BAC Information

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BAC

Clone NameB6Ng01-142H24
Chromosome15 (Build37)
Map Location 87,450,700 - 87,602,894
singlet/doubletdoublet
Overlap geneAW049604
Upstream geneLOC100042309
Downstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142H24.bB6Ng01-142H24.g
ACCDH940684DH940685
length1,0721,127
definitionDH940684|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H24, 5' end.DH940685|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,450,700 - 87,451,760)(87,601,772 - 87,602,894)
sequence
gaattcttttcctgagatttgtctgtgagctggttttaagaattgtgtag
agacagagttgttccctggaccgttccgtccatgtagcttcccacagagg
agaccagtgactagaaacacggagagaaagagagagacgtggtatttcac
tgtaaagatcttgcctgttgatggaaattcttcccaatttcagggcccag
tgcttcttcgtgcatcttctgcaccacgcctctacacctcgaaagtctcc
tggctatctgttcttccatgtgattcctttctctgctgaagcctctgtca
gctctctgagcaggatgtgggtgggaaggtcccttcagctgccctctgtg
gacagaggagctggccagcatctttcgtagtgtcttttcccaccagcctg
gaaggacactgctcttctctggagggaaaggcagcattgctaaacaaaag
cccattgtcgcttctctgattccatgggtcagaagtctacttggttttac
aggctttcagggctgcttggctctgggtagcaagcccttccgttttcgta
cctcttcctcctctttgatcttttctgcctccagactttctaataggaga
cttggacacctgagatcttctccccacattgtatcacccctaggcctttc
ctgtgttccccttctgtggggctccaccctgcaagtttgctgactactct
ctagaccctggcctttttcaccacataacacagccctgcatcttaagacc
tgaacactgtgttcatcttaaagcctattttgtctcctggttttgtgtgg
tcactatagtgtttccctatatggttttagcaagatgatggaatttagga
ttattatagttcctttcttcatccccaaatcatttctggccttctcagaa
ttagctgtggaatgtatatttctgcctccctttctgtgcttggctttttg
tagatacctggtgaatctgtttgtcccggcttctggtacctgggagggaa
gctggaggtctacagccaagagagaagtacctggtcagtgtgttcaggaa
acaagtcagaattatagataaa
gaattctgggaggcagagcaaggaggatttctgttaagacctgtcctggg
gtacagggctcatgctaaatctgaaaaacagagtgggaacttatctcaaa
caaccagcagatccgtcaaccaacccacccaacaaatgagcagcaacaga
ctacagaaaagaaaagaaaagaaaagaaaggaaaggaaaggaaaagaaaa
gaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaagaaaaaaagaa
aatgaagctttctggctattttttttttgagagagagagagagaatttgt
taatttgatattgttttgttttgactgtattacttattactgctctattt
agctttactgtatctccatggctcaatttttgtaggttgtatacagaatt
ctatccctttcttattcatctttgatttattggtgtgtaggttcacgata
ccggatgatactttgtatctgttttactccccctttgtcactgtgtcaaa
tgcttgggaggcaaatgtgaaaggtttattgtggctcaaggtatccgggg
ctttattccatggtgcctaggtctgtgggcctggagtgaaacagaaggtc
atggtggtgggaacatatacaccaggaggctgctcacctagtgggggcag
aggagatagcagagagagggagagagcaaggggccaggggaccaggagcc
aggagccaggggccagacaaagccttcagagatttacctacagtggtctc
ttttctcctacagggccccacttcctactattccatctgccatgaaccta
caggtgaaataatccactgtttgaagctaatgtcttgatttgtggtgaaa
attatggtttctttaaccatacagctatgttatgtaaatacgatttgctt
taatcccagatgtgggattaaaaactgcttcagaatggtgcacaggcagc
tgactattgatttgccttgtggctctggcagggcgtgttttgccagccga
agacagttatatttgaaatctcgggactcttagagggcatgacaatgtcg
aaaagaggtgatggcagttgcctgtttcccctgccctgtcccctgcctgg
tggctgatcctattatgccggatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_87450700_87451760
seq2: B6Ng01-142H24.b_42_1113

seq1  GAATTCTTTTCCTGAGATTTGTCTGTGAGCTGGTTTTAAGAATTGTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTGAGATTTGTCTGTGAGCTGGTTTTAAGAATTGTGTAG  50

seq1  AGACAGAGTTGTTCCCTGGACCGTTCCGTCCATGTAGCTTCCCACAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTTGTTCCCTGGACCGTTCCGTCCATGTAGCTTCCCACAGAGG  100

seq1  AGACCAGTGACTAGAAACACGGAGAGAAAGAGAGAGACGTGGTATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGACTAGAAACACGGAGAGAAAGAGAGAGACGTGGTATTTCAC  150

seq1  TGTAAAGATCTTGCCTGTTGATGGAAATTCTTCCCAATTTCAGGGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGATCTTGCCTGTTGATGGAAATTCTTCCCAATTTCAGGGCCCAG  200

seq1  TGCTTCTTCGTGCATCTTCTGCACCACGCCTCTACACCTCGAAAGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCGTGCATCTTCTGCACCACGCCTCTACACCTCGAAAGTCTCC  250

seq1  TGGCTATCTGTTCTTCCATGTGATTCCTTTCTCTGCTGAAGCCTCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCTGTTCTTCCATGTGATTCCTTTCTCTGCTGAAGCCTCTGTCA  300

seq1  GCTCTCTGAGCAGGATGTGGGTGGGAAGGTCCCTTCAGCTGCCCTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAGCAGGATGTGGGTGGGAAGGTCCCTTCAGCTGCCCTCTGTG  350

seq1  GACAGAGGAGCTGGCCAGCATCTTTCGTAGTGTCTTTTCCCACCAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAGCTGGCCAGCATCTTTCGTAGTGTCTTTTCCCACCAGCCTG  400

seq1  GAAGGACACTGCTCTTCTCTGGAGGGAAAGGCAGCATTGCTAAACAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACACTGCTCTTCTCTGGAGGGAAAGGCAGCATTGCTAAACAAAAG  450

seq1  CCCATTGTCGCTTCTCTGATTCCATGGGTCAGAAGTCTACTTGGTTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTCGCTTCTCTGATTCCATGGGTCAGAAGTCTACTTGGTTTTAC  500

seq1  AGGCTTTCAGGGCTGCTTGGCTCTGGGTAGCAAGCCCTTCCGTTTTCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCAGGGCTGCTTGGCTCTGGGTAGCAAGCCCTTCCGTTTTCGTA  550

seq1  CCTCTTCCTCCTCTTTGATCTTTTCTGCCTCCAGACTTTCTAATAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTCCTCTTTGATCTTTTCTGCCTCCAGACTTTCTAATAGGAGA  600

seq1  CTTGGACACCTGAGATCTTCTCCCCACATTGTATCACCCCTAGGCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACACCTGAGATCTTCTCCCCACATTGTATCACCCCTAGGCCTTTC  650

seq1  CTGTGTTCCCCTTCTGT-GGGCTCCACCCTGCAAGTTTGCTGACTACTCT  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCCCTTCTGTGGGGCTCCACCCTGCAAGTTTGCTGACTACTCT  700

seq1  CTAGA-CCTGGCCTTTTTCACCACATAACACAGCCCTGCATCTTAAGACC  748
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCCTGGCCTTTTTCACCACATAACACAGCCCTGCATCTTAAGACC  750

seq1  TGAACACTGTGTTCATCTT-AAGCCTATTTTGTCTCCTGGTTTTGTGTGG  797
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAACACTGTGTTCATCTTAAAGCCTATTTTGTCTCCTGGTTTTGTGTGG  800

seq1  TCACTATAGTGTTTCCTTATAT-GTTTTAGCAAGATGATGGAATTTAGGA  846
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  TCACTATAGTGTTTCCCTATATGGTTTTAGCAAGATGATGGAATTTAGGA  850

seq1  TTATTATAGTTCCTTTCTTCATCCCCAAATCATTTCT-GCCTTCTCAGAA  895
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATTATAGTTCCTTTCTTCATCCCCAAATCATTTCTGGCCTTCTCAGAA  900

seq1  TTAGCTGTGGAATGTATATTTTCTGCCTCCCTTTTCTGTGCTTGGCTTTT  945
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTAGCTGTGGAATGTATA-TTTCTGCCTCCC-TTTCTGTGCTTGGCTTTT  948

seq1  TGTAGATACCTGGTGATCCTGTTTGT-CCGGC-TCTGTTACATGGGAGGG  993
      ||||||||||||||||  |||||||| ||||| |||| ||| ||||||||
seq2  TGTAGATACCTGGTGAATCTGTTTGTCCCGGCTTCTGGTACCTGGGAGGG  998

seq1  AAGCTGGAGGTCTACAGCC-AGAGAGCAGTAACTGGTCA--GTGTTCAGG  1040
      ||||||||||||||||||| |||||| |||| |||||||  |||||||||
seq2  AAGCTGGAGGTCTACAGCCAAGAGAGAAGTACCTGGTCAGTGTGTTCAGG  1048

seq1  AAAC-AGTCAGAA-TATAG-TAAA  1061
      |||| |||||||| ||||| ||||
seq2  AAACAAGTCAGAATTATAGATAAA  1072

seq1: chr15_87601772_87602894
seq2: B6Ng01-142H24.g_70_1196 (reverse)

seq1  TGAAATCCGGCAATAGTAGGATCAGCCAC--AGCAGGGG-CAGCGCAGGG  47
      ||||||||||| ||| |||||||||||||   ||||||| ||| ||||||
seq2  TGAAATCCGGC-ATAATAGGATCAGCCACCAGGCAGGGGACAGGGCAGGG  49

seq1  GTAACA-GCAACTGCCATCACCTCTCTCTGACATTGTCATGCCCTCTCAA  96
      | |||| |||||||||||||||||| |  |||||||||||||||||| ||
seq2  GAAACAGGCAACTGCCATCACCTCTTTTCGACATTGTCATGCCCTCT-AA  98

seq1  GAGTCCCCAGAATTTCAAATATAAACTGTCTTCGGCTGGCAAAACCACGC  146
      ||||||| || ||||||||||| ||||||||||||||||||||| |||| 
seq2  GAGTCCCGAG-ATTTCAAATAT-AACTGTCTTCGGCTGGCAAAA-CACG-  144

seq1  CCCTGCCAGAG-CACAAGGCAAATC-ATAGTCAGCTG-CTGTGCA-CAAT  192
      ||||||||||| ||||||||||||| ||||||||||| ||||||| || |
seq2  CCCTGCCAGAGCCACAAGGCAAATCAATAGTCAGCTGCCTGTGCACCATT  194

seq1  CTGAAGCAGTTTTATATCCCACATCTGGGATTAAAGCAAATCGTATTTAC  242
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGTTTTTAATCCCACATCTGGGATTAAAGCAAATCGTATTTAC  244

seq1  ATAACATAGCTGTATTGTTAAAGAAACCATAATTCTCACCACAAATCAGG  292
      ||||||||||||||| |||||||||||||||||| ||||||||||||| |
seq2  ATAACATAGCTGTATGGTTAAAGAAACCATAATTTTCACCACAAATCAAG  294

seq1  ACATTAGCTTC-AACAGTGGATTATTTCACCTGTAGGTTCATGGCAGATG  341
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCTTCAAACAGTGGATTATTTCACCTGTAGGTTCATGGCAGATG  344

seq1  GAATAGTAGGAAGTGGGGCCCTGTAGGAGGAAAGAGACCACTGTAGGTAA  391
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATAGTAGGAAGTGGGGCCCTGTAGGAGAAAAGAGACCACTGTAGGTAA  394

seq1  ATCTCTGAAGGCTTTGTCTGGCCCCTGGCTCCTGGCTCCTGGT-CCCTGG  440
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTCTGAAGGCTTTGTCTGGCCCCTGGCTCCTGGCTCCTGGTCCCCTGG  444

seq1  CCCCTTGCTCTCTCCCTCTCTCTGCTATCTCCTCTGCCCCCACTAGGTGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCTCTCTCCCTCTCTCTGCTATCTCCTCTGCCCCCACTAGGTGA  494

seq1  GCAGCCTCCTGGTGTATATGTTCCCACCACCATGACCTTCTGTTTCACTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCCTGGTGTATATGTTCCCACCACCATGACCTTCTGTTTCACTC  544

seq1  CAGGCCCACAGACCTAGGCACCATGGAATAAAGCCCCGGATACCTTGAGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCACAGACCTAGGCACCATGGAATAAAGCCCCGGATACCTTGAGC  594

seq1  CACAATAAACCTTTCACATTTGCCTCCCAAGCATTTGACACAGTGACAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAACCTTTCACATTTGCCTCCCAAGCATTTGACACAGTGACAAA  644

seq1  GGGGGAGTAAAACAGATACAAAGTATCATCCGGTATCGTGAACCTACACA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTAAAACAGATACAAAGTATCATCCGGTATCGTGAACCTACACA  694

seq1  CCAATAAATCAAAGATGAATAAGAAAGGGATAGAATTCTGTATACAACCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAATCAAAGATGAATAAGAAAGGGATAGAATTCTGTATACAACCT  744

seq1  ACAAAAATTGAGCCATGGAGATACAGTAAAGCTAAATAGAGCAGTAATAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTGAGCCATGGAGATACAGTAAAGCTAAATAGAGCAGTAATAA  794

seq1  GTAATACAGTCAAAACAAAACAATATCAAATTAACAAATTCTCTCTCTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAGTCAAAACAAAACAATATCAAATTAACAAATTCTCTCTCTCT  844

seq1  CTCTCAAAAAAAAAATAGCCAGAAAGCTTCATTTTCTTTTTTTCTTTCTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAAAAAAAATAGCCAGAAAGCTTCATTTTCTTTTTTTCTTTCTT  894

seq1  TTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCTTTCCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCTTTCCT  944

seq1  TTCCTTTCTTTTCTTTTCTTTTCTTTTCTGTAGTCTGTTGCTGCTCATTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTTTCTTTTCTTTTCTTTTCTGTAGTCTGTTGCTGCTCATTT  994

seq1  GTTGGGTGGGTTGGTTGACGGATCTGCTGGTTGTTTGAGATAAGTTCCCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGGGTTGGTTGACGGATCTGCTGGTTGTTTGAGATAAGTTCCCA  1044

seq1  CTCTGTTTTTCAGATTTAGCATGAGCCCTGTACCCCAGGACAGGTCTTAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTTCAGATTTAGCATGAGCCCTGTACCCCAGGACAGGTCTTAA  1094

seq1  CAGAAATCCTCCTTGCTCTGCCTCCCAGAATTC  1123
      |||||||||||||||||||||||||||||||||
seq2  CAGAAATCCTCCTTGCTCTGCCTCCCAGAATTC  1127