BAC Information

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BAC

Clone NameB6Ng01-143P18
Chromosome15 (Build37)6 (Build37)
Map Location 29,588,564 - 29,589,66818,835,442 - 18,835,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143P18.bB6Ng01-143P18.g
ACCDH941778DH941779
length1,087889
definitionDH941778|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P18, 5' end.DH941779|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,588,564 - 29,589,668)(18,835,442 - 18,835,968)
sequence
gaattcacttattcttattaaaagtgaaacccagtgaaaagaatattcag
gtgtttgaatcaatatccttccatggaaggtacttgagtgttgaaaagaa
ctttcaaaaacagttggcatcttagaggagtcaactaatccaaacacaat
aagaccatacttcaccctaattggatgcctaactatcaacaagaagagct
gagatcctttctctatagcgtttgcaatgtgaaatggtgctcagttgtac
aaacgtggctcgatagagttgtgacacgatcctgaattacattacacatc
aagttctgtgcacaacggtttgtgattgaacatttatgctttgtgaaaat
tattcctgtactcttatcatgggctttttaaaaaaatcaaagcccaaggt
acaaatatctcaaatatatatagtggtgaatgagtcagcaaacctgtact
atccattggatggggtttatttcatataaaaaagtgatgaactgaatgag
tattcattacaacttcaaaatgttatcataaataaaagaagctcttcata
aaggagcacacatttcaccccaatatgcaagaaagtatagaagcctagga
gacatggtttactggtgagtaccgatgactggggtatcatagaaagacat
ggcagaaaggatatgcttacagtgcacagagctttctaatattaattatg
ctacaataactgtgattgccaaagtgaacatactaaaaacatgtaaatgt
atgcctcttgtggatgaaattaataccacaatgctcttgaagaggaatta
gtcactccaaagatggaggtatgagtaaactagctataacagaaacaggg
ctgtgtcttagtagggttttactgctgtgaacagacaccatgaccaaggc
aagtctataaaaacaacatttaattgtgctggctttcagttcagagttca
gtccattatcatcaagctgagcatggcagtatccagcagcatggcacacg
cagagtaagagtctacatcttcatcaaagctgctagtgagactgacttca
ggcactggggttgggagttttagcccacacccacagg
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttcaacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
ttcaatgttgatcctgcccatccatgagcatggggagatctttccatctc
tgagatcttctttaatttctttcttcagagatttggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29588564_29589668
seq2: B6Ng01-143P18.b_50_1136 (reverse)

seq1  CCTGTGGGTGTGGGCTTAAAACTCCC-ACCCCAGTTGCCTGAAAGTCAGT  49
      ||||||||||||||| |||||||||| ||||||| |||||| ||||||||
seq2  CCTGTGGGTGTGGGC-TAAAACTCCCAACCCCAG-TGCCTG-AAGTCAGT  47

seq1  CTTCCACTAGCAGCCTTTGGATGAAGATGTAGAACTCTTAACTCTGCGTG  99
      ||  ||||||||||  || ||||||||||||| |||||| ||||||||||
seq2  CT--CACTAGCAGC--TTTGATGAAGATGTAG-ACTCTT-ACTCTGCGTG  91

seq1  TGCCATGCCTGCCTGGATACTGCCATGCTCCAGCCTTGATGATAATGGAC  149
      ||||||| ||| ||||||||||||||||| ||| ||||||||||||||||
seq2  TGCCATG-CTG-CTGGATACTGCCATGCT-CAG-CTTGATGATAATGGAC  137

seq1  TGAACCTCTGAACCTGAAAGCCAGCACCAATTAAATGTTGTTTTTATAAG  199
      |||| ||||||| ||||||||||||| |||||||||||||||||||| ||
seq2  TGAA-CTCTGAA-CTGAAAGCCAGCA-CAATTAAATGTTGTTTTTAT-AG  183

seq1  ACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTACCTAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTA-CTAAGA  232

seq1  CACCAGCCCTGTTTCTGTTATAGCTAGTTTACTCATACCTCCATCTTTGG  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CAGCCCTGTTTCTGTTATAGCTAGTTTACTCATACCTCCATCTTTGG  281

seq1  AGTGACTAATTCCTCTTCAAGAGCATTGTGGTATTAATTTCATCCACAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAATTCCTCTTCAAGAGCATTGTGGTATTAATTTCATCCACAAG  331

seq1  AGGCATACATTTACATGTTTTTAGTATGTTCACTTTGGCAATCACAGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACATTTACATGTTTTTAGTATGTTCACTTTGGCAATCACAGTTA  381

seq1  TTGTAGCATAATTAATATTAGAAAGCTCTGTGCACTGTAAGCATATCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCATAATTAATATTAGAAAGCTCTGTGCACTGTAAGCATATCCTT  431

seq1  TCTGCCATGTCTTTCTATGATACCCCAGTCATCGGTACTCACCAGTAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGTCTTTCTATGATACCCCAGTCATCGGTACTCACCAGTAAAC  481

seq1  CATGTCTCCTAGGCTTCTATACTTTCTTGCATATTGGGGTGAAATGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCCTAGGCTTCTATACTTTCTTGCATATTGGGGTGAAATGTGTG  531

seq1  CTCCTTTATGAAGAGCTTCTTTTATTTATGATAACATTTTGAAGTTGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTATGAAGAGCTTCTTTTATTTATGATAACATTTTGAAGTTGTAA  581

seq1  TGAATACTCATTCAGTTCATCACTTTTTTATATGAAATAAACCCCATCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTCATTCAGTTCATCACTTTTTTATATGAAATAAACCCCATCCA  631

seq1  ATGGATAGTACAGGTTTGCTGACTCATTCACCACTATATATATTTGAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGTACAGGTTTGCTGACTCATTCACCACTATATATATTTGAGAT  681

seq1  ATTTGTACCTTGGGCTTTGATTTTTTTAAAAAGCCCATGATAAGAGTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACCTTGGGCTTTGATTTTTTTAAAAAGCCCATGATAAGAGTACA  731

seq1  GGAATAATTTTCACAAAGCATAAATGTTCAATCACAAACCGTTGTGCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAATTTTCACAAAGCATAAATGTTCAATCACAAACCGTTGTGCACA  781

seq1  GAACTTGATGTGTAATGTAATTCAGGATCGTGTCACAACTCTATCGAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGATGTGTAATGTAATTCAGGATCGTGTCACAACTCTATCGAGCC  831

seq1  ACGTTTGTACAACTGAGCACCATTTCACATTGCAAACGCTATAGAGAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTGTACAACTGAGCACCATTTCACATTGCAAACGCTATAGAGAAAG  881

seq1  GATCTCAGCTCTTCTTGTTGATAGTTAGGCATCCAATTAGGGTGAAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCTCTTCTTGTTGATAGTTAGGCATCCAATTAGGGTGAAGTAT  931

seq1  GGTCTTATTGTGTTTGGATTAGTTGACTCCTCTAAGATGCCAACTGTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATTGTGTTTGGATTAGTTGACTCCTCTAAGATGCCAACTGTTTT  981

seq1  TGAAAGTTCTTTTCAACACTCAAGTACCTTCCATGGAAGGATATTGATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTCTTTTCAACACTCAAGTACCTTCCATGGAAGGATATTGATTC  1031

seq1  AAACACCTGAATATTCTTTTCACTGGGTTTCACTTTTAATAAGAATAAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTGAATATTCTTTTCACTGGGTTTCACTTTTAATAAGAATAAGT  1081

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1087

seq1: chr6_18835442_18835968
seq2: B6Ng01-143P18.g_67_594 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| ||| |||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTTGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528