BAC Information

Click to search

BAC

Clone NameB6Ng01-144O09
Chromosome15 (Build37)
Map Location 10,388,502 - 10,565,699
singlet/doubletdoublet
Overlap gene4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Upstream geneCapsl, Il7r, C230086A09Rik, Prlr, Agxt2
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144O09.bB6Ng01-144O09.g
ACCDH942452DH942453
length1,0941,103
definitionDH942452|Mus musculus domesticus DNA, BAC clone: B6Ng01-144O09, 5' end.DH942453|Mus musculus domesticus DNA, BAC clone: B6Ng01-144O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,388,502 - 10,389,612)(10,564,597 - 10,565,699)
sequence
gaattccattagtaaaatttccacttaaggaatattttctgaagaccaag
caaagtcttgtatgtaaaaggacttcataaattatagaaatgtaattaaa
ttagatcatttcacatttatacagtgctgtatacttttcaaagtacatac
tacttgactcattaataaaccatttatactcaaaccattttggaaaaaaa
gatgtcatctgagttacttgtcagaaaatctacagtttataaataagtag
aagtaggaactctattcagatcagtgttgtgggtggaagagctagtaatc
atgagaaaatcgggattactggtcagcagttctctgtatcccaggctgtc
ctggagctcactctgtagaccaggctggcctcgaactcagaaatccgcct
gcctctgcctcccaagtgctgggattaaaggcgtgtgccaccacgcccgg
cctggtcagcagttctcaaaggcctcaacctaacgtgttaaacacataca
cactcagtgtctgcactctgacaatgtaggtaaagcaccttccggaagcc
ctaagtgggaggaatggcacatatgacacactcactcctatgcaacaact
actgtctttttttttttttaagatttatttattatacataagtacactgt
agctgacttcagtcgtaccaaaagagggcatcagatctcattacgggtgg
tggtgagccaccatgtgggtgctgggatttgaactcaggaccttcagaag
agcagtcagtgctcttacccactgagccatcttgccagcccccaacaact
actgtcttaaaagagatattatgtgtgcaggacatggcggtgcacgcctc
taatcccaggactctcagaggcagaaacaggcagatcccctgagtctgag
ccaactggtctgaggacctagtttcaggacagcaggctatacaagaaaac
ctatctggaaaacaacagcaacaaaatgcttaacaaatgttctttgatgc
ccatagactccaattctagttcagtctaaaaaacaggactgtgcatgtac
ggtaagtactgtcgatgctctcttgatttcatcctcctcttctg
gaattccttgtggaggacgaaattgcttcaaattctctagccagccttga
cataagattctgactgtccctgaatgggatcggtgagagtagttgttgga
cctaaacaattcctgggaaccaccttaaatgctgggccagaatctttaga
atggaaccagcagtcgacagactcaaccagcacctgggtggttctcatga
gggagacactgggctcacctcgagtgaatttatgaggtttggcatcttag
tcatgaagaaatttggggaaagtatacacaattaaaaatcttggaaagcc
ggccttcttgtggaaaagctaaggaagtcggattcatccaggccgtaaat
gtatttttaaaaagaccgaaacatgatttaattgtttgcaagagaatgaa
agaattttattatgacagcgcaaacatttgctaagtcaagagagatttag
attagtcaggagggggcgcatactgagcgttccgcaggctccagggatgt
aagaaacaaaggctgcagctcagagtcttcagggaacaagccagacaccc
cctccccagccaaagcaggatgccatacttcatctcgtctagacagtagg
cctcagtgagctgagtaggtggccccagaggacacagcagagcagagatg
cagagagagaggtcagcgggaaggtcctgagagcctgcggggccctggtc
agctttagaagttggcctgcatgtaagtggtggttgacaggagtgttcta
aagcaggggcttccgttgtttttcttgtaatttccagtaagaaggacttg
tgaccggagccccgtgtgcgcctttaacactaagccaggcattggatctg
ttaaacctgagtgcctgcctgctgctgtctcttctgttaatggtggaggg
acagaagatttagggtcatagctcgggattagcttctagattgctaaggc
aatggcctcaggatgcttctcacgcatgcccatgctgtgcctggcggaag
ggagagtatgggaggcacctattgaataaggaggggcttctgagccagag
tgaactgttagaaaaagttaagggcacttttccagctctgcctccagttt
gct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10388502_10389612
seq2: B6Ng01-144O09.b_49_1142

seq1  GAATTCCATTAGTAAAATTTCCACTTAAGGAATATTTTCTGAAGACCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGTAAAATTTCCACTTAAGGAATATTTTCTGAAGACCAAG  50

seq1  CAAAGTCTTGTATGTAAAAGGACTTCATAAATTATAGAAATGTAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTTGTATGTAAAAGGACTTCATAAATTATAGAAATGTAATTAAA  100

seq1  TTAGATCATTTCACATTTATACAGTGCTGTATACTTTTCAAAGTACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCATTTCACATTTATACAGTGCTGTATACTTTTCAAAGTACATAC  150

seq1  TACTTGACTCATTAATAAACCATTTATACTCAAACCATTTTGGAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACTCATTAATAAACCATTTATACTCAAACCATTTTGGAAAAAAA  200

seq1  GATGTCATCTGAGTTACTTGTCAGAAAATCTACAGTTTATAAATAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATCTGAGTTACTTGTCAGAAAATCTACAGTTTATAAATAAGTAG  250

seq1  AAGTAGGAACTCTATTCAGATCAGTGTTGTGGGTGGAAGAGCTAGTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAACTCTATTCAGATCAGTGTTGTGGGTGGAAGAGCTAGTAATC  300

seq1  ATGAGAAAATCGGGATTACTGGTCAGCAGTTCTCTGTATCCCAGGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAATCGGGATTACTGGTCAGCAGTTCTCTGTATCCCAGGCTGTC  350

seq1  CTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCT  400

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGG  450

seq1  CCTGGTCAGCAGTTCTCAAAGGCCTCAACCTAACGTGTTAAACACATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAGCAGTTCTCAAAGGCCTCAACCTAACGTGTTAAACACATACA  500

seq1  CACTCAGTGTCTGCACTCTGACAATGTAGGTAAAGCACCTTCCGGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTGTCTGCACTCTGACAATGTAGGTAAAGCACCTTCCGGAAGCC  550

seq1  CTAAGTGGGAGGAATGGCACATATGACACACTCACTCCTATGCAACAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGGAGGAATGGCACATATGACACACTCACTCCTATGCAACAACT  600

seq1  ACTGTCTTTTTTTTTTTTTAAGATTTATTTATTATACATAAGTACACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTTTTTTTTTTTAAGATTTATTTATTATACATAAGTACACTGT  650

seq1  AGCTGACTTCAGTCGTACCAAAAGAGGGCATCAGATCTCATTACGGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTTCAGTCGTACCAAAAGAGGGCATCAGATCTCATTACGGGTGG  700

seq1  TGGTGAGCCACCATGTGGGTGCTGGGATTTGAACTCAGGACCTTCAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCCACCATGTGGGTGCTGGGATTTGAACTCAGGACCTTCAGAAG  750

seq1  AGCAGTCAGTGCTCTTACCCACTGAGCCATCTTGCCAGCCCCCAACAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGCTCTTACCCACTGAGCCATCTTGCCAGCCCCCAACAACT  800

seq1  ACTGTCTTAAAAGAGATATTAAGGTGTGCAGGACATGGCGGTGCACGCCT  850
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  ACTGTCTTAAAAGAGATATT-ATGTGTGCAGGACATGGCGGTGCACGCCT  849

seq1  CTAATCCCAGGACTC-CAGAGGCAGAAACAGGCAGAT-CCCTGAGTCTGA  898
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  CTAATCCCAGGACTCTCAGAGGCAGAAACAGGCAGATCCCCTGAGTCTGA  899

seq1  GGCCAACTGGTCTGAGGACCTAGTTCCAGGACAGCCAGGGCTATACAAGA  948
       |||||||||||||||||||||||| |||||||||   ||||||||||| 
seq2  -GCCAACTGGTCTGAGGACCTAGTTTCAGGACAGC--AGGCTATACAAG-  945

seq1  AAAACCTATCTGGAAAAACAAACAGCAAACAAAATGCTTAACAAAATGTT  998
      |||||||||||||||||   |||||| ||||||||||||||| |||||||
seq2  AAAACCTATCTGGAAAA--CAACAGC-AACAAAATGCTTAAC-AAATGTT  991

seq1  CTTTGATTGCCCATTAGAACTCCCAATTTCTAGTTCAGTCTAGAAAACAG  1048
      |||||| |||||| ||| |||||  | ||||||||||||||| |||||||
seq2  CTTTGA-TGCCCA-TAG-ACTCC--AATTCTAGTTCAGTCTAAAAAACAG  1036

seq1  GACTGTGGCCATGTACGGTGAAGTACAAGTCAGATGCTCTCTGGATTTTC  1098
      |||||||  |||||||||| ||||||  ||| |||||||||| || ||||
seq2  GACTGTG--CATGTACGGT-AAGTAC-TGTC-GATGCTCTCTTGA-TTTC  1080

seq1  AT-CTCCTCTTCTG  1111
      || |||||||||||
seq2  ATCCTCCTCTTCTG  1094

seq1: chr15_10564597_10565699
seq2: B6Ng01-144O09.g_69_1171 (reverse)

seq1  AGCAAACTGGAAGGCAGAGCTGGAAAAGTGCCCCTGACTTTTTTCTACAG  50
      |||||||||| |||||||||||||||||||||| | |||||||   ||||
seq2  AGCAAACTGG-AGGCAGAGCTGGAAAAGTGCCCTTAACTTTTTCTAACAG  49

seq1  TTCA-TCTTGCTCAGGAAGCCCCTCCTTATTC-ATAGGTGCCT-CCATAC  97
      |||| ||| ||||| ||||||||||||||||| |||||||||| ||||||
seq2  TTCACTCTGGCTCA-GAAGCCCCTCCTTATTCAATAGGTGCCTCCCATAC  98

seq1  TCTCCC-TCCGCCAGGCACAGCATGGGGCATGCGTGAGAAGCATCCTGAG  146
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTCCCTTCCGCCAGGCACAGCAT-GGGCATGCGTGAGAAGCATCCTGAG  147

seq1  GCCATTGCCCTTAGCAATCTAGAAGCTAATCCCGAGCTATGACCCTAAAT  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTG-CCTTAGCAATCTAGAAGCTAATCCCGAGCTATGACCCTAAAT  196

seq1  CTTCTGTCCCTCCACCATTAACAGAAGAGACAGCAGCAGGCAGGCACTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCCCTCCACCATTAACAGAAGAGACAGCAGCAGGCAGGCACTCA  246

seq1  GGTTTAACAGATCCAATGCCTGGCTTAGTGTTAAAGGCGCACACGGGGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAACAGATCCAATGCCTGGCTTAGTGTTAAAGGCGCACACGGGGCT  296

seq1  CCGGTCACAAGTCCTTCTTACTGGAAATTACAAGAAAAACAACGGAAGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCACAAGTCCTTCTTACTGGAAATTACAAGAAAAACAACGGAAGCC  346

seq1  CCTGCTTTAGAACACTCCTGTCAACCACCACTTACATGCAGGCCAACTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTAGAACACTCCTGTCAACCACCACTTACATGCAGGCCAACTTC  396

seq1  TAAAGCTGACCAGGGCCCCGCAGGCTCTCAGGACCTTCCCGCTGACCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGACCAGGGCCCCGCAGGCTCTCAGGACCTTCCCGCTGACCTCT  446

seq1  CTCTCTGCATCTCTGCTCTGCTGTGTCCTCTGGGGCCACCTACTCAGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCATCTCTGCTCTGCTGTGTCCTCTGGGGCCACCTACTCAGCTC  496

seq1  ACTGAGGCCTACTGTCTAGACGAGATGAAGTATGGCATCCTGCTTTGGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCCTACTGTCTAGACGAGATGAAGTATGGCATCCTGCTTTGGCT  546

seq1  GGGGAGGGGGTGTCTGGCTTGTTCCCTGAAGACTCTGAGCTGCAGCCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGGTGTCTGGCTTGTTCCCTGAAGACTCTGAGCTGCAGCCTTT  596

seq1  GTTTCTTACATCCCTGGAGCCTGCGGAACGCTCAGTATGCGCCCCCTCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTACATCCCTGGAGCCTGCGGAACGCTCAGTATGCGCCCCCTCCT  646

seq1  GACTAATCTAAATCTCTCTTGACTTAGCAAATGTTTGCGCTGTCATAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATCTAAATCTCTCTTGACTTAGCAAATGTTTGCGCTGTCATAATA  696

seq1  AAATTCTTTCATTCTCTTGCAAACAATTAAATCATGTTTCGGTCTTTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTCATTCTCTTGCAAACAATTAAATCATGTTTCGGTCTTTTTA  746

seq1  AAAATACATTTACGGCCTGGATGAATCCGACTTCCTTAGCTTTTCCACAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATTTACGGCCTGGATGAATCCGACTTCCTTAGCTTTTCCACAA  796

seq1  GAAGGCCGGCTTTCCAAGATTTTTAATTGTGTATACTTTCCCCAAATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCGGCTTTCCAAGATTTTTAATTGTGTATACTTTCCCCAAATTTC  846

seq1  TTCATGACTAAGATGCCAAACCTCATAAATTCACTCGAGGTGAGCCCAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTAAGATGCCAAACCTCATAAATTCACTCGAGGTGAGCCCAGT  896

seq1  GTCTCCCTCATGAGAACCACCCAGGTGCTGGTTGAGTCTGTCGACTGCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTCATGAGAACCACCCAGGTGCTGGTTGAGTCTGTCGACTGCTG  946

seq1  GTTCCATTCTAAAGATTCTGGCCCAGCATTTAAGGTGGTTCCCAGGAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTCTAAAGATTCTGGCCCAGCATTTAAGGTGGTTCCCAGGAATT  996

seq1  GTTTAGGTCCAACAACTACTCTCACCGATCCCATTCAGGGACAGTCAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTCCAACAACTACTCTCACCGATCCCATTCAGGGACAGTCAGAA  1046

seq1  TCTTATGTCAAGGCTGGCTAGAGAATTTGAAGCAATTTCGTCCTCCACAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTCAAGGCTGGCTAGAGAATTTGAAGCAATTTCGTCCTCCACAA  1096

seq1  GGAATTC  1103
      |||||||
seq2  GGAATTC  1103