BAC Information

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BAC

Clone NameB6Ng01-146A07
Chromosome15 (Build37)
Map Location 100,753,528 - 100,943,511
singlet/doubletdoublet
Overlap geneScn8a, EG668225
Upstream gene1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
Downstream geneAnkrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A07.bB6Ng01-146A07.g
ACCDH943268DH943269
length1,1581,070
definitionDH943268|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A07, 5' end.DH943269|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,753,528 - 100,754,705)(100,942,429 - 100,943,511)
sequence
gaattccagaggcagatgtcaaggcttcttcagggagatgtgcattttta
ggtatcccggagtaactgtcttaaaaggatcagagcagaccagctgttgc
gaataaggggcacttgatgagccctggggaaatggtgtgaggcggaggag
gaggaacaagctttagtagtgggctcaccgggtaggaaggaagccagtgt
gcacagtgctcctggcgaagatggccttccagcctggtagagaatccagc
atttatggagaggctttaagggggaaaaaaagtttaaaatgattaaaatt
aagtgctgacaaaattgtttcgtttcagttctagaactgttaaatatctc
caaaaatgaaatctgtaagacagaaagaaaattggcatgctcacatctag
ttgtcactggaaggaggaggagcccagggagcggggacagtgtaaaccgt
ccatctggccgcgtttctttctcctacgcgaggagccgcccaccttcctc
ccatgcggggccactcctctggctgattccatgagctcacagcagatgca
cagagctggctcaccgacaggcctgaatacagcttcggttctcctgcgac
catttgtctccctttggttctagctaaacctcatctgagcttcagaacca
cgtggctggctgcctgtctggcatccccgttaggatgcgtcaaagcgcct
cagcctaggcctgttcaaagcgaagccgttttagctccagagctgtatgt
cacgtcacattcctgtcaccgagtttcactacctcctacccatttgccca
tgacagaaagtggggcgtttttcctagtctcctgccttcgtaccctcagt
cagctggcctgctcaacatgccatccgactggtgctacctggtccaggct
gtcaccgtctctacctgactagcacacagcttctgcctggctcacttcta
acctgtcctgctcccttcatgtgttaggattatgttgggacctcagatat
tgtctaacaaagctccgtaaactttgtttcacgcttcacttgtgctgaat
gaagaggcctgaaaatatatgtccttacccacagaaaggataagcctcca
cccctcatcaaagacctcttgcaccattggagacatgaacagaaaaacca
ccgtcaaa
gaattctatgcagtaggtagaaaatatctatgacgttataggccagacat
ctctgatcatttacagacaccctatctacagctttctttttctctagtca
ccttagagctagctgctgtatggaatcccagtggatgagcacaggtgtgt
gcacacaggtgcatgtgcacaggtggatgcacacaggtgggtgcacacag
gtggatagacataggcatgtgcacacaggtgtgtgcacacaagtgaatgc
acacaggtgtgtgcacacaagtgaatgcacacaggtgtgtgcacacaagt
gaatgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtgtgcat
ccacatttagctttcccattcttccagaggtgcataagcgcaggtgtgtc
cacgcaggtggatgagcacaggtgtgtgcatccaccacatttaacgttcc
cattcttccaggggtgaatgtaccttaaggaacagtttattttgtctcac
agctctagggttcaatctaccacaaccgagaggttatggaagcaggagaa
tgaggcagcctgctctacagagagagttctgggacagccagggctacaca
gagaaactgtgtctcaaaaaaaaaaagtaagagaaagaaaggaagaaagt
gagcaaggatacaccacactagtcaggatgtgagaaagaggagctcttat
tccctgctggcaggaatgcaaattggtagccataatggtaaggattattc
gagttcctccaaaggaaaaggaaagctgtcccaccggccagccattccac
tcctgagcacatgctgcagttcagcatgcccaggcacccatgcttcctgg
aacaccgttcacaacatcctagatagggagccagaccagatgctcatcaa
cagactagtggatgagaaagtgttgttcgtgttatgcaaggagcgttacc
tggccctttagatgaagtctgtgaattgggggaatatggaatgtaacaga
caatcacattagtgtataacccaattagaaaatcagggattttttctaaa
gtgggaattatattcaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100753528_100754705
seq2: B6Ng01-146A07.b_48_1205

seq1  GAATTCCAGAGGCAGATGTCAAGGCTTCTTCAGGGAGATGTGCATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGCAGATGTCAAGGCTTCTTCAGGGAGATGTGCATTTTTA  50

seq1  GGTATCCCGGAGTAACTGTCTTAAAAGGATCAGAGCAGACCAGCTGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCCGGAGTAACTGTCTTAAAAGGATCAGAGCAGACCAGCTGTTGC  100

seq1  GAATAAGGGGCACTTGATGAGCCCTGGGGAAATGGTGTGAGGCGGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGGGCACTTGATGAGCCCTGGGGAAATGGTGTGAGGCGGAGGAG  150

seq1  GAGGAACAAGCTTTAGTAGTGGGCTCACCGGGTAGGAAGGAAGCCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAAGCTTTAGTAGTGGGCTCACCGGGTAGGAAGGAAGCCAGTGT  200

seq1  GCACAGTGCTCCTGGCGAAGATGGCCTTCCAGCCTGGTAGAGAATCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGCTCCTGGCGAAGATGGCCTTCCAGCCTGGTAGAGAATCCAGC  250

seq1  ATTTATGGAGAGGCTTTAAGGGGGAAAAAAAGTTTAAAATGATTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGAGAGGCTTTAAGGGGGAAAAAAAGTTTAAAATGATTAAAATT  300

seq1  AAGTGCTGACAAAATTGTTTCGTTTCAGTTCTAGAACTGTTAAATATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGACAAAATTGTTTCGTTTCAGTTCTAGAACTGTTAAATATCTC  350

seq1  CAAAAATGAAATCTGTAAGACAGAAAGAAAATTGGCATGCTCACATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGAAATCTGTAAGACAGAAAGAAAATTGGCATGCTCACATCTAG  400

seq1  TTGTCACTGGAAGGAGGAGGAGCCCAGGGAGCGGGGACAGTGTAAACCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTGGAAGGAGGAGGAGCCCAGGGAGCGGGGACAGTGTAAACCGT  450

seq1  CCATCTGGCCGCGTTTCTTTCTCCTACGCGAGGAGCCGCCCACCTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGCCGCGTTTCTTTCTCCTACGCGAGGAGCCGCCCACCTTCCTC  500

seq1  CCATGCGGGGCCACTCCTCTGGCTGATTCCATGAGCTCACAGCAGATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGGGGCCACTCCTCTGGCTGATTCCATGAGCTCACAGCAGATGCA  550

seq1  CAGAGCTGGCTCACCGACAGGCCTGAATACAGCTTCGGTTCTCCTGCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGCTCACCGACAGGCCTGAATACAGCTTCGGTTCTCCTGCGAC  600

seq1  CATTTGTCTCCCTTTGGTTCTAGCTAAACCTCATCTGAGCTTCAGAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTCCCTTTGGTTCTAGCTAAACCTCATCTGAGCTTCAGAACCA  650

seq1  CGTGGCTGGCTGCCTGTCTGGCATCCCCGTTAGGATGCGTCAAAGCGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTGGCTGCCTGTCTGGCATCCCCGTTAGGATGCGTCAAAGCGCCT  700

seq1  CAGCCTAGGCCTGTTCAAAGCGAAGCCGTTTTAGCTCCAGAGCTGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGCCTGTTCAAAGCGAAGCCGTTTTAGCTCCAGAGCTGTATGT  750

seq1  CACGTCACATTCCTGTCACCGAGTTTCACTACCTCCTACCCATTTGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCACATTCCTGTCACCGAGTTTCACTACCTCCTACCCATTTGCCCA  800

seq1  TGACAGAAAGTGGGGCGTTTTTCCTAGTCTCCTGCCTTCGTACCCTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAAGTGGGGCGTTTTTCCTAGTCTCCTGCCTTCGTACCCTCAGT  850

seq1  CAGCTGGCCTGCTCAACATGCCATCCGACTGGTGCTACCTGGTCCAGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCCTGCTCAACATGCCATCCGACTGGTGCTACCTGGTCCAGGCT  900

seq1  GTCACCGTCTCTACCTGACTAGCCACACAGCTTCTGCCTGGCTCACCTCT  950
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GTCACCGTCTCTACCTGACTAG-CACACAGCTTCTGCCTGGCTCACTTCT  949

seq1  AACCTTGTTCCTGCTCCCTTCATGTAGTCTAGGTATTATTGTTGGGAACT  1000
      |||||   ||||||||||||||||| || |||| |||| |||||||| ||
seq2  AACCT--GTCCTGCTCCCTTCATGT-GT-TAGG-ATTA-TGTTGGGACCT  993

seq1  CAGATATTGTCTAAACAAAGCTCGTTAAACTTTGTGTCACGGCTTCACTT  1050
      |||||||||||| ||||||||||  |||||||||| |||| |||||||||
seq2  CAGATATTGTCT-AACAAAGCTCCGTAAACTTTGTTTCAC-GCTTCACTT  1041

seq1  GTGGCTGAATGAGGAGGCCCTGAAAAAATATTTGTCCTTACACCCACAGA  1100
      || ||||||||| |||| ||||  ||||||| |||||||  |||||||||
seq2  GT-GCTGAATGAAGAGG-CCTG--AAAATATATGTCCTT--ACCCACAGA  1085

seq1  GAAGTATAGTCCT-CACCCCTCATCAAAGAAACTTCTTGCAACAGATGGA  1149
       ||| |||  ||| |||||||||||||||  || ||||||| ||  ||||
seq2  -AAGGATAAGCCTCCACCCCTCATCAAAG--ACCTCTTGCACCA-TTGGA  1131

seq1  GACCATG-ACAGAAAACCACACCAGTCAAA  1178
      || |||| |||||||| | |||| ||||||
seq2  GA-CATGAACAGAAAAAC-CACC-GTCAAA  1158

seq1: chr15_100942429_100943511
seq2: B6Ng01-146A07.g_69_1138 (reverse)

seq1  CAGTTGAATATAGATTCCACATTTAAGAAAAAAATCACTTGATATTTTCT  50
      |||||||||||| ||||| || || || |||||||| ||    |||||||
seq2  CAGTTGAATATA-ATTCC-CACTTTAG-AAAAAATCCCT---GATTTTCT  44

seq1  AATCTGGGTTATTACACTTAATGTGATTGTCTTGTTTACATCCATTATTC  100
      ||| ||||||| ||||| ||||||||||||||   |||||| |  |||||
seq2  AAT-TGGGTTA-TACAC-TAATGTGATTGTCT--GTTACATTCCATATTC  89

seq1  CCCCAAATCACATGACTTCATTCTAAATGGCCAGGTAACGCTCCCTTGCA  150
      |||||| ||||| ||||||| |||||| |||||||||||||| |||||||
seq2  CCCCAATTCACA-GACTTCA-TCTAAAGGGCCAGGTAACGCT-CCTTGCA  136

seq1  T-ACACGGACCACACTTTCTTCATCCACTCGTCTGTTGATGAGCATCTGG  199
      | ||||| || |||||||| ||||||||| ||||||||||||||||||||
seq2  TAACACGAACAACACTTTC-TCATCCACTAGTCTGTTGATGAGCATCTGG  185

seq1  TCTGGCTCCCTATCTAGGCTGTTGTGAACGGTGTTCCAGGAAGCATGGGT  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGGCTCCCTATCTAGGATGTTGTGAACGGTGTTCCAGGAAGCATGGGT  235

seq1  GCCTGGGCATGCTG-ACTGCAGCATGTGCTCAGGAGTGGAATGGCTGGCC  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCATGCTGAACTGCAGCATGTGCTCAGGAGTGGAATGGCTGGCC  285

seq1  GGTGGGACAGCTTTCCTTTTCCTTTGGAGGAACTCGAATAATCCTTACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACAGCTTTCCTTTTCCTTTGGAGGAACTCGAATAATCCTTACCA  335

seq1  TTATGGCTACCAATTTGCATTCCTGCCAGCAGGGAATAAGAGCTCCTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTACCAATTTGCATTCCTGCCAGCAGGGAATAAGAGCTCCTCTT  385

seq1  TCTCACATCCTGACTAGTGTGGTGTATCCTTGCTCACTTTCTTCCTTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATCCTGACTAGTGTGGTGTATCCTTGCTCACTTTCTTCCTTTCT  435

seq1  TTCTCTTACTTTTTTTTTTTGAGACACAGTTTCTCTGTGTAGCCCTGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTACTTTTTTTTTTTGAGACACAGTTTCTCTGTGTAGCCCTGGCT  485

seq1  GTCCCAGAACTCTCTCTGTAGAGCAGGCTGCCTCATTCTCCTGCTTCCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAACTCTCTCTGTAGAGCAGGCTGCCTCATTCTCCTGCTTCCAT  535

seq1  AACCTCTCGGTTGTGGTAGATTGAACCCTAGAGCTGTGAGACAAAATAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCGGTTGTGGTAGATTGAACCCTAGAGCTGTGAGACAAAATAAA  585

seq1  CTGTTCCTTAAGGTACATTCACCCCTGGAAGAATGGGAACGTTAAATGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTTAAGGTACATTCACCCCTGGAAGAATGGGAACGTTAAATGTG  635

seq1  GTGGATGCACACACCTGTGCTCATCCACCTGCGTGGACACACCTGCGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCACACACCTGTGCTCATCCACCTGCGTGGACACACCTGCGCTT  685

seq1  ATGCACCTCTGGAAGAATGGGAAAGCTAAATGTGGATGCACACACCTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTCTGGAAGAATGGGAAAGCTAAATGTGGATGCACACACCTGTG  735

seq1  TGCATTCACTTGTGTGCACACACCTGTGTGCATTCACTTGTGTGCACACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCACTTGTGTGCACACACCTGTGTGCATTCACTTGTGTGCACACA  785

seq1  CCTGTGTGCATTCACTTGTGTGCACACACCTGTGTGCATTCACTTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGCATTCACTTGTGTGCACACACCTGTGTGCATTCACTTGTGTG  835

seq1  CACACACCTGTGTGCACATGCCTATGTCTATCCACCTGTGTGCACCCACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTGTGTGCACATGCCTATGTCTATCCACCTGTGTGCACCCACC  885

seq1  TGTGTGCATCCACCTGTGCACATGCACCTGTGTGCACACACCTGTGCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATCCACCTGTGCACATGCACCTGTGTGCACACACCTGTGCTCA  935

seq1  TCCACTGGGATTCCATACAGCAGCTAGCTCTAAGGTGACTAGAGAAAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGGATTCCATACAGCAGCTAGCTCTAAGGTGACTAGAGAAAAAG  985

seq1  AAAGCTGTAGATAGGGTGTCTGTAAATGATCAGAGATGTCTGGCCTATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTAGATAGGGTGTCTGTAAATGATCAGAGATGTCTGGCCTATAA  1035

seq1  CGTCATAGATATTTTCTACCTACTGCATAGAATTC  1083
      |||||||||||||||||||||||||||||||||||
seq2  CGTCATAGATATTTTCTACCTACTGCATAGAATTC  1070