCACTGTATTCATA-TCATAGATTTCTGACATTTT  1045

seq1  AAATTTTTTATTTATTTACTGTAAAATAATTCCAGTG  1087
       |||||||||||||||  |||||||   |||||||||
seq2  -AATTTTTTATTTATTATCTGTAAA--TATTCCAGTG  1079

seq1: chr15_90048175_90049290
seq2: B6Ng01-140A18.g_67_1164 (reverse)

seq1  GTTTGAGATGCTTAGGGCTAGAACTGGAATTGCTCCAGAAAACCAGGACC  50
      ||||||||||||    ||||  ||||||| |||||    |||||||||||
seq2  GTTTGAGATGCT---AGCTAAGACTGGAA-TGCTC---GAAACCAGGACC  43

seq1  ACCTTTCCCCTCACCATATCTCCGATATCTTCAGTAAAATCCTTGCTAAC  100
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  ACCTTTCCCCTCACCATATCT-CGATATCTTCAGTAAAATCC-TGCTAAC  91

seq1  ATATTTTGTGACAAGGGATGTAAGCTGACCATGGTAACATTGTGTTGGTA  150
      |||||||||||||  |||  ||||||||||||||||||| |||||| |||
seq2  ATATTTTGTGACA--GGAATTAAGCTGACCATGGTAACA-TGTGTT-GTA  137

seq1  CCTGGGATGAACTTTATCTGAGTGAGTAAAGTGCCAGTACCCAGAAGTGG  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATGAAC-TTATCTGAGTGAGTAAAGTGCCAGTACCCAGAAGTGG  186

seq1  GGACCTGAGAAAAACAATTCCGGGAAGAAATGCAACTCAAGGATGCAGGT  250
      |   ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  G--ACTGAG-AAAACAATTCCGGGAAGAAATGCAACTCAAGGATGCAGGT  233

seq1  TCTTTGCAATGGTTGGCCTGACCTCGCTGTTTTTGCTAATTGCACATTTT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTTGCAATGGTTGGCCTGACCTCGCTG-TTTTGCTAATTGCACATTTT  282

seq1  GGCTTTTGTGACTATCTGCTTAGTCTGCAGCTGTGGGAAGGGAACCTTGT  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTTTTGTGACTATCTGCTTAGTCTGCAGCTGTGGGAAGAGAACCTTGT  332

seq1  GCACCATCCAGCTAATATGTGTTTTTTCCTTCTTAAATATGTATGGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCCAGCTAATATGTGTTTTTTCCTTCTTAAATATGTATGGGTCC  382

seq1  TGAGAAAGGTTCAGGCCTGCACTTGGCTCCCAAATACCCAGGTATAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGTTCAGGCCTGCACTTGGCTCCCAAATACCCAGGTATAGTAG  432

seq1  CAGCTGGCTGGAATAAAGGCTTCCAATCAGCTCATAGACTCATAGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTGGAATAAAGGCTTCCAATCAGCTCATAGACTCATAGACTGT  482

seq1  GTCTGAGAGATCTTCTCTGTGGGAAGCCCCGCACCATTTTGAAGTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAGATCTTCTCTGTGGGAAGCCCCGCACCATTTTGAAGTGAAAT  532

seq1  GGCATGTTTTCTTCATGCAAAACTTTGTTTGCTTATTTCCCAGTGATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTTTCTTCATGCAAAACTTTGTTTGCTTATTTCCCAGTGATAAC  582

seq1  ACATCGACCAAAGATTGATGCCAAGTCTTAAAATTGCACTTTGGAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGACCAAAGATTGATGCCAAGTCTTAAAATTGCACTTTGGAGCCTA  632

seq1  CTGTGTAGGACATTGATGCAGGTTACAGTGCTCATTGTTGCTAGAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGGACATTGATGCAGGTTACAGTGCTCATTGTTGCTAGAACCAA  682

seq1  TTGTGACCTAAGTAAATCAGCAGCACCACTATCAATTAGTCAAAGTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCTAAGTAAATCAGCAGCACCACTATCAATTAGTCAAAGTTTGG  732

seq1  TTCATCGACAAGGGGGAAAGTGTGGCTAGAGGCAGGATGGCTTTGGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCGACAAGGGGGAAAGTGTGGCTAGAGGCAGGATGGCTTTGGACAA  782

seq1  TGCTTCAGTGTAAGAGGACCCTTACACACACTCTTCACTTACAGGTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGTGTAAGAGGACCCTTACACACACTCTTCACTTACAGGTACAG  832

seq1  GACTTGGGAGAACCCTTATTCAGAAATAGAGTTTCACTCCGTTTACTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGGAGAACCCTTATTCAGAAATAGAGTTTCACTCCGTTTACTAAA  882

seq1  CTAATACTATCTTAATTATTAAGAATGTATAAATTCATATGACAATAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTATCTTAATTATTAAGAATGTATAAATTCATATGACAATAATA  932

seq1  AATGCAAAAAAAACCCCTCAACTGTTTTTCAACCAAAGGTTTACTTCTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAAAAAACCCCTCAACTGTTTTTCAACCAAAGGTTTACTTCTTG  982

seq1  CTAACAATTTCTAGCTTCAGGATTCAGCAAAAATTGCTCAGTTTTTTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATTTCTAGCTTCAGGATTCAGCAAAAATTGCTCAGTTTTTTCAT  1032

seq1  AGCATCAAATATCGGAATCTAAGTTACAAGCCTCAAATAGTTTGACATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAATATCGGAATCTAAGTTACAAGCCTCAAATAGTTTGACATTT  1082

seq1  AATAATGAAGGAATTC  1116
      ||||||||||||||||
seq2  AATAATGAAGGAATTC  1098