BAC Information

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BAC

Clone NameB6Ng01-142F08
Chromosome1 (Build37)15 (Build37)
Map Location 144,356,952 - 144,358,14332,715,211 - 32,715,656
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F08.bB6Ng01-142F08.g
ACCDH940556DH940557
length1,181561
definitionDH940556|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F08, 5' end.DH940557|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,356,952 - 144,358,143)(32,715,211 - 32,715,656)
sequence
gaattcctacccatattcaaggaagtaatgatatttggtagcagcaggga
gagggaaagttagttcttttaaatatttaacagtagatcagttgaccata
ctccagaaaaaaagccacatatccaaggatgtatgggcagaccaaatagg
aatcaataggcttacaacaaaaataacacaaagttgtgagggtagggaag
agtagtgtatcgcaaataaattcgacaagggtgtgaaaatatcccaagta
cattgtaaaacttctctattaataataattttatataataaaaagaaaat
taaaatttcaaaaatgatattggatattataaaatgaaaaatactgaaaa
gatgcagaatgggaaaggatttaaacatttttggtcaacatgtaagtact
atagctactgtggaaatgtgatgatatagtgaagataaaataaataattt
aaacaaaaccttaccatccactgcaatagagacagtaatcagaaatcctc
tacctaaaaaaagactaagaccaagggcacttattggagaattaaatcac
atattgtaaaaaacaacatagatccttcagaaaattaataacatacaaat
aatatctattccaccttctttactcattcatacatatctaaaaaaaggat
gtcaggaaacccatggctgagaactatatactcatatttactgtatcact
attttcagtatgttagataaagaattaatcttgtcaacatgtacaacaaa
gtagaaaatacacatattaaatagataaagaaaattatataaaaataaat
atataataaaatataaaacatacatgtgtacatacatgtatatataatat
tgtataaacatcttcaccttacatatagatataggtataggggtagaaat
agagataaaattgtgctgataaacagtatgtacatgaaggaaaattgata
gaactagagcattctatatgaaaaaaatagagcaaaaaataagacaaata
ttgattatcctcaccaaatagaaattcagggacaaatgatctgaagtcag
gagttgttagtaggagggtgagatcagaaggttaggggaagaaagcatta
agaggggtgacatatatacgtattgtggcttgtctattttggagaaaaaa
tgatcttattcattttgtacaggtttagtcc
gaattcagaacttttcagctggggaacgaggtaagtctgatcttgaactt
tctaaggaaattcaagacagtctatcagaagtaaagtggaaaatggcttt
acaagttaggtttggccttgaattttttctggtgttaggagcccttttgt
tccttttcacatgttatatagtgcttaagatagggctgaaaattctagag
gaaattcaggacagtctatcagaagtaaagcggggagagagagtaggagc
aaggagaaacggtaagtatacaggcctttccaagggtcttgaacccgagg
aaaagttaaggtcaggtaggaatacctggggagagattagaaggaagaaa
aagaaaaaagaaaagaaaaaagatcaattagcggaggtctctaggagata
ctcgtcactagatgagctcaggaagccagctcttagtaactctgaagcaa
gtgaagaatcctcctctgaggaaacagactgggagaaaaaaagcggctca
tttatgaaagaaaaaggataccagccgccaagtaaaggtgctaactagtc
atttaagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144356952_144358143
seq2: B6Ng01-142F08.b_45_1225

seq1  GAATTCCTACCCATATTCAAGGAAGTAATGATATTTGGTAGCAGCAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCCATATTCAAGGAAGTAATGATATTTGGTAGCAGCAGGGA  50

seq1  GAGGGAAAGTTAGTTCTTTTAAATATTTAACAGTAGATCAGTTGACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAGTTAGTTCTTTTAAATATTTAACAGTAGATCAGTTGACCATA  100

seq1  CTCCAGAAAAAAAGCCACATATCCAAGGATGTATGGGCAGACCAAATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAAAAAAGCCACATATCCAAGGATGTATGGGCAGACCAAATAGG  150

seq1  AATCAATAGGCTTACAACAAAAATAACACAAAGTTGTGAGGGTAGGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATAGGCTTACAACAAAAATAACACAAAGTTGTGAGGGTAGGGAAG  200

seq1  AGTAGTGTATCGCAAATAAATTCGACAAGGGTGTGAAAATATCCCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTATCGCAAATAAATTCGACAAGGGTGTGAAAATATCCCAAGTA  250

seq1  CATTGTAAAACTTCTCTATTAATAATAATTTTATATAATAAAAAGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAAAACTTCTCTATTAATAATAATTTTATATAATAAAAAGAAAAT  300

seq1  TAAAATTTCAAAAATGATATTGGATATTATAAAATGAAAAATACTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCAAAAATGATATTGGATATTATAAAATGAAAAATACTGAAAA  350

seq1  GATGCAGAATGGGAAAGGATTTAAACATTTTTGGTCAACATGTAAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAATGGGAAAGGATTTAAACATTTTTGGTCAACATGTAAGTACT  400

seq1  ATAGCTACTGTGGAAATGTGATGATATAGTGAAGATAAAATAAATAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACTGTGGAAATGTGATGATATAGTGAAGATAAAATAAATAATTT  450

seq1  AAACAAAACCTTACCATCCACTGCAATAGAGACAGTAATCAGAAATCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCTTACCATCCACTGCAATAGAGACAGTAATCAGAAATCCTC  500

seq1  TACCTAAAAAAAGACTAAGACCAAGGGCACTTATTGGAGAATTAAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAAAAAAGACTAAGACCAAGGGCACTTATTGGAGAATTAAATCAC  550

seq1  ATATTGTAAAAAACAACATAGATCCTTCAGAAAATTAATAACATACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAAAAACAACATAGATCCTTCAGAAAATTAATAACATACAAAT  600

seq1  AATATCTATTCCACCTTCTTTACTCATTCATACATATCTAAAAAAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTATTCCACCTTCTTTACTCATTCATACATATCTAAAAAAAGGAT  650

seq1  GTCAGGAAACCCATGGCTGAGAACTATATACTCATATTTACTGTATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAACCCATGGCTGAGAACTATATACTCATATTTACTGTATCACT  700

seq1  ATTTTCAGTATGTTAGATAAAGAATTAATCTTGTCAACATGTACAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTATGTTAGATAAAGAATTAATCTTGTCAACATGTACAACAAA  750

seq1  GTAGAAAATACACATATTAAATAGATAAAGAAAATTATATAAAAATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATACACATATTAAATAGATAAAGAAAATTATATAAAAATAAAT  800

seq1  ATATAATAAAATATAAAACATACATGTGTACATACATGTATATATAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAAATATAAAACATACATGTGTACATACATGTATATATAATAT  850

seq1  TGTATAAACATCTTCACCTTACATATAGATATAGGTATAGGGGTAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAACATCTTCACCTTACATATAGATATAGGTATAGGGGTAGAAAT  900

seq1  AGAGATAAAATTGTGCTGATAAACAGTATGTACATGAAGGAAAATTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAATTGTGCTGATAAACAGTATGTACATGAAGGAAAATTGATA  950

seq1  GAACTAGAGCATTCTATATGAAAAAAATAAGAGCAAAAAATAAAGACAAA  1000
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  GAACTAGAGCATTCTATATGAAAAAAAT-AGAGCAAAAAAT-AAGACAAA  998

seq1  TATTGAATATCCTCACCAAAATAGAAATTCAGGGGACAAATGATCTGAAG  1050
      |||||| |||||||||| ||||||||||||| ||||||||||||||||| 
seq2  TATTGATTATCCTCACC-AAATAGAAATTCA-GGGACAAATGATCTGAA-  1045

seq1  GTCAAGGAGTTGTTAGTAGGAAGGGGTTGAGGATCAGAAAGTTAGGGGGA  1100
      ||| |||||||||||||||||   || ||| |||||||| |||| |||||
seq2  GTC-AGGAGTTGTTAGTAGGA---GGGTGA-GATCAGAAGGTTA-GGGGA  1089

seq1  AGAAAAGCATTAGAGA-GGGTGAGCATATATACGTATTGTG--CTGTCTA  1147
      || ||||||||| ||| |||||| |||||||||||||||||   ||||||
seq2  AG-AAAGCATTA-AGAGGGGTGA-CATATATACGTATTGTGGCTTGTCTA  1136

seq1  TTTGTGGATGAAAAAATAGATCTAATTCA-TTTGTACAG--TTAGTCC  1192
      ||| |||| |||||||| ||||| ||||| |||||||||  |||||||
seq2  TTT-TGGA-GAAAAAAT-GATCTTATTCATTTTGTACAGGTTTAGTCC  1181

seq1: chr15_32715211_32715656
seq2: B6Ng01-142F08.g_67_478 (reverse)

seq1  TCTAGTGATGAGTATAGGCTCCTTCTCCTAGAGACCTCCGCTAATTGATC  50
      |||||||| |||||         |||||||||||||||||||||||||||
seq2  TCTAGTGACGAGTA---------TCTCCTAGAGACCTCCGCTAATTGATC  41

seq1  TTTTTTCTTTTC------------CTTCCTTCTAATCTCTCCCCAGGTAT  88
      ||||||||||||            ||||||||||||||||||||||||||
seq2  TTTTTTCTTTTCTTTTTTCTTTTTCTTCCTTCTAATCTCTCCCCAGGTAT  91

seq1  TCTTACCTGACCTAAACTTTTCCTCAGGTTCAAGACCCGTGGAAAGGCCT  138
      || |||||||||| ||||||||||| |||||||||||| |||||||||||
seq2  TCCTACCTGACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCT  141

seq1  ATATACTTATTTTGTGTACAATATTTCCTCTTTGCTCCTACTCTCTCTCC  188
       |||||||            |   || ||| |||||||||||||||||||
seq2  GTATACTT------------ACCGTTTCTCCTTGCTCCTACTCTCTCTCC  179

seq1  CCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCC  238
      ||||||||||||||||||| || |||||||||| || |||||||||||||
seq2  CCGCTTTACTTCTGATAGACTGTCCTGAATTTCCTCTAGAATTTTCAGCC  229

seq1  CTGCCTTAACCGCTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAAC  288
      ||  ||||| | ||  ||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAGCACTATATAACATGTGAAAAGGAACAAAAGGGCTCCTAAC  279

seq1  ACTAGAAAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTT  338
      || ||||||| ||||||||||||| || |||||||||| |||| ||||||
seq2  ACCAGAAAAAATTCAAGGCCAAACCTAACTTGTAAAGCCATTTTCCACTT  329

seq1  TACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACT  388
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGACT  379

seq1  TACCTTGTAAAGCTATACTTACGGGTACCCTGTTCCCCAGCTGAAGAGTT  438
      |||||                          |||||||||||||| ||||
seq2  TACCT-------------------------CGTTCCCCAGCTGAAAAGTT  404

seq1  CTGAATTC  446
      ||||||||
seq2  CTGAATTC  412