BAC Information

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BAC

Clone NameB6Ng01-144H14
Chromosome15 (Build37)
Map Location 102,130,523 - 102,268,921
singlet/doubletdoublet
Overlap geneEspl1, Pfdn5, Myg1, Aaas, Sp7, Sp1
Upstream geneKrt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27
Downstream geneAmhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144H14.bB6Ng01-144H14.g
ACCDH942143DH942144
length1,122967
definitionDH942143|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H14, 5' end.DH942144|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,267,797 - 102,268,921)(102,130,523 - 102,131,500)
sequence
gaattccaggcctggcagggttacacagggagaccctgtctcaaatataa
acacacatctaagagatggctgtcaataaagcactcaccacaagagcatg
aatagcagagttaaaacttctcagtatactggagatccatccgcctgcct
ctgcctccactgtggtaggattaacgatgctttggggccaccagcacctg
gcttctattttgtttgttctttatttaggatttgcaagacagagtttctc
tgtggaacctttgaactagttttttagaccaagtaggcctcaaactccta
ggtagtcctaattctccttccaaaatgctgggattaaaggtgtgtgccaa
gccaggcagtggtggcgcatgcctttaatgccagcacttgggtggaaaag
gcaggcagatttctgagttcgaggccagcctggtctacagagcaaattcc
aggacagccaggggcaacaccctgtctaggaaaacaaaacaaaacaaaca
aacaaaaaaaaattgaaggtgtgtgccatcatgtttgtgtgtctcagaac
aaggtggaagacaaatcaatctaatacccaaagtcctcttcaatgtgtac
tgtgacacatgcacacacctgcattcacatgcagtcatttacatggttgt
taaagactggcctgtaatgagaacacttaggattctgaggcaggaagatt
tccttcatttcaaggtcaacctgggctatatagaccatatatcaacaacc
accacaaaaacagggggtggggaggctgttatatagaaaccctttgtaac
ttttctacaaatcaaaaactatcttttctccctaaaagatagtattccaa
tatatgtagcttaaaatgtggctagagacacagttcattcagtaggtagt
gtgctttcctcacatgcacaatgtcgtgggtacagtgtgcttgccaactt
agcactagggaagtggcagcaaactacaagttcaagaatctcagctataa
gttgttgggagctcatcttctgctagagaaaactgataaattataaataa
taaaaaaattcccagggtgtggtgacgaggtgaacaaggaacagagaatg
actctgtgtagagacactgaat
gaattctttttttccttattatattttgcagtttgatttggtaattgttt
taaaaaatatctgtgcattgtatgcaacattacagactttatttatttat
ttattgagacagggtttctctgtatagcctttactgtcttggaactcact
ttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcc
taagtgctgggattaaaggcgtgtgcgcccacgtccggccagattttatt
tttcttagttttttttttttttttttttttttttttttttttttagctaa
agtcatactatgtagcacaaattgggctcaaacacatagcagtcctcctg
tctcagcttcccaagtctgggatcacaaattatatttcaccttttttttt
tctaaattttttaataccggttctatttatataactggctgtcctggaac
ttgcaataaaccaagcccttgagcccagatgtacaccaccacacctgact
acagctgtctattttgaggaattggcttagctggaggatgtagcccagtg
gttagagtacttgcctagtttgtgtagcatctggagtttttgttgttgtt
gttgttagtttgtttttcttaagatttatttatttattatatgtaagtgc
actgtagctgtcttcagacagcccagaagagggagtgttgtgagccacca
tgtggttgttgggatttggactcaagaccttttggaagaaaagtgctctt
agccactaagccatctctccagccctgcgtctggagtttatttagcctta
gaactggctcttcccctccacctccacaattactcactaaatttattccc
tcagaaactgcgaggcattgttttattcctgtcccactgtaccccatccc
agtttgggggaactatactgaataatgattactaaacattcacataaggt
ggaaggctggaaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102267797_102268921
seq2: B6Ng01-144H14.b_47_1168 (reverse)

seq1  ATTCAGTG-CTCTAACCACAGAGTCATTCCTCCTGCTCC-TGTTCCACTC  48
      |||||||| |||||  |||||||||||||   ||| ||| |||||  |||
seq2  ATTCAGTGTCTCTA--CACAGAGTCATTC--TCTGTTCCTTGTTCACCTC  46

seq1  GTCACCACACCTTGGGAA-TATTTTATTATTTTATTATTTTATCAG-TCT  96
      ||||||||||| |||||| | |||||||||||   || |||||||| | |
seq2  GTCACCACACCCTGGGAATTTTTTTATTATTT--ATAATTTATCAGTTTT  94

seq1  CTCTAGCAGAGGATGAGCTCCCAACACCTTATAGCTGAGGATCTTGAACT  146
      |||||||||| ||||||||||||||| ||||||||||||  |||||||||
seq2  CTCTAGCAGAAGATGAGCTCCCAACAACTTATAGCTGAGATTCTTGAACT  144

seq1  TGTAGTTTTGCTGCCACTTCCCTAGTGCTAAGTTGGCAAGCACACTGTAC  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAG-TTTGCTGCCACTTCCCTAGTGCTAAGTTGGCAAGCACACTGTAC  193

seq1  CCACGACATTGTGCATGTGAGGAAAGCACACTACCTACTGAATGAACTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGACATTGTGCATGTGAGGAAAGCACACTACCTACTGAATGAACTGT  243

seq1  GTCTCTAGCCACATTTTAAGCTACATATATTGGAATACTATCTTTTAGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAGCCACATTTTAAGCTACATATATTGGAATACTATCTTTTAGGG  293

seq1  AGAAAAGATAGTTTTTGATTTGTAGAAAAGTTACAAAGGGTTTCTATATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATAGTTTTTGATTTGTAGAAAAGTTACAAAGGGTTTCTATATA  343

seq1  ACAGCCTCCCCACCCCCTGTTTTTGTGGTGGTTGTTGATATATGGTCTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCCCACCCCCTGTTTTTGTGGTGGTTGTTGATATATGGTCTAT  393

seq1  ATAGCCCAGGTTGACCTTGAAATGAAGGAAATCTTCCTGCCTCAGAATCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAGGTTGACCTTGAAATGAAGGAAATCTTCCTGCCTCAGAATCC  443

seq1  TAAGTGTTCTCATTACAGGCCAGTCTTTAACAACCATGTAAATGACTGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTCTCATTACAGGCCAGTCTTTAACAACCATGTAAATGACTGCA  493

seq1  TGTGAATGCAGGTGTGTGCATGTGTCACAGTACACATTGAAGAGGACTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCAGGTGTGTGCATGTGTCACAGTACACATTGAAGAGGACTTT  543

seq1  GGGTATTAGATTGATTTGTCTTCCACCTTGTTCTGAGACACACAAACATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTAGATTGATTTGTCTTCCACCTTGTTCTGAGACACACAAACATG  593

seq1  ATGGCACACACCTTCAATTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACACACCTTCAATTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTC  643

seq1  CTAGACAGGGTGTTGCCCCTGGCTGTCCTGGAATTTGCTCTGTAGACCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGGTGTTGCCCCTGGCTGTCCTGGAATTTGCTCTGTAGACCAG  693

seq1  GCTGGCCTCGAACTCAGAAATCTGCCTGCCTTTTCCACCCAAGTGCTGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCGAACTCAGAAATCTGCCTGCCTTTTCCACCCAAGTGCTGGC  743

seq1  ATTAAAGGCATGCGCCACCACTGCCTGGCTTGGCACACACCTTTAATCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCATGCGCCACCACTGCCTGGCTTGGCACACACCTTTAATCCC  793

seq1  AGCATTTTGGAAGGAGAATTAGGACTACCTAGGAGTTTGAGGCCTACTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTGGAAGGAGAATTAGGACTACCTAGGAGTTTGAGGCCTACTTG  843

seq1  GTCTAAAAAACTAGTTCAAAGGTTCCACAGAGAAACTCTGTCTTGCAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAAACTAGTTCAAAGGTTCCACAGAGAAACTCTGTCTTGCAAAT  893

seq1  CCTAAATAAAGAACAAACAAAATAGAAGCCAGGTGCTGGTGGCCCCAAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATAAAGAACAAACAAAATAGAAGCCAGGTGCTGGTGGCCCCAAAG  943

seq1  CATCGTTAATCCTACCACAGTGGAGGCAGAGGCAGGCGGATGGATCTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTAATCCTACCACAGTGGAGGCAGAGGCAGGCGGATGGATCTCCA  993

seq1  GTATACTGAGAAGTTTTAACTCTGCTATTCATGCTCTTGTGGTGAGTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTGAGAAGTTTTAACTCTGCTATTCATGCTCTTGTGGTGAGTGCT  1043

seq1  TTATTGACAGCCATCTCTTAGATGTGTGTTTATATTTGAGACAGGGTCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACAGCCATCTCTTAGATGTGTGTTTATATTTGAGACAGGGTCTC  1093

seq1  CCTGTGTAACCCTGCCAGGCCTGGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  CCTGTGTAACCCTGCCAGGCCTGGAATTC  1122

seq1: chr15_102130523_102131500
seq2: B6Ng01-144H14.g_68_1034

seq1  GAATTCTTTTTTTCCTTATTATATTTTGCAGTTTGATTTGGTAATTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTCCTTATTATATTTTGCAGTTTGATTTGGTAATTGTTT  50

seq1  TAAAAAATATCTGTGCATTGTATGCAACATTACAGACTTTATTTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATCTGTGCATTGTATGCAACATTACAGACTTTATTTATTTAT  100

seq1  TTATTGAGACAGGGTTTCTCTGTATAGCCTTTACTGTCTTGGAACTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGACAGGGTTTCTCTGTATAGCCTTTACTGTCTTGGAACTCACT  150

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCC  200

seq1  TAAGTGCTGGGATTAAAGGCGTGTGCGCCCACGTCCGGCCAGATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTGGGATTAAAGGCGTGTGCGCCCACGTCCGGCCAGATTTTATT  250

seq1  TTTCTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTAA  300

seq1  AGTCATACTATGTAGCACAAATTGGGCTCAAACACATAGCAGTCCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACTATGTAGCACAAATTGGGCTCAAACACATAGCAGTCCTCCTG  350

seq1  TCTCAGCTTCCCAAGTCTGGGATCACAAATTATATTTCACCTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTCCCAAGTCTGGGATCACAAATTATATTTCACCTTTTTTTTT  400

seq1  TCTAAATTTTTTAATACCGGTTCTATTTATATAACTGGCTGTCCTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTTTTTAATACCGGTTCTATTTATATAACTGGCTGTCCTGGAAC  450

seq1  TTGCAATAGACCAAGCCCTTGAGCCCAGATGTACACCACCACACCTGACT  500
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATAAACCAAGCCCTTGAGCCCAGATGTACACCACCACACCTGACT  500

seq1  ACAGCTGTCTATTTTGAGGAATTGGCTTAGCTGGAGGATGTAGCCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTCTATTTTGAGGAATTGGCTTAGCTGGAGGATGTAGCCCAGTG  550

seq1  GTTAGAGTACTTGCCTAGTTTGTGTAGCATCTGGAGTTTTTGTTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTACTTGCCTAGTTTGTGTAGCATCTGGAGTTTTTGTTGTTGTT  600

seq1  GTTGTTAGTTTGTTTTTCTTAAGATTTATTTATTTATTATATGTAAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGTTTGTTTTTCTTAAGATTTATTTATTTATTATATGTAAGTGC  650

seq1  ACTGTAGCTGTCTTCAGACAGCCCAGAAGAGGGATGGTTGTGAGCCACCA  700
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  ACTGTAGCTGTCTTCAGACAGCCCAGAAGAGGGAGTGTTGTGAGCCACCA  700

seq1  TGTGGTTGTTGGGATTTGGACTCAGGACC-TTTGGAAGAACAGTGCTCTT  749
      |||||||||||||||||||||||| |||| |||||||||| |||||||||
seq2  TGTGGTTGTTGGGATTTGGACTCAAGACCTTTTGGAAGAAAAGTGCTCTT  750

seq1  AGCCACTAAGCCATCTCTCCAGCCCTGCGTCTGGAGTTTATTTAGCCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAAGCCATCTCTCCAGCCCTGCGTCTGGAGTTTATTTAGCCTTA  800

seq1  GAACTGCCTCTTCCCCTCCACCTCCACAAATTACTCACTAAAATTTATTC  849
      |||||| |||||||||||||||||||| ||||||||||| ||||||||||
seq2  GAACTGGCTCTTCCCCTCCACCTCCAC-AATTACTCACT-AAATTTATTC  848

seq1  ACTCAAGAAAACTGCCAGGCATTGTTATATTCCTGTCCCACTGTAACCTC  899
       ||||   ||||||| |||||||||| ||||||||||||||||| ||| |
seq2  CCTCA--GAAACTGCGAGGCATTGTTTTATTCCTGTCCCACTGT-ACCCC  895

seq1  ATCCCAGTTTGGGGGAAACATAACTGAATAAATGAATTACTAACACATTC  949
      |||||||||||||||||  || ||||||| |||| |||||||| ||||||
seq2  ATCCCAGTTTGGGGGAACTAT-ACTGAAT-AATG-ATTACTAA-ACATTC  941

seq1  ACATAAAGGTGAGAGGGCTGGAGAGGCAG  978
      |||| |||||| || ||||||| ||||||
seq2  ACAT-AAGGTG-GAAGGCTGGA-AGGCAG  967