BAC Information

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BAC

Clone NameB6Ng01-143B08
Chromosome15 (Build37)
Map Location 11,854,638 - 11,998,143
singlet/doubletdoublet
Overlap geneSub1, LOC100040027
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3, LOC381002
Downstream geneZfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B08.bB6Ng01-143B08.g
ACCDH941116DH941117
length3811,122
definitionDH941116|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B08, 5' end.DH941117|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,997,763 - 11,998,143)(11,854,638 - 11,855,774)
sequence
acttgaagatggcggaaggaactccctaaagacaacaggggaagccactc
tccatgttctgccctccttgcatttatccctcagccttgctgtagcaggt
tttattttattttattttttccagaacacttgacccctccctcagcctga
acttgcagcttcatccccgattttcctggatggacccagggctttgagcc
aggaaagtgctggaaagaacaggattgccctgggggagtggcagaggtag
ggatccaaatccctgacatatcccagcttaaaaagtcatcaggatacttt
attaagaagcttgtctgcctcattgtgttatttggatccatttcgactct
aaccctgggaggaagaagggagggagggagg
gaattccatatagtaatcaaatacttgatcaccctaaataaaatcgtaga
gttgttacaaagaaaggaaaaattgaaggaatgaataatgagggaccaac
accaaatggtagcctttgagtacagtggtccctctgtagccatggttaca
cattctagtacttagcaaaatccatgaaaagtaatttagtgttgtcatct
aagccacacatccatgtgctttaaataatctcctgattacctgtaatgta
taaaaatttaaatgcagctgggcgtggtggggcacgcctttaatcccagc
actcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtc
tacaaagtgagttccaggacagccagggctacacagagaaaccctgtctc
gaaaaaacaaaacaaaacaaaaaaatttaaatgctatgtaaataggttta
caatgtgctgtttaggaaacaatagcaaggaaaaagtatgtacacattca
acctggatgaagtattttcctgcatatatttatccgtagttcattgaatc
cgcaagtgcagaagcagcagtagagagtgccagctgtctgtattacaaac
cacaacttctagtcaggcataggactaacctagaaagcttagaccataaa
ctataggattagcacataaaataatccaagccataatttctctgaacaat
atccaagatgtctccatttcctatttatgtgtaacaaaccacctcaacat
tagtgtctttaaagagcaacaatctattatttctacttacaagtcttcat
cagagaagttcaactgtctatttcttctggtggctactctacgatgctga
agatgcttaaaaccaaagttggagagacctcatttaactgcctggaagct
aggtctaggggctatcaactaagtttcagagctcagtgacacagcctttt
ccctggtcacctggatttcatacagagtgatgacaccattctagtaaggc
atttacaggcacaggtgcttctcagtctctggcatgcatgatactgctga
agtctcattggccaaattattcaatgaaccaggcaggaggtgtaagaacc
tatctggtggagaactaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_11997763_11998143
seq2: B6Ng01-143B08.b_54_434 (reverse)

seq1  CCTCCCTCCCTCCCTTCTTCCTCCCAGGGTTAGAGTCGAAATGGATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTTCTTCCTCCCAGGGTTAGAGTCGAAATGGATCCAA  50

seq1  ATAACACAATGAGGCAGACAAGCTTCTTAATAAAGTATCCTGATGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAATGAGGCAGACAAGCTTCTTAATAAAGTATCCTGATGACTTT  100

seq1  TTAAGCTGGGATATGTCAGGGATTTGGATCCCTACCTCTGCCACTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGGGATATGTCAGGGATTTGGATCCCTACCTCTGCCACTCCCCC  150

seq1  AGGGCAATCCTGTTCTTTCCAGCACTTTCCTGGCTCAAAGCCCTGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATCCTGTTCTTTCCAGCACTTTCCTGGCTCAAAGCCCTGGGTCC  200

seq1  ATCCAGGAAAATCGGGGATGAAGCTGCAAGTTCAGGCTGAGGGAGGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGAAAATCGGGGATGAAGCTGCAAGTTCAGGCTGAGGGAGGGGTC  250

seq1  AAGTGTTCTGGAAAAAATAAAATAAAATAAAACCTGCTACAGCAAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTGGAAAAAATAAAATAAAATAAAACCTGCTACAGCAAGGCTG  300

seq1  AGGGATAAATGCAAGGAGGGCAGAACATGGAGAGTGGCTTCCCCTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAAATGCAAGGAGGGCAGAACATGGAGAGTGGCTTCCCCTGTTGT  350

seq1  CTTTAGGGAGTTCCTTCCGCCATCTTCAAGT  381
      |||||||||||||||||||||||||||||||
seq2  CTTTAGGGAGTTCCTTCCGCCATCTTCAAGT  381

seq1: chr15_11854638_11855774
seq2: B6Ng01-143B08.g_70_1191

seq1  GAATTCCATATAGTAATCAAATACTTGATCACCCTAAATAAAATCGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATAGTAATCAAATACTTGATCACCCTAAATAAAATCGTAGA  50

seq1  GTTGTTACAAAGAAAGGAAAAATTGAAGGAATGAATAATGAGGGACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACAAAGAAAGGAAAAATTGAAGGAATGAATAATGAGGGACCAAC  100

seq1  ACCAAATGGTAGCCTTTGAGTACAGTGGTCCCTCTGTAGCCATGGTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGGTAGCCTTTGAGTACAGTGGTCCCTCTGTAGCCATGGTTACA  150

seq1  CATTCTAGTACTTAGCAAAATCCATGAAAAGTAATTTAGTGTTGTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGTACTTAGCAAAATCCATGAAAAGTAATTTAGTGTTGTCATCT  200

seq1  AAGCCACACATCCATGTGCTTTAAATAATCTCCTGATTACCTGTAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACACATCCATGTGCTTTAAATAATCTCCTGATTACCTGTAATGTA  250

seq1  TAAAAATTTAAATGCAGCTGGGCGTGGTGGGGCACGCCTTTAATCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTAAATGCAGCTGGGCGTGGTGGGGCACGCCTTTAATCCCAGC  300

seq1  ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTC  350

seq1  TACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC  400

seq1  GAAAAAACAAAACAAAACAAAAAAATTTAAATGCTATGTAAATAGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAAAACAAAACAAAAAAATTTAAATGCTATGTAAATAGGTTTA  450

seq1  CAATGTGCTGTTTAGGAAACAATAGCAAGGAAAAAGTATGTACACATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCTGTTTAGGAAACAATAGCAAGGAAAAAGTATGTACACATTCA  500

seq1  ACCTGGATGAAGTATTTTCCTGCATATATTTATCCGTAGTTCATTGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATGAAGTATTTTCCTGCATATATTTATCCGTAGTTCATTGAATC  550

seq1  CGCAAGTGCAGAAGCAGCAGTAGAGAGTGCCAGCTGTCTGTATTACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGTGCAGAAGCAGCAGTAGAGAGTGCCAGCTGTCTGTATTACAAAC  600

seq1  CACAACTTCTAGTCAGGCATAGGACTAACCTAGAAAGCTTAGACCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTCTAGTCAGGCATAGGACTAACCTAGAAAGCTTAGACCATAAA  650

seq1  CTATAGGATTAGCACATAAAATAATCCAAGCCATAATTTCTCTGAACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGATTAGCACATAAAATAATCCAAGCCATAATTTCTCTGAACAAT  700

seq1  ATCCAAGATGTCTCCATTTCCTATTTATGTGTAACAAACCACCTCAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCAAGATGTCTCCATTTCCTATTTATGTGTAACAAACCACCTCAACA-  749

seq1  TTAGTGTCTTTAAAGAGCAACAATCTATTATTTCTACTTACAAGTCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCTTTAAAGAGCAACAATCTATTATTTCTACTTACAAGTCTTCA  799

seq1  TCAGAGAAGTTCCACTGTCTATTTCTTCTGGTGGCTACTCTACGATTGCT  850
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TCAGAGAAGTTCAACTGTCTATTTCTTCTGGTGGCTACTCTACGA-TGCT  848

seq1  G-AGATGCCTAAAACCAAAGTTGGAGAGAACCTCATTTAACTGCCTGGAA  899
      | |||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GAAGATGCTTAAAACCAAAGTTGGAGAG-ACCTCATTTAACTGCCTGGAA  897

seq1  GCTAGGTCTA-GGGCTATCAACTAAGGTTTCAGAGCTCAGTGACACAGCC  948
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GCTAGGTCTAGGGGCTATCAACTAA-GTTTCAGAGCTCAGTGACACAGCC  946

seq1  TTTCCACCTGGTCACCCTGGATTTCATACAGAGTGATGACACCATTCTAG  998
      ||| | |||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTC-CCTGGTCA-CCTGGATTTCATACAGAGTGATGACACCATTCTAG  994

seq1  TAAGGCAATTTACAGGGCACAAGTGCTTCTCAAGTCTCTGGCATGCATGA  1048
      |||||| ||||||| |||||| ||||||||| ||||||||||||||||||
seq2  TAAGGC-ATTTACA-GGCACAGGTGCTTCTC-AGTCTCTGGCATGCATGA  1041

seq1  TACTTGCTGAAGTCTCATTGGCCACAATATATCACATGAACACAAGCAGG  1098
      ||| |||||||||||||||||||| | ||| ||| |||||| || |||||
seq2  TAC-TGCTGAAGTCTCATTGGCCAAATTAT-TCA-ATGAAC-CAGGCAGG  1087

seq1  AAGGTGTTAGGAACCTTATCTGGTGGAGAACATAACACA  1137
       ||||| || ||||| ||||||||||||||| |||||||
seq2  -AGGTG-TAAGAACC-TATCTGGTGGAGAAC-TAACACA  1122