BAC Information

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BAC

Clone NameB6Ng01-141H23
Chromosome15 (Build37)
Map Location 47,746,208 - 47,757,427
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H23.bB6Ng01-141H23.g
ACCDH939942DH939943
length502471
definitionDH939942|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H23, 5' end.DH939943|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,756,926 - 47,757,427)(47,746,208 - 47,746,684)
sequence
gaattgtagtcagagataagtgaggaggtccttgttggagtgagttgttg
taagagaaacatgatatacaaacatgatattcctcaggtgagaattcttt
gttcagctctgagccccgtttttaatgggattattagattttctggagtc
caccttcttgagttctttatatatattggatgttagtccctatctgattt
aggataggtaaagatcctttcccaatctgttggtggtctttttgtcttat
tgacgatgtcttttgccttgcagaagctttgcaactttatggggtcccat
ttgtcaatgcttgatttttttcagcacaagccattgttgttctattcagg
attttttcccctgtacccatatcttcgaggcagaactttatccttaactg
ctactccagagaaaccattctactaaaagaaaggtcagggtaaagaaaca
ctttttctttttaaaatgtatttggtatgtggtgtgtgtgtgtgtgtgtg
tg
tttgtcctgtaggctacctggtacatgttctgggtgctaaattttaggaa
gtatggaactaagattcctcagtgcattaaactagggaacttgcagtaat
attacaggatcaaataagtctatgctttaaaaataaactttagaaatctt
tgcctttgggttttctacgttatctcattattgacttcattatcagacct
tagggtggatttgaatgttcaaaggttttaactaaagaggcaaaaacaac
ccagcaagccattattttgtagaaataagatcttaaaacaatgttttctg
tggtcagtataagttgaagacaaggtgaaagataatgaattgctttatat
tgaaatgttttcacatttaagaattaaattttaaaaatccacattaatga
agaactttaactgtgaagaggaagaggaggagaagaagaagaaggagaag
gagaaggggaaggggaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47756926_47757427
seq2: B6Ng01-141H23.b_46_547 (reverse)

seq1  CACACACACACACACACACACCACATACCAAATACATTTTAAAAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACCACATACCAAATACATTTTAAAAAGAAAA  50

seq1  AGTGTTTCTTTACCCTGACCTTTCTTTTAGTAGAATGGTTTCTCTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTTTACCCTGACCTTTCTTTTAGTAGAATGGTTTCTCTGGAGT  100

seq1  AGCAGTTAAGGATAAAGTTCTGCCTCGAAGATATGGGTACAGGGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAGGATAAAGTTCTGCCTCGAAGATATGGGTACAGGGGAAAAA  150

seq1  ATCCTGAATAGAACAACAATGGCTTGTGCTGAAAAAAATCAAGCATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATAGAACAACAATGGCTTGTGCTGAAAAAAATCAAGCATTGAC  200

seq1  AAATGGGACCCCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACATCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACCCCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACATCGT  250

seq1  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  300

seq1  CTAAATCAGATAGGGACTAACATCCAATATATATAAAGAACTCAAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGATAGGGACTAACATCCAATATATATAAAGAACTCAAGAAGG  350

seq1  TGGACTCCAGAAAATCTAATAATCCCATTAAAAACGGGGCTCAGAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCAGAAAATCTAATAATCCCATTAAAAACGGGGCTCAGAGCTGA  400

seq1  ACAAAGAATTCTCACCTGAGGAATATCATGTTTGTATATCATGTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATTCTCACCTGAGGAATATCATGTTTGTATATCATGTTTCTCT  450

seq1  TACAACAACTCACTCCAACAAGGACCTCCTCACTTATCTCTGACTACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAACTCACTCCAACAAGGACCTCCTCACTTATCTCTGACTACAAT  500

seq1  TC  502
      ||
seq2  TC  502

seq1: chr15_47746208_47746684
seq2: B6Ng01-141H23.g_66_542

seq1  GAATTCTTTGTCCTGTAGGCTACCTGGTACATGTTCTGGGTGCTAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCTGTAGGCTACCTGGTACATGTTCTGGGTGCTAAATTT  50

seq1  TAGGAAGTATGGAACTAAGATTCCTCAGTGCATTAAACTAGGGAACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTATGGAACTAAGATTCCTCAGTGCATTAAACTAGGGAACTTGC  100

seq1  AGTAATATTACAGGATCAAATAAGTCTATGCTTTAAAAATAAACTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTACAGGATCAAATAAGTCTATGCTTTAAAAATAAACTTTAGA  150

seq1  AATCTTTGCCTTTGGGTTTTCTACGTTATCTCATTATTGACTTCATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGCCTTTGGGTTTTCTACGTTATCTCATTATTGACTTCATTATC  200

seq1  AGACCTTAGGGTGGATTTGAATGTTCAAAGGTTTTAACTAAAGAGGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTAGGGTGGATTTGAATGTTCAAAGGTTTTAACTAAAGAGGCAAA  250

seq1  AACAACCCAGCAAGCCATTATTTTGTAGAAATAAGATCTTAAAACAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCCAGCAAGCCATTATTTTGTAGAAATAAGATCTTAAAACAATGT  300

seq1  TTTCTGTGGTCAGTATAAGTTGAAGACAAGGTGAAAGATAATGAATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGTCAGTATAAGTTGAAGACAAGGTGAAAGATAATGAATTGCT  350

seq1  TTATATTGAAATGTTTTCACATTTAAGAATTAAATTTTAAAAATCCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGAAATGTTTTCACATTTAAGAATTAAATTTTAAAAATCCACAT  400

seq1  TAATGAAGAACTTTAACTGTGAAGAGGAAGAGGAGGAGAAGAAGAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGAACTTTAACTGTGAAGAGGAAGAGGAGGAGAAGAAGAAGAAG  450

seq1  GAGAAGGAGAAGGGGAAGGGGAAGGGG  477
      |||||||||||||||||||||||||||
seq2  GAGAAGGAGAAGGGGAAGGGGAAGGGG  477