BAC Information

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BAC

Clone NameB6Ng01-144B08
Chromosome15 (Build37)
Map Location 56,165,599 - 56,290,180
singlet/doubletdoublet
Overlap genenone
Upstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B08.bB6Ng01-144B08.g
ACCDH941852DH941853
length1,1151,053
definitionDH941852|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B08, 5' end.DH941853|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,165,599 - 56,166,736)(56,289,116 - 56,290,180)
sequence
gaattctagtactaaaatggaaagaatcctcatggggtttaaactctaaa
agagtccttatggcttattgagtgaaaaattacctgggttaattaatgaa
cagttgcctcaggagttggtagcaatgtttttcatgttataaaacacttt
ggtataataaaactaaatactctcagaaatgtttgctcatagcccaggct
agtgagtacattgtaggtacagagcatctgaaaagatggggagaaataat
aatatttctatctggattctggcattttatctttcagaaaccagtcctgt
ttgtgagttaggcacatgaactattatcagataataaagggtgtttaaat
ttttgcaaaaatcacttttgctatttgaagatggcctagatcctcttgtg
actgcgttcagacgtgtgggatgaggaaagtgggtgaacagagatgtttc
tataccccacaggaagtatgttcttatgaaggctggtgctttgttgaagt
attcagtgtggtggccagtctcattttttttctcctatatttatgctggt
tttctttgaatagacatgcgaacaggaagactgcccttctgaacctcctc
tctgtcaaaggatttctagggatttccagcatgtggaggaagatcagagt
ctgtgtggagctcctgccaagtggctgaagccagagacttcccacactcc
ccagggtctcatcaattcttatcagagatgcaggggcagtggtggcaggc
agcactgtaacttcaggaaagaaggggaagaaagaggaagaaagaaacta
ttggggaacacaaatcttcctccagtgtccaggaatcagtttgtgcatag
gcaactgttaaggcaggcgactcctggctcaatggtttcccacatacaat
tatacttattctatgtacatctcattcaagcaggcagttggagctcagaa
attaaggggatatactagattcttgagctcttgacttcttcattgtcctt
aagctagtccattcattcacatttaggtgctgtatgctaaaagttcagct
ccctcgctcatttgctgagcttcttggaggctacaagcattttgaaagtt
aatgtaatgaatcag
gaattccacttctctcctcttctactgaagtttgacctagtaaaaattaa
attgtcacaggcttgtgccaagttttattgcagagaaaagaaaaactccc
aaaaaacattttctcagatagcaaatctcttcactgtgtagtacatttaa
gtaagacttctgtttttgtctcaaaacagaaatacataactcaaaatttt
gatgtgagtatgctttacaactgtatcaatttattgttgtaaaatgttag
tgtattcattttactaaataaagaatgattaaatatcccttaaaatctaa
attaaaatgtataactcattctactgttaataaaagtgtggaacaaaatc
agtaattgacatacgatgaaggagtcaattattagatttcaagcaactat
ttacaactcatctttttccttataatttctctcatttgatcatgtaagct
atttttcaaatataataactcctagataacattagacattatatagtcaa
ggaagaaaatatgttttgtttatttaaacaagttgaataaaatccgctta
gtaaataatcatgaagaattgagaatcttgagtagaatataaaaaatgat
aaaatagctttattctatattacatgtttaatgccccagattaaatattt
tctcacttacaaccatgcctgttgaatgtgaaaaaatatgttttacctat
tttccaagtgcctgaatggtaggtattgtgagaatctggaatattcttag
actagcaaaggtgaggtgcttaatctgaatgaataaaatgttcaacatgt
ggctgattgttagagaactgattttcttccctataatgtagttgtagatg
tccttggttcaggaatggatagggattttgacttggggacagtggcaaag
catgctaagtctcacagctcatttctgtaatgcatgcagatgtcattttt
ctgctcagcattatctggtactctgtttatatgagtagacgtgtacttga
tgatgattgagaattcttgtgtgatttcttttgtttatcttcagttcatt
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56165599_56166736
seq2: B6Ng01-144B08.b_46_1160

seq1  GAATTCTAGTACTAAAATGGAAAGAATCCTCATGGGGTTTAAACTCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTACTAAAATGGAAAGAATCCTCATGGGGTTTAAACTCTAAA  50

seq1  AGAGTCCTTATGGCTTATTGAGTGAAAAATTACCTGGGTTAATTAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTTATGGCTTATTGAGTGAAAAATTACCTGGGTTAATTAATGAA  100

seq1  CAGTTGCCTCAGGAGTTGGTAGCAATGTTTTTCATGTTATAAAACACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTCAGGAGTTGGTAGCAATGTTTTTCATGTTATAAAACACTTT  150

seq1  GGTATAATAAAACTAAATACTCTCAGAAATGTTTGCTCATAGCCCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATAAAACTAAATACTCTCAGAAATGTTTGCTCATAGCCCAGGCT  200

seq1  AGTGAGTACATTGTAGGTACAGAGCATCTGAAAAGATGGGGAGAAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTACATTGTAGGTACAGAGCATCTGAAAAGATGGGGAGAAATAAT  250

seq1  AATATTTCTATCTGGATTCTGGCATTTTATCTTTCAGAAACCAGTCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTATCTGGATTCTGGCATTTTATCTTTCAGAAACCAGTCCTGT  300

seq1  TTGTGAGTTAGGCACATGAACTATTATCAGATAATAAAGGGTGTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTTAGGCACATGAACTATTATCAGATAATAAAGGGTGTTTAAAT  350

seq1  TTTTGCAAAAATCACTTTTGCTATTTGAAGATGGCCTAGATCCTCTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAAAATCACTTTTGCTATTTGAAGATGGCCTAGATCCTCTTGTG  400

seq1  ACTGCGTTCAGACGTGTGGGATGAGGAAAGTGGGTGAACAGAGATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTTCAGACGTGTGGGATGAGGAAAGTGGGTGAACAGAGATGTTTC  450

seq1  TATACCCCACAGGAAGTATGTTCTTATGAAGGCTGGTGCTTTGTTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCCACAGGAAGTATGTTCTTATGAAGGCTGGTGCTTTGTTGAAGT  500

seq1  ATTCAGTGTGGTGGCCAGTCTCATTTTTTTTCTCCTATATTTATGCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTGGTGGCCAGTCTCATTTTTTTTCTCCTATATTTATGCTGGT  550

seq1  TTTCTTTGAATAGACATGCGAACAGGAAGACTGCCCTTCTGAACCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAATAGACATGCGAACAGGAAGACTGCCCTTCTGAACCTCCTC  600

seq1  TCTGTCAAAGGATTTCTAGGGATTTCCAGCATGTGGAGGAAGATCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAAGGATTTCTAGGGATTTCCAGCATGTGGAGGAAGATCAGAGT  650

seq1  CTGTGTGGAGCTCCTGCCAAGTGGCTGAAGCCAGAGACTTCCCACACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGAGCTCCTGCCAAGTGGCTGAAGCCAGAGACTTCCCACACTCC  700

seq1  CCAGGGTCTCATCAATTCTTATCAGAGATGCAGGGGCAGTGGTGGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTCATCAATTCTTATCAGAGATGCAGGGGCAGTGGTGGCAGGC  750

seq1  AGCACTGTAACTTCAGGAAAGAAGGGGAAGAAAGAGGAAGAAAGAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTAACTTCAGGAAAGAAGGGGAAGAAAGAGGAAGAAAGAAACTA  800

seq1  TTGGGGAACACAAATCTTCCTCCAGTGTCCAGGAATCAGTTTGTGCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAACACAAATCTTCCTCCAGTGTCCAGGAATCAGTTTGTGCATAG  850

seq1  GCAACTGTTAAGGCAGGCGACTCCTGGCTCAATGGTTTCCCACATACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTTAAGGCAGGCGACTCCTGGCTCAATGGTTTCCCACATACAAT  900

seq1  TATACTTATTCTATGTACATCTCATTCAAGGCAGGCAGTTGGAGCTCAGA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATACTTATTCTATGTACATCTCATTCAA-GCAGGCAGTTGGAGCTCAGA  949

seq1  AATTAAGGGGGATATACTAGATTCTTGAAGCTCTTGACCTTCCTTCATTG  1000
      |||||| |||||||||||||||||||| ||||||||||  | ||||||||
seq2  AATTAA-GGGGATATACTAGATTCTTG-AGCTCTTGAC--TTCTTCATTG  995

seq1  TCCTTAAAAGCTAGTCCCATTCATTCAACATTTTAGGTGCTTGTATGGCT  1050
      |||||  |||||||| |||||||||| ||| ||||||||| ||||| |||
seq2  TCCTT--AAGCTAGT-CCATTCATTC-ACA-TTTAGGTGC-TGTAT-GCT  1038

seq1  AACAAGGTTCAGCTCCCTCGCTCAATATGCTGAAGGCTTCTTGGAGGGCT  1100
      |  || ||||||||||||||||| || ||||||  ||||||||||||   
seq2  A--AAAGTTCAGCTCCCTCGCTC-ATTTGCTGA--GCTTCTTGGAGG--C  1081

seq1  TACAAAGCATTTTGAAGAGTTAAATGTAAATGAATCAG  1138
      ||| |||||||||||| |||| ||||| ||||||||||
seq2  TAC-AAGCATTTTGAA-AGTT-AATGT-AATGAATCAG  1115

seq1: chr15_56289116_56290180
seq2: B6Ng01-144B08.g_67_1119 (reverse)

seq1  AAAAATGAAACTGAAGATAAACAAAAGGAAATCACACAAGAA-TCTCAAT  49
      ||||||| |||||||||||||||||| ||||||||||||||| |||||||
seq2  AAAAATG-AACTGAAGATAAACAAAA-GAAATCACACAAGAATTCTCAAT  48

seq1  CATTCATCAAGTACACGTCTACTTCATTATTAAACAGAAGTACCAAGATT  99
      || ||||||||||||||||||| ||||   ||||||| |||||| ||| |
seq2  CA-TCATCAAGTACACGTCTAC-TCAT--ATAAACAG-AGTACC-AGA-T  91

seq1  AATGCTGAGCAGAAAAATGACATCCTGCATGCATTTACAGAAATGAGCTG  149
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AATGCTGAGCAGAAAAATGACAT-CTGCATGCA-TTACAGAAATGAGCTG  139

seq1  TGAGACTTAGCATGCTTTTGCCACTGTCCCCAAGTCAAAATCCCTATCCA  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGACTTAGCATGC-TTTGCCACTGTCCCCAAGTCAAAATCCCTATCCA  188

seq1  TTTCCTGAACCAAGGACATCTACAACTACATTATAGGGAAGAAAATCAGT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCCTGAACCAAGGACATCTACAACTACATTATAGGGAAGAAAATCAGT  237

seq1  TCTCTAACAATCAGCCACATGTTGAACATTTTATTCATTCAGATTAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACAATCAGCCACATGTTGAACATTTTATTCATTCAGATTAAGCA  287

seq1  CCTCACCTTTGCTAGTCTAAGAATATTCCAGATTCTCACAATACCTACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTTTGCTAGTCTAAGAATATTCCAGATTCTCACAATACCTACCA  337

seq1  TTCAGGCACTTGGAAAATAGGTAAAACATATTTTTTCACATTCAACAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCACTTGGAAAATAGGTAAAACATATTTTTTCACATTCAACAGGC  387

seq1  ATGGTTGTAAGTGAGAAAATATTTAATCTGGGGCATTAAACATGTAATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTAAGTGAGAAAATATTTAATCTGGGGCATTAAACATGTAATAT  437

seq1  AGAATAAAGCTATTTTATCATTTTTTATATTCTACTCAAGATTCTCAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGCTATTTTATCATTTTTTATATTCTACTCAAGATTCTCAATT  487

seq1  CTTCATGATTATTTACTAAGCGGATTTTATTCAACTTGTTTAAATAAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGATTATTTACTAAGCGGATTTTATTCAACTTGTTTAAATAAACA  537

seq1  AAACATATTTTCTTCCTTGACTATATAATGTCTAATGTTATCTAGGAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTTTCTTCCTTGACTATATAATGTCTAATGTTATCTAGGAGTT  587

seq1  ATTATATTTGAAAAATAGCTTACATGATCAAATGAGAGAAATTATAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGAAAAATAGCTTACATGATCAAATGAGAGAAATTATAAGGA  637

seq1  AAAAGATGAGTTGTAAATAGTTGCTTGAAATCTAATAATTGACTCCTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGAGTTGTAAATAGTTGCTTGAAATCTAATAATTGACTCCTTCA  687

seq1  TCGTATGTCAATTACTGATTTTGTTCCACACTTTTATTAACAGTAGAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATGTCAATTACTGATTTTGTTCCACACTTTTATTAACAGTAGAATG  737

seq1  AGTTATACATTTTAATTTAGATTTTAAGGGATATTTAATCATTCTTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATACATTTTAATTTAGATTTTAAGGGATATTTAATCATTCTTTATT  787

seq1  TAGTAAAATGAATACACTAACATTTTACAACAATAAATTGATACAGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATGAATACACTAACATTTTACAACAATAAATTGATACAGTTGT  837

seq1  AAAGCATACTCACATCAAAATTTTGAGTTATGTATTTCTGTTTTGAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATACTCACATCAAAATTTTGAGTTATGTATTTCTGTTTTGAGACA  887

seq1  AAAACAGAAGTCTTACTTAAATGTACTACACAGTGAAGAGATTTGCTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAGTCTTACTTAAATGTACTACACAGTGAAGAGATTTGCTATC  937

seq1  TGAGAAAATGTTTTTTGGGAGTTTTTCTTTTCTCTGCAATAAAACTTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATGTTTTTTGGGAGTTTTTCTTTTCTCTGCAATAAAACTTGGC  987

seq1  ACAAGCCTGTGACAATTTAATTTTTACTAGGTCAAACTTCAGTAGAAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTGTGACAATTTAATTTTTACTAGGTCAAACTTCAGTAGAAGAG  1037

seq1  GAGAGAAGTGGAATTC  1065
      ||||||||||||||||
seq2  GAGAGAAGTGGAATTC  1053