BAC Information

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BAC

Clone NameB6Ng01-141M06
Chromosome18 (Build37)15 (Build37)
Map Location 71,030,863 - 71,030,99357,424,025 - 57,425,174
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141M06.bB6Ng01-141M06.g
ACCDH940140DH940141
length6891,146
definitionDH940140|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M06, 5' end.DH940141|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,030,863 - 71,030,993)(57,424,025 - 57,425,174)
sequence
gaattctaaatctcctagatttgaaaaatgggaagagggctagagttgag
tcaccaagcaccagtgacttaccagtctcacgcctatacaaagaaactga
ttaaaaccaaaaaggaaggaattcaaaggtgacttcgggttgatgaacat
atcaccaccctgggagggtagtgtgaccagagatgtgccacctccctacc
ttcctatgcaccaccaccaccaccaccaccaccaccaccaccaccactac
caccactaccaagctttgcactgtgcatatcttccatctcgtctggtcct
gagctctattctttaaaactaaagcagaaatgccgagaatagtgcagttc
tgagttctacacattatgtaacaaatactgaacccaaggaggaagttgtg
ggaagtcgatgaatttgaatttgtaaccattttggacaatagtatatagg
tagtatggacaccctggttacagctggcacctaagtcagggtattcttat
gggactgagatctcaccacagtcatcttttcatgggagtgatcattgtaa
agttgcctgtgctccagcaagtaacctcccgcctgtattcatacaaagca
acactaattaaacacacatacacacacacagggagagagagagagagaga
gagagagagagagagagagagagagagagggagagggat
gaattcttgcctctcttgttctccttctgtgcttctaggcaagggcaaca
ttttagagatttaataaccagcaaaggcaaggctccagggaatttgagca
ggtgccagactcatcagaacctcctaactaagcaggacactgtgtgtcta
gaaggaagaatgtgggtcctgtcattgacatgggcttagttccatcttag
atggctcttggaatccaccatagctgcacacctttgaacatgttaagatt
ttatggaacctcactgtcctcacacccatactgaataatattttcttaga
gtcattttgaaaatgcattgcatctctttattgctgggtaacaaagcaat
ctaaagcccaatggctcaatgggcctaggagatggctccgtgcagagtgc
ttgatgtccaaagcagaaggacctgagtttggattcccagtaaaaagcta
ggttaaccagagcctcatgtaaaatcattccccagcactttcaggtggga
aggagaaacaggtagatggggctccctggtttcctaacctagcgaaatgg
agaactccatggtcagtgagagaccccatggccagtgagagaccccatgg
ccagagagaatgcagagaacagtagaggaaaatactggaagcctacttct
gtcttccacttatgcacatacaggtgaacatgcacaggtatgcatacatg
cacaacactcatgtacatacgtacatacacacatatacacgcacacgcgt
gcacacacacacacacaccacaccacacaaaaaacttggcggcttacagc
agtcatgatttatactgctgggtagtccaaaaggtccaggcagggcttga
tggccaggtcttccattgtaggttgatatactggtaaatagaaacagctt
tgtataagatgacagatgaccattaagaaggacaagcagaagctgtcagc
ttttctgtttgatactacttgatggaagacttagtgatttatttcatggt
aattaattggctggcattgggtaagtcaaccttatgggagttaagaataa
aagggactgatgaccaactcaggtgtttacagctaaatctatcacgagca
gaagagaaaattaaagaaggggagatgccagtgtctgacattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71030863_71030993
seq2: B6Ng01-141M06.b_657_736 (reverse)

seq1  ATCCCTCTCTATATTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
                                  || ||||| |||||||||||||
seq2  ---------------------------ATCCCTCTCCCTCTCTCTCTCTC  23

seq1  TCTCTCTCTCTCCCTCTCTCCCTCCCTCCTTCTCTCTCTCTATCTCTGTT  100
      |||||||||||| |||||||          ||||||||||          
seq2  TCTCTCTCTCTCTCTCTCTC----------TCTCTCTCTC----------  53

seq1  TCTGTCTCTCTCTGTGTGTGTATGTGTGTTT  131
          |||| || |||||||||||||||||||
seq2  ----TCTCCCTGTGTGTGTGTATGTGTGTTT  80

seq1: chr15_57424025_57425174
seq2: B6Ng01-141M06.g_71_1216 (reverse)

seq1  AGAGAATGTCA-ACACTGGCTACTCCACCTTTCTTTAA-TTTCTCTTCTG  48
      ||||||||||| ||||||||  |||  || |||||||| |||||||||||
seq2  AGAGAATGTCAGACACTGGCATCTC--CCCTTCTTTAATTTTCTCTTCTG  48

seq1  ACTCTGGATGAGTTTAGGCTGTAAAACACTGGGTTGGTCATTCAGTCCCT  98
       |||  ||| || ||  ||||||||   ||| |||||||| |||||||||
seq2  -CTCGTGAT-AGATTTAGCTGTAAACACCTGAGTTGGTCA-TCAGTCCCT  95

seq1  TTTATTCTTAACTCCAATAAGCTTTGACTTTACCCCAATG-CAGCCAATT  147
      ||||||||||||||| |||||  |||||||   ||||||| |||||||||
seq2  TTTATTCTTAACTCCCATAAG-GTTGACTT--ACCCAATGCCAGCCAATT  142

seq1  AATTA-CATGAAATAAATCACTAAGTC-TCCATCAAGTAGTATCAAACAG  195
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTACCATGAAATAAATCACTAAGTCTTCCATCAAGTAGTATCAAACAG  192

seq1  -AAAGCTGACAGCTTCTGCTTGTCCTTCTAATTGGTCATCTGTCATC-TA  243
       |||||||||||||||||||||||||||| | ||||||||||||||| ||
seq2  AAAAGCTGACAGCTTCTGCTTGTCCTTCTTAATGGTCATCTGTCATCTTA  242

seq1  TACAAAGCTGTTTCTATTTACCAGGTATATACAACCTACAATGGAAGACC  293
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TACAAAGCTGTTTCTATTTACCA-GTATAT-CAACCTACAATGGAAGACC  290

seq1  TGGCCATCAAGCCCTGCCTGGACCTTTTGGACTACCCAGCAGTAATAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGCCATCAAGCCCTGCCTGGACCTTTTGGACTACCCAGCAGT-ATAAAT  339

seq1  CATGACTGCTGTAAGCCGCCAAGTTTTTTGTGTGGTGTGGTGTGTGTGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGCTGTAAGCCGCCAAGTTTTTTGTGTGGTGTGGTGTGTGTGTG  389

seq1  TGTGTGCACGCGTGTGCGTGTATATGTGTGTATGTACGTATGTACATGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACGCGTGTGCGTGTATATGTGTGTATGTACGTATGTACATGAG  439

seq1  TGTTGTGCATGTATGCATACCTGTGCATGTTCACCTGTATGTGCATAAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCATGTATGCATACCTGTGCATGTTCACCTGTATGTGCATAAGT  489

seq1  GGAAGACAGAAGTAGGCTTCCAGTATTTTCCTCTACTGTTCTCTGCATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGAAGTAGGCTTCCAGTATTTTCCTCTACTGTTCTCTGCATTC  539

seq1  TCTCTGGCCATGGGGTCTCTCACTGGCCATGGGGTCTCTCACTGACCATG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCATGGGGTCTCTCACTGGCCATGGGGTCTCTCACTGACCATG  589

seq1  GAGTTCTCCATTTCGCTAGGTTAGGAAACCAGGGAGCCCCATCTACCTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCCATTTCGCTAGGTTAGGAAACCAGGGAGCCCCATCTACCTGT  639

seq1  TTCTCCTTCCCACCTGAAAGTGCTGGGGAATGATTTTACATGAGGCTCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCCCACCTGAAAGTGCTGGGGAATGATTTTACATGAGGCTCTG  689

seq1  GTTAACCTAGCTTTTTACTGGGAATCCAAACTCAGGTCCTTCTGCTTTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTAGCTTTTTACTGGGAATCCAAACTCAGGTCCTTCTGCTTTGG  739

seq1  ACATCAAGCACTCTGCACGGAGCCATCTCCTAGGCCCATTGAGCCATTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGCACTCTGCACGGAGCCATCTCCTAGGCCCATTGAGCCATTGG  789

seq1  GCTTTAGATTGCTTTGTTACCCAGCAATAAAGAGATGCAATGCATTTTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGATTGCTTTGTTACCCAGCAATAAAGAGATGCAATGCATTTTCA  839

seq1  AAATGACTCTAAGAAAATATTATTCAGTATGGGTGTGAGGACAGTGAGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTCTAAGAAAATATTATTCAGTATGGGTGTGAGGACAGTGAGGT  889

seq1  TCCATAAAATCTTAACATGTTCAAAGGTGTGCAGCTATGGTGGATTCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAATCTTAACATGTTCAAAGGTGTGCAGCTATGGTGGATTCCAA  939

seq1  GAGCCATCTAAGATGGAACTAAGCCCATGTCAATGACAGGACCCACATTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTAAGATGGAACTAAGCCCATGTCAATGACAGGACCCACATTC  989

seq1  TTCCTTCTAGACACACAGTGTCCTGCTTAGTTAGGAGGTTCTGATGAGTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTAGACACACAGTGTCCTGCTTAGTTAGGAGGTTCTGATGAGTC  1039

seq1  TGGCACCTGCTCAAATTCCCTGGAGCCTTGCCTTTGCTGGTTATTAAATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTGCTCAAATTCCCTGGAGCCTTGCCTTTGCTGGTTATTAAATC  1089

seq1  TCTAAAATGTTGCCCTTGCCTAGAAGCACAGAAGGAGAACAAGAGAGGCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGTTGCCCTTGCCTAGAAGCACAGAAGGAGAACAAGAGAGGCA  1139

seq1  AGAATTC  1150
      |||||||
seq2  AGAATTC  1146