BAC Information

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BAC

Clone NameB6Ng01-140H14
Chromosome15 (Build37)
Map Location 28,162,082 - 28,310,333
singlet/doubletdoublet
Overlap geneDnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140H14.bB6Ng01-140H14.g
ACCDH939197DH939198
length1,053829
definitionDH939197|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H14, 5' end.DH939198|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,162,082 - 28,163,127)(28,309,515 - 28,310,333)
sequence
gaattccagtgtgggtgtgttaaccatggcagaccctggtagtgtgaggt
acctccacacgcttccatgtttatctctcttgagcactctttgctgctct
atttaatttagggatgccatgttagatcttgtaagtgacaactagcaatg
gcagttctgttggctctgaacatgctgagatatgaatcatatctctattg
agggtaaaaaacaaactgaatccaagcactgagttctgagatgcacacaa
gttttaagaaacaattttgtttaagagacaatttcaccagaagggaagta
ttcatagaaaaggagagggccatattgtgatttgacataccacgcatgct
tatttgtgggttggtgccctgtaaactctacccaagcatttatattgagt
ttgctaaccacgaagccatggtaatctttttctctcattagtttaaagaa
agaattcagtgatagtaagaattacccacttccaccacccatgctgattt
ccttcaggttgactctttctctgtggtgttataacttggtgaatatttct
aattattttattagtttcatgatatattctatttaatatcaccccccatt
tgaccttagaatcttttgtagaaaagacataaagaaaaaagacatagaga
aaggaaggtattgttattgttatcattattagtcattgccctttcaataa
gcactttgagtgatcaaggtaggaaagatgttaagattctgttgagctcc
aactagacccaaatttgaccaaaaagtgtatattggcattttaaaacatt
tttcttactattgtaatcttaattttaattaggtgaaccttcaaaaatgt
gacatcattgaactaaaattttctgaagaactcacggactacttggctct
agctagtaaatcttgagactgtggaaaaagtagagtgctgcatgagagtg
tggatcaaacagaatggaggcagtaacttcaatcatcctttgggtcattc
agaagccacattcatgggagtcactgattggagaattctattctgggtat
tct
gaattcttctcaactaaacttcccaaactggcttctgaaactctatttga
cttctctgaatcgcctctccatatatctccatgtttactgttcatatgct
aattcagagagagagagagagagagagagagagagagagagaattcatct
gaggttccctctcttcattaacagtgactatctatataattctgtatcct
ccgaaccagaattaccaagaaagctccagtttgctaaacatctcatggat
ttctaccatccatctttcccttctctctgccatgcctcatggtactatca
tgtcttgcttagactcctcagatatatttatgacagtttttttctctgtc
tatttactagacatgcaaatcactcacatacacacacatacacacactca
tatacacacactcgtacacatacttgcacatactcacacacactcacata
cattcacacatacacacacacacactcacacacatatactcacacacaca
cacttgtgcacacacacacacacacacacacacacacacacactttacca
gtaacacatcagtgttttcctattactctcctgtgacatatcaattcctt
actataccttcaaattcccccatgacttatacattcccattgtcaacata
ttcaacactcggccatatttgattctcccagggatcagtaggaacttgcc
atgatgtttcactttcacagtgccaatttttgttgttgggtgtttgttgt
tttgttttgtttttgtgtttttgttttttctttttgtttgggtttgattt
tttggtttttgggtttttttttgcttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28162082_28163127
seq2: B6Ng01-140H14.b_44_1096

seq1  GAATTCCAGTGTGGGTGTGTTAACCATGGCAGACCCTGGTAGTGTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTGGGTGTGTTAACCATGGCAGACCCTGGTAGTGTGAGGT  50

seq1  ACCTCCACACGCTTCCATGTTTATCTCTCTTGAGCACTCTTTGCTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACACGCTTCCATGTTTATCTCTCTTGAGCACTCTTTGCTGCTCT  100

seq1  ATTTAATTTAGGGATGCCATGTTAGATCTTGTAAGTGACAACTAGCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTAGGGATGCCATGTTAGATCTTGTAAGTGACAACTAGCAATG  150

seq1  GCAGTTCTGTTGGCTCTGAACATGCTGAGATATGAATCATATCTCTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTGTTGGCTCTGAACATGCTGAGATATGAATCATATCTCTATTG  200

seq1  AGGGTAAAAAACAAACTGAATCCAAGCACTGAGTTCTGAGATGCACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAAAACAAACTGAATCCAAGCACTGAGTTCTGAGATGCACACAA  250

seq1  GTTTTAAGAAACAATTTTGTTTAAGAGACAATTTCACCAGAAGGGAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGAAACAATTTTGTTTAAGAGACAATTTCACCAGAAGGGAAGTA  300

seq1  TTCATAGAAAAGGAGAGGGCCATATTGTGATTTGACATACCACGCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAAAAGGAGAGGGCCATATTGTGATTTGACATACCACGCATGCT  350

seq1  TATTTGTGGGTTGGTGCCCTGTAAACTCTACCCAAGCATTTATATTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGGGTTGGTGCCCTGTAAACTCTACCCAAGCATTTATATTGAGT  400

seq1  TTGCTAACCACGAAGCCATGGTAATCTTTTTCTCTCATTAGTTTAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACCACGAAGCCATGGTAATCTTTTTCTCTCATTAGTTTAAAGAA  450

seq1  AGAATTCAGTGATAGTAAGAATTACCCACTTCCACCACCCATGCTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGTGATAGTAAGAATTACCCACTTCCACCACCCATGCTGATTT  500

seq1  CCTTCAGGTTGACTCTTTCTCTGTGGTGTTATAACTTGGTGAATATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGTTGACTCTTTCTCTGTGGTGTTATAACTTGGTGAATATTTCT  550

seq1  AATTATTTTATTAGTTTCATGATATATTCTATTTAATATCACCCCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATTAGTTTCATGATATATTCTATTTAATATCACCCCCCATT  600

seq1  TGACCTTAGAATCTTTTGTAGAAAAGACATAAAGAAAAAAGACATAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTAGAATCTTTTGTAGAAAAGACATAAAGAAAAAAGACATAGAGA  650

seq1  AAGGAAGGTATTGTTATTGTTATCATTATTAGTCATTGCCCTTTCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTATTGTTATTGTTATCATTATTAGTCATTGCCCTTTCAATAA  700

seq1  GCACTTTGAGTGATCAAGGTAGGAAAGATGTTAAGATTCTGTTGAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGAGTGATCAAGGTAGGAAAGATGTTAAGATTCTGTTGAGCTCC  750

seq1  AACTAGACCCAAA-TTGACCAAAAAGTGTATATTGGCATTTTAAAACA-T  798
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  AACTAGACCCAAATTTGACCAAAAAGTGTATATTGGCATTTTAAAACATT  800

seq1  TTTCTTACTATTGTAATCTTAATTTTAATTAGGTGAACCTTCAAAAATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACTATTGTAATCTTAATTTTAATTAGGTGAACCTTCAAAAATGT  850

seq1  GACATCATTGAACTAAAA-TCTCTGAAGGAACCCACGGACTACTTGGCTC  897
      |||||||||||||||||| | |||||| |||| |||||||||||||||||
seq2  GACATCATTGAACTAAAATTTTCTGAA-GAACTCACGGACTACTTGGCTC  899

seq1  TAGCTAGT-AATCCCGAGACTGTGGAAAAAGTAGAGTGCTGCATGAGAGT  946
      |||||||| ||||  |||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTAAATCTTGAGACTGTGGAAAAAGTAGAGTGCTGCATGAGAGT  949

seq1  GTGGATCAAACAG-ATGGAGCAGGTAACTTCCAGCATCCTCT-GGTCATT  994
      ||||||||||||| ||||||   |||||||| | |||||| | |||||||
seq2  GTGGATCAAACAGAATGGAGGCAGTAACTTCAATCATCCTTTGGGTCATT  999

seq1  CAGAAGCCACA-TCACCGGAGTCACTGATGGAAGAATTCTATCCT-GGTA  1042
      ||||||||||| |||  |||||||||||| | |||||||||| || ||||
seq2  CAGAAGCCACATTCATGGGAGTCACTGATTGGAGAATTCTATTCTGGGTA  1049

seq1  TTCT  1046
      ||||
seq2  TTCT  1053

seq1: chr15_28309515_28310333
seq2: B6Ng01-140H14.g_69_897 (reverse)

seq1  CAAAA-CAAAAAAAAACCCAAAAACC-AAAAATCAAA-CCAAACAAAAAG  47
      ||||| |||||||||||||||||||| |||||||||| ||||||||||||
seq2  CAAAAGCAAAAAAAAACCCAAAAACCAAAAAATCAAACCCAAACAAAAAG  50

seq1  AAAAAAC-AAAACAC-AAAACAAAACAAAACAAC-AACA-CCAACAAC-A  92
      ||||||| ||||||| |||||||||||||||||| |||| |||||||| |
seq2  AAAAAACAAAAACACAAAAACAAAACAAAACAACAAACACCCAACAACAA  100

seq1  AAATTGGCACTGTG-AAGTG-AACATCATGGCAAGTTCCTACTGATCCCT  140
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  AAATTGGCACTGTGAAAGTGAAACATCATGGCAAGTTCCTACTGATCCCT  150

seq1  GGGAGAATCAAATATGGCCGAGTGTTGAATATGTTGACAATGGGAATGTA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATCAAATATGGCCGAGTGTTGAATATGTTGACAATGGGAATGTA  200

seq1  TAAGTCATGGGGGAATTTGAAGGTATAGTAAGGAATTGATATGTCACAGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATGGGGGAATTTGAAGGTATAGTAAGGAATTGATATGTCACAGG  250

seq1  AGAGTAATAGGAAAACACTGATGTGTTACTGGTAAAGTGTGTGTGTGTGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATAGGAAAACACTGATGTGTTACTGGTAAAGTGTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGCACAAGTGTGTGTGTGTGAGTATATGTGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGCACAAGTGTGTGTGTGTGAGTATATGTGT  350

seq1  GTGAGTGTGTGTGTGTGTATGTGTGAATGTATGTGAGTGTGTGTGAGTAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTGTGTGTGTATGTGTGAATGTATGTGAGTGTGTGTGAGTAT  400

seq1  GTGCAAGTATGTGTACGAGTGTGTGTATATGAGTGTGTGTATGTGTGTGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTATGTGTACGAGTGTGTGTATATGAGTGTGTGTATGTGTGTGT  450

seq1  ATGTGAGTGATTTGCATGTCTAGTAAATAGACAGAGAAAAAAACTGTCAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTGATTTGCATGTCTAGTAAATAGACAGAGAAAAAAACTGTCAT  500

seq1  AAATATATCTGAGGAGTCTAAGCAAGACATGATAGTACCATGAGGCATGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATCTGAGGAGTCTAAGCAAGACATGATAGTACCATGAGGCATGG  550

seq1  CAGAGAGAAGGGAAAGATGGATGGTAGAAATCCATGAGATGTTTAGCAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGGGAAAGATGGATGGTAGAAATCCATGAGATGTTTAGCAAA  600

seq1  CTGGAGCTTTCTTGGTAATTCTGGTTCGGAGGATACAGAATTATATAGAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTTTCTTGGTAATTCTGGTTCGGAGGATACAGAATTATATAGAT  650

seq1  AGTCACTGTTAATGAAGAGAGGGAACCTCAGATGAATTCTCTCTCTCTCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTTAATGAAGAGAGGGAACCTCAGATGAATTCTCTCTCTCTCT  700

seq1  CTCTCTCTCTCTCTCTCTCTCTCTGAATTAGCATATGAACAGTAAACATG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTGAATTAGCATATGAACAGTAAACATG  750

seq1  GAGATATATGGAGAGGCGATTCAGAGAAGTCAAATAGAGTTTCAGAAGCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATATGGAGAGGCGATTCAGAGAAGTCAAATAGAGTTTCAGAAGCC  800

seq1  AGTTTGGGAAGTTTAGTTGAGAAGAATTC  819
      |||||||||||||||||||||||||||||
seq2  AGTTTGGGAAGTTTAGTTGAGAAGAATTC  829