BAC Information

Click to search

BAC

Clone NameB6Ng01-141L09
Chromosome15 (Build37)
Map Location 19,176,878 - 19,328,135
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneEG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141L09.bB6Ng01-141L09.g
ACCDH940100DH940101
length1,045876
definitionDH940100|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L09, 5' end.DH940101|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,176,878 - 19,177,931)(19,327,262 - 19,328,135)
sequence
gaattctgctaaacctaagtggaccccgcgcagggccagcactgttccaa
ccttagcccttatcctactgcacctccagcaacactttaaaaaatgaact
ttaaaaccagcactggcataaatacctgttgctcactgtgcccgatatga
tcctctgattcttcccttctcttggagctccacaggaagcagtgttccct
cagaatctcctgccgttcctcaggtccctggcctggaagccaatctgtag
caagctgacccgacctgtggcttacaaggaccaggtacacctgggaggca
ggctggagctaaaagagacttaagacagcgagaaagataatggagccaag
atgattccctgttcaaggctcaatgtttattaacagtctgtgcctataaa
ggggggaagcccatcccctgccacaccaagcttcttgatgttttgttgcc
aagttgttagcactagtccgccagggctgttagcagtaagtcgccagttc
cactcttggttcctggagccattctgtcagcactctatcgccaggctggc
catctctcaggaagacagattcagcctcttggcaggtggcagaatctcag
ggcagttgtcacttcaaaagaagccagccaagttggaaagctgcaccaca
ggtggctccacctcagtggcaacaaggtttgtaccagcccgcttcggctg
ggataggctacacagacttacagattaacattgcatctgataggctattt
taatagaaaattgatattataggcataagacaaagtctgcatgcagtcac
atgttacagggaaaactcatcttctattttttctctcaatacaaactttt
ataggtttacttgaatctatcatccttctttataattttgtctttggaat
ttccatagcagttgcattcatcgacagttgaaggaaatctggtaatacaa
ataaatgttggataataatttaattcattccaagtctgtttaaaatgtga
gtatcatggacagacttatactaggtctgttatggaaaacattaa
gaattcttttgccacacagtcccaggattataagactggttaccatgcat
tcagtgacttaaatgtatttatttgaaatgtgtcatagtcaaaatgttat
ctttggcataaatgtaaagagtgttatttcctgcaatgcttttgcttaga
aaacagggaatctattttacagttgaattagaatttacctggatcatgta
aggaagaaaaggaaagattggcaggcacgggaggagcagaggaaggtaaa
actataatcaggatatattgtatgaaaaaataatccattttcaatgaaag
agagaaaaggggagagagaaaaatgttaacaatgcacttctcctaggagc
aactccaaatttgatgaacattgcaatggatgaaagccttgtgagagtac
tttctgtagataatgaaatattgcagaaccccaaaggacagaaaaaagag
aaaaggggagagaaagagcaggtgtcttaaatgacaatgtctaaaaactc
tacattagtttcaggaagataaaaaaagatgattttcttatctagagttt
ctataacacatagacagtaaatataagggtggcaaagatgactcctctgt
tatgaggattttctgagagtctgagtttggttctagcatccatgtcagga
atttccccgtcagcaaattaattaattcataaattaattaattaaatgtg
ttataaccaataccttatttttgacatacatgtaaagaatgctgctattt
catggtaatgcctgtgtgtgtgaaacatggcatctgttgcacaattcgaa
ggagcatttatttgaatcatgtgaggaacaagatatcctgcacacaaact
tatctgtctcagtacggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19176878_19177931
seq2: B6Ng01-141L09.b_46_1090

seq1  GAATTCTGCTAAACCTAAGTGGACCCAGCGCAGGGCCAGCACTGTTCCAA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTGCTAAACCTAAGTGGACCCCGCGCAGGGCCAGCACTGTTCCAA  50

seq1  CCTTAGCCCTTATCCTACTGCACCTCCAGCAACACTTTAAAAAATGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCCTTATCCTACTGCACCTCCAGCAACACTTTAAAAAATGAACT  100

seq1  TTAAAACCAGCACTGGCATAAATACCTGTTGCTCACTGTGCCCGATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAGCACTGGCATAAATACCTGTTGCTCACTGTGCCCGATATGA  150

seq1  TCCTCTGATTCTTCCCTTCTCTTGGAGCTCCACAGGAAGCAGTGTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGATTCTTCCCTTCTCTTGGAGCTCCACAGGAAGCAGTGTTCCCT  200

seq1  CAGAATCTCCTGCCGTTCCTCAGGTCCCTGGCCTGGAAGCCAATCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTCCTGCCGTTCCTCAGGTCCCTGGCCTGGAAGCCAATCTGTAG  250

seq1  CAAGCTGACCCGACCTGTGGCTTACAAGGACCAGGTACACCTGGGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGACCCGACCTGTGGCTTACAAGGACCAGGTACACCTGGGAGGCA  300

seq1  GGCTGGAGCTAAAAGAGACTTAAGACAGCGAGAAAGATAATGGAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGCTAAAAGAGACTTAAGACAGCGAGAAAGATAATGGAGCCAAG  350

seq1  ATGATTCCCTGTTCAAGGCTCAATGTTTATTAACAGTCTGTGCCTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCCTGTTCAAGGCTCAATGTTTATTAACAGTCTGTGCCTATAAA  400

seq1  GGGGGGAAGCCCATCCCCTGCCACACCAAGCTTCTTGATGTTTTGTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAAGCCCATCCCCTGCCACACCAAGCTTCTTGATGTTTTGTTGCC  450

seq1  AAGTTGTTAGCACTAGTCCGCCAGGGCTGTTAGCAGTAAGTCGCCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTAGCACTAGTCCGCCAGGGCTGTTAGCAGTAAGTCGCCAGTTC  500

seq1  CACTCTTGGTTCCTGGAGCCATTCTGTCAGCACTCTATCGCCAGGCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGTTCCTGGAGCCATTCTGTCAGCACTCTATCGCCAGGCTGGC  550

seq1  CATCTCTCAGGAAGACAGATTCAGCCTCTTGGCAGGTGGCAGAATCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCAGGAAGACAGATTCAGCCTCTTGGCAGGTGGCAGAATCTCAG  600

seq1  GGCAGTTGTCACTTCAAAAGAAGCCAGCCAAGTTGGAAAGCTGCACCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGTCACTTCAAAAGAAGCCAGCCAAGTTGGAAAGCTGCACCACA  650

seq1  GGTGGCTCCACCTCAGTGGCAACAAGGTTTGTACCAGCCCGCTTCAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTGGCTCCACCTCAGTGGCAACAAGGTTTGTACCAGCCCGCTTC-GGCT  699

seq1  GGGATAGGCTACACAGACTTACAGATTAACATTGCATCTGATAGGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGCTACACAGACTTACAGATTAACATTGCATCTGATAGGCTATT  749

seq1  TTAATAGAAAATTGATATTATAGGCATAAGACAAAGTCTGCATGCAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAAAATTGATATTATAGGCATAAGACAAAGTCTGCATGCAGTCA  799

seq1  CATGTTAACAGGGAAAACTCATCTTCTATTTTTTC-CCCAATACAAACTT  849
      |||||| |||||||||||||||||||||||||||| | ||||||||||||
seq2  CATGTT-ACAGGGAAAACTCATCTTCTATTTTTTCTCTCAATACAAACTT  848

seq1  TTAATAGGTTTACTTGAATCTATCATCCTCTTTAATAATTTTGTCTTTGG  899
      || ||||||||||||||||||||||||||  || ||||||||||||||||
seq2  TT-ATAGGTTTACTTGAATCTATCATCCTTCTTTATAATTTTGTCTTTGG  897

seq1  AAATTTCCATAGCAGTTGCATTCACCGACAGTTGAAGGAAATCCTGGTTA  949
       ||||||||||||||||||||||| ||||||||||||||||| |||| ||
seq2  -AATTTCCATAGCAGTTGCATTCATCGACAGTTGAAGGAAAT-CTGG-TA  944

seq1  ATACAAATAAATGTTTGATAAATAATTTAATTCATTCAAAGTCTGTTTTA  999
      ||||||||||||||| ||| ||||||||||||||||| ||||||| ||||
seq2  ATACAAATAAATGTTGGAT-AATAATTTAATTCATTCCAAGTCTG-TTTA  992

seq1  AAATGTGTAGTAATCATGGACAGAC-TATACTAGGTCATGTTATGGAAAA  1048
      ||||||| ||| ||||||||||||| ||||||||||| ||||||||||||
seq2  AAATGTG-AGT-ATCATGGACAGACTTATACTAGGTC-TGTTATGGAAAA  1039

seq1  CATTAA  1054
      ||||||
seq2  CATTAA  1045

seq1: chr15_19327262_19328135
seq2: B6Ng01-141L09.g_66_941 (reverse)

seq1  CCCCACCCCCCGTACTGAGGCAGATAAAGTTTGTGTGCAGG-TATCTTGT  49
      ||||||||||||||||||| ||||| ||||||||||||||| ||||||||
seq2  CCCCACCCCCCGTACTGAGACAGAT-AAGTTTGTGTGCAGGATATCTTGT  49

seq1  TCCTCACATGATTCAAGTAAATGCTCCTTCG-ATTGTGCAACAGATGCCA  98
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TCCTCACATGATTCAAATAAATGCTCCTTCGAATTGTGCAACAGATGCCA  99

seq1  TGTTTCACACACACAGGCATTACC-TGAAATAGCAGCATTCTTTACATGT  147
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTTCACACACACAGGCATTACCATGAAATAGCAGCATTCTTTACATGT  149

seq1  ATGTCAAAAATAAGGTATTGGTTATAACACATTTAATTAATTAATTAATG  197
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTCAAAAATAAGGTATTGGTTATAACACATTTAATTAATTAATTTATG  199

seq1  AATTAATTAATTTGCTGACGGGGAAATTCCTGACATGGATGCTAGAACCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAATTTGCTGACGGGGAAATTCCTGACATGGATGCTAGAACCA  249

seq1  AACTCAGACTCTCAGAAAATCCTCATAACAGAGGAGTCATCTTTGCCACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGACTCTCAGAAAATCCTCATAACAGAGGAGTCATCTTTGCCACC  299

seq1  CTTATATTTACTGTCTATGTGTTATAGAAACTCTAGATAAGAAAATCATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTACTGTCTATGTGTTATAGAAACTCTAGATAAGAAAATCATC  349

seq1  TTTTTTTATCTTCCTGAAACTAATGTAGAGTTTTTAGACATTGTCATTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATCTTCCTGAAACTAATGTAGAGTTTTTAGACATTGTCATTTA  399

seq1  AGACACCTGCTCTTTCTCTCCCCTTTTCTCTTTTTTCTGTCCTTTGGGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTGCTCTTTCTCTCCCCTTTTCTCTTTTTTCTGTCCTTTGGGGT  449

seq1  TCTGCAATATTTCATTATCTACAGAAAGTACTCTCACAAGGCTTTCATCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATATTTCATTATCTACAGAAAGTACTCTCACAAGGCTTTCATCC  499

seq1  ATTGCAATGTTCATCAAATTTGGAGTTGCTCCTAGGAGAAGTGCATTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGTTCATCAAATTTGGAGTTGCTCCTAGGAGAAGTGCATTGTT  549

seq1  AACATTTTTCTCTCTCCCCTTTTCTCTCTTTCATTGAAAATGGATTATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTCTCTCTCCCCTTTTCTCTCTTTCATTGAAAATGGATTATTT  599

seq1  TTTCATACAATATATCCTGATTATAGTTTTACCTTCCTCTGCTCCTCCCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACAATATATCCTGATTATAGTTTTACCTTCCTCTGCTCCTCCCG  649

seq1  TGCCTGCCAATCTTTCCTTTTCTTCCTTACATGATCCAGGTAAATTCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCAATCTTTCCTTTTCTTCCTTACATGATCCAGGTAAATTCTAA  699

seq1  TTCAACTGTAAAATAGATTCCCTGTTTTCTAAGCAAAAGCATTGCAGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGTAAAATAGATTCCCTGTTTTCTAAGCAAAAGCATTGCAGGAA  749

seq1  ATAACACTCTTTACATTTATGCCAAAGATAACATTTTGACTATGACACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTCTTTACATTTATGCCAAAGATAACATTTTGACTATGACACAT  799

seq1  TTCAAATAAATACATTTAAGTCACTGAATGCATGGTAACCAGTCTTATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAAATACATTTAAGTCACTGAATGCATGGTAACCAGTCTTATAA  849

seq1  TCCTGGGACTGTGTGGCAAAAGAATTC  874
      |||||||||||||||||||||||||||
seq2  TCCTGGGACTGTGTGGCAAAAGAATTC  876