BAC Information

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BAC

Clone NameB6Ng01-147I16
Chromosome15 (Build37)
Map Location 89,332,232 - 89,517,646
singlet/doubletdoublet
Overlap geneShank3, Acr, Rabl2a
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa
Downstream geneLOC676575, Syt10, Alg10b, Cpne8, EG627342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147I16.bB6Ng01-147I16.g
ACCDH944393DH944394
length1,125966
definitionDH944393|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I16, 5' end.DH944394|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,516,508 - 89,517,646)(89,332,232 - 89,333,488)
sequence
gaattctaagaaattctgtttttctattttattgagagccctacaaaaaa
ctaatatcatatctcaaataggattatttatggtcctatcagcagacaga
ttagttgaataaatcccctcctctgttcccctcaaaccctaggattttac
tttttataatatgatttagaggcatgtggtgggacaaaattgatttctgg
aaaagtgtgtatctccaaagaaccatattttatagctttgtacacaattt
tattgatgctctaatcttgaaatcttgtggagatggctcacttgtaataa
aaaatcctttactgctctacctgttagcttggaaagatcaacatttctgt
cctgtttaaagctcataattcactgtaattctaaatccaacactgtacca
atcaagttaaccattagagcacctgacaatagtaatgtacatttgcaata
taactctaccatacaatatttgaaaacgctttccttatatgtagtgtgac
attttaaatttttctcatattagcatattttattcacaataattataaat
cataatagagaaagataagagagctagatcttccctttgaagatctcaga
tacgttcccaacattctgaaatataattatcccagtatggaaaatgaaaa
agtgaagtgaaaaagattaacaacatcaatccataaataggaggtgattt
caaatacccactttctccaatagacaggtcatctggacaaagaacaaaca
gaaatatcagaatcaattggcatcacacatcaaatggacataatagatat
ctacagactattttatccaaacaccaaagaatacacattttactcatcag
cacatggacattgttctaaaagcaatcacatcctgagacaaaacataagt
ctttactaattcaaaagtattgaagctactctgtgtatcctatctggcca
aatgcataaaacttcaaaacctcctaataatatataaactcatgaatatt
aaacaaccaattactgatgatgatgagttgaggaaaaaaagtctttcctg
gactaagttaataggacactacacataccttctgaagaccagtgatgcag
tctataaggaaattatagcctctaa
gaattctcttccaggagggatttgctacacattttacaggtgaggcagag
ggcttgagtcacctgctgtgactgcccggtgaagctggctcagatctgtc
tgactaggtaggccctgtggcctgggtacacttaacctgtatagtgtctt
tgcatctgggacctactcccagatatagagtatagggcctgactctattc
actttctttttgagggggtactaaacccctcctgggtgtccagggggcaa
ggtgggtgtcacagcccctttccaactcccccagttctgtggatcaatgg
gaatttgttcatgggatactttcttgatgggctctggagtatagggaaag
gtctttgtgaccccatctgtggtcctagatccttacgcttacttgaaaga
ctttcctgctgccccaggacaggtgacagtcaatggccatggctatatgc
tgggtagagaccatgtcagagaggtctttgtctctccctccaccagccct
tgtgtgaccctggcaccctgggttctccagctcttttctcaggtgcccgt
aagacatgagagccacttgcctttcagaaagtcatttggttttaggatgg
acctggacttctgactgcagccctgtcccctggcttgcctggggtccggc
tatccctagctctctctgttaccttggggctggctaaggtcttcctagag
gatttgcatagcttcttgtagggtttgagcaccctgacccatgatgctgg
tccatgaggcacccttttctgtctgtggtataagctgcttgtgaatgcct
gggctgggactccttgccctgtgtggctggcacctgtaccaccagacaag
gccagtcagtgaaacttttgccgggttgaaggactggaaagcaaagtcat
gtcatagtgttgccaggggtgtacatgggatgtaggaggagctagtaaga
tggggttggaggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89516508_89517646
seq2: B6Ng01-147I16.b_50_1174 (reverse)

seq1  TTAGA-GCTATAAATTTCCCTTATAGAACTGCATTCACTGTGTC-TCAGA  48
      ||||| |||||||  || |||||||| |||||| |||||| ||| |||||
seq2  TTAGAGGCTATAA--TTTCCTTATAG-ACTGCA-TCACTG-GTCTTCAGA  45

seq1  GGTTTTGTTGTGTTGTGTTCTTATTTTAACTTAGTTCCAGG-AAGACTTT  97
       | |    ||||| |||| |   | ||||||||| |||||| ||||| ||
seq2  AGGT---ATGTGTAGTGTCC---TATTAACTTAG-TCCAGGAAAGAC-TT  87

seq1  TTTTTCCTCAACTCATTCATCATCAGTAATTGGTTGTTTAATATTCATGA  147
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCAACTCA-TCATCATCAGTAATTGGTTGTTTAATATTCATGA  136

seq1  GTTTATATATTATTAGGAGGTTTTTGAAGTTTTATTGCATTTTGGCCAGA  197
      |||||||||||||||||||| ||||||||||||| |||| ||||||||||
seq2  GTTTATATATTATTAGGAGG-TTTTGAAGTTTTA-TGCA-TTTGGCCAGA  183

seq1  TAGGATACACAGAGTAGCTTCAATACTTTTGAATTAGTAAAGACTTATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACACAGAGTAGCTTCAATACTTTTGAATTAGTAAAGACTTATGT  233

seq1  TTTGTCTCAGGATGTGATTGCTTTTAGAACAATGTCCATGTGCTGATGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAGGATGTGATTGCTTTTAGAACAATGTCCATGTGCTGATGAG  283

seq1  TAAAATGTGTATTCTTTGGTGTTTGGATAAAATAGTCTGTAGATATCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGTATTCTTTGGTGTTTGGATAAAATAGTCTGTAGATATCTAT  333

seq1  TATGTCCATTTGATGTGTGATGCCAATTGATTCTGATATTTCTGTTTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCATTTGATGTGTGATGCCAATTGATTCTGATATTTCTGTTTGTT  383

seq1  CTTTGTCCAGATGACCTGTCTATTGGAGAAAGTGGGTATTTGAAATCACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCAGATGACCTGTCTATTGGAGAAAGTGGGTATTTGAAATCACC  433

seq1  TCCTATTTATGGATTGATGTTGTTAATCTTTTTCACTTCACTTTTTCATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTATGGATTGATGTTGTTAATCTTTTTCACTTCACTTTTTCATT  483

seq1  TTCCATACTGGGATAATTATATTTCAGAATGTTGGGAACGTATCTGAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACTGGGATAATTATATTTCAGAATGTTGGGAACGTATCTGAGAT  533

seq1  CTTCAAAGGGAAGATCTAGCTCTCTTATCTTTCTCTATTATGATTTATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGGAAGATCTAGCTCTCTTATCTTTCTCTATTATGATTTATAA  583

seq1  TTATTGTGAATAAAATATGCTAATATGAGAAAAATTTAAAATGTCACACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGAATAAAATATGCTAATATGAGAAAAATTTAAAATGTCACACT  633

seq1  ACATATAAGGAAAGCGTTTTCAAATATTGTATGGTAGAGTTATATTGCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAGGAAAGCGTTTTCAAATATTGTATGGTAGAGTTATATTGCAA  683

seq1  ATGTACATTACTATTGTCAGGTGCTCTAATGGTTAACTTGATTGGTACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTACTATTGTCAGGTGCTCTAATGGTTAACTTGATTGGTACAG  733

seq1  TGTTGGATTTAGAATTACAGTGAATTATGAGCTTTAAACAGGACAGAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATTTAGAATTACAGTGAATTATGAGCTTTAAACAGGACAGAAAT  783

seq1  GTTGATCTTTCCAAGCTAACAGGTAGAGCAGTAAAGGATTTTTTATTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCTTTCCAAGCTAACAGGTAGAGCAGTAAAGGATTTTTTATTACA  833

seq1  AGTGAGCCATCTCCACAAGATTTCAAGATTAGAGCATCAATAAAATTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCCATCTCCACAAGATTTCAAGATTAGAGCATCAATAAAATTGTG  883

seq1  TACAAAGCTATAAAATATGGTTCTTTGGAGATACACACTTTTCCAGAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCTATAAAATATGGTTCTTTGGAGATACACACTTTTCCAGAAAT  933

seq1  CAATTTTGTCCCACCACATGCCTCTAAATCATATTATAAAAAGTAAAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTCCCACCACATGCCTCTAAATCATATTATAAAAAGTAAAATC  983

seq1  CTAGGGTTTGAGGGGAACAGAGGAGGGGATTTATTCAACTAATCTGTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTTTGAGGGGAACAGAGGAGGGGATTTATTCAACTAATCTGTCTG  1033

seq1  CTGATAGGACCATAAATAATCCTATTTGAGATATGATATTAGTTTTTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGACCATAAATAATCCTATTTGAGATATGATATTAGTTTTTTGT  1083

seq1  AGGGCTCTCAATAAAATAGAAAAACAGAATTTCTTAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCAATAAAATAGAAAAACAGAATTTCTTAGAATTC  1125

seq1: chr15_89332232_89333488
seq2: B6Ng01-147I16.g_70_1035

seq1  GAATTCTCTTCCAGGAGGGATTTGCTACACATTTTACAGGTGAGGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGGAGGGATTTGCTACACATTTTACAGGTGAGGCAGAG  50

seq1  GGCTTGAGTCACCTGCTGTGACTGCCCGGTGAAGCTGGCTCAGATCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGTCACCTGCTGTGACTGCCCGGTGAAGCTGGCTCAGATCTGTC  100

seq1  TGACTAGGTAGGCCCTGTGGCCTGGGTACACTTAACCTGTATAGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGTAGGCCCTGTGGCCTGGGTACACTTAACCTGTATAGTGTCTT  150

seq1  TGCATCTGGGACCTACTCCCAGATATAGAGTATAGGGCCTGACTCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGGGACCTACTCCCAGATATAGAGTATAGGGCCTGACTCTATTC  200

seq1  ACTTTCTTTTTGAGGGGGTACTAAACCCCTCCTGGGTGTCCAGGGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTTGAGGGGGTACTAAACCCCTCCTGGGTGTCCAGGGGGCAA  250

seq1  GGTGGGTGTCACAGCCCCTTTCCAACTCCCCCAGTTCTGTGGATCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGTCACAGCCCCTTTCCAACTCCCCCAGTTCTGTGGATCAATGG  300

seq1  GAATTTGTTCATGGGATACTTTCTTGATGGGCTCTGGAGTATAGGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTTCATGGGATACTTTCTTGATGGGCTCTGGAGTATAGGGAAAG  350

seq1  GTCTTTGTGACCCCATCTGTGGTCCTAGATCCTTACGCTTACTTGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGACCCCATCTGTGGTCCTAGATCCTTACGCTTACTTGAAAGA  400

seq1  CTTTCCTGCTGCCCCAGGACAGGTGACAGTCAATGGCCATGGCTCTATGC  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTCCTGCTGCCCCAGGACAGGTGACAGTCAATGGCCATGGCTATATGC  450

seq1  TGGGTAGAGACCATGTCAGAGAGGTCTTTGTCTCTCCCTCCACCAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGACCATGTCAGAGAGGTCTTTGTCTCTCCCTCCACCAGCCCT  500

seq1  TGTGTGACCCTGGCACCCTGGGTTCTCCAGCTCTTTTCTCAGGTGCCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACCCTGGCACCCTGGGTTCTCCAGCTCTTTTCTCAGGTGCCCGT  550

seq1  AAGACATGAGAGCCACTTGCCTTTCAGAAAGTCATTTGGTTTTAGGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGAGAGCCACTTGCCTTTCAGAAAGTCATTTGGTTTTAGGATGG  600

seq1  ACCTGGACTTCTGACTGCAGCCCTGTCCCCTGGCTTGCCTGGGGTCCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACTTCTGACTGCAGCCCTGTCCCCTGGCTTGCCTGGGGTCCGGC  650

seq1  TATCCCTAGCTCTCTCTGTTACCTTGGGGCTGGCTAAGGTCTTCCTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTAGCTCTCTCTGTTACCTTGGGGCTGGCTAAGGTCTTCCTAGAG  700

seq1  GATTTGCATAGCTTCTTGTAGGGTTTGAGCACCCTGACCCATGATGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCATAGCTTCTTGTAGGGTTTGAGCACCCTGACCCATGATGCTGG  750

seq1  TCCATGAGGCACCCTTTTCTGTCTGTGGTATAAGCTGCTTGTGAATGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGGCACCCTTTTCTGTCTGTGGTATAAGCTGCTTGTGAATGCCT  800

seq1  GGGCTGGGACTCCTTGCCCTGTGTGGCTGGCACCTGTACCACCAGACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGACTCCTTGCCCTGTGTGGCTGGCACCTGTACCACCAGACAAG  850

seq1  GCCAGTCAGTGAAAC-TTTGCCGGG-TGAAGGACTGGAAGGCAAAGTCAT  898
      ||||||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  GCCAGTCAGTGAAACTTTTGCCGGGTTGAAGGACTGGAAAGCAAAGTCAT  900

seq1  GTCATAGGTGTGCCAGGGGTGTACCATGGGATGTAGGAGGAGCTAGTAAG  948
      |||||||   ||||||||||||| ||||||||||||||||||||||||||
seq2  GTCATAGTGTTGCCAGGGGTGTA-CATGGGATGTAGGAGGAGCTAGTAAG  949

seq1  ATGGGG-TGGAGGAATGAGACCAGAGTTGTTAGGATTTGACACCTGTCAG  997
      |||||| |||||| |||                                 
seq2  ATGGGGTTGGAGG-ATGT--------------------------------  966

seq1  AATGGCCTCAGTGTTCTTTTAGGCTGAGGGAAGGGACTCAGTTGGCCCGT  1047
                                                        
seq2  --------------------------------------------------  966

seq1  GACCGGGGTGACCAGGCTGGGATGTGAGAGTGACCAGGCTCAGGATGACA  1097
                                                        
seq2  --------------------------------------------------  966

seq1  CTGTTGAGGGTCTGCAGGGAAGGGATTTGAAAGTACACGGGTCCAGCCAA  1147
                                                        
seq2  --------------------------------------------------  966

seq1  GCTGGAATGAGACCTGAGGTAAGAGTATAGGGTTGAGGATGAGCAAGCTA  1197
                                                        
seq2  --------------------------------------------------  966

seq1  GGTGACAGGTTAGACACATTGGGGTTAGGGACAGGTGGCCTGGAGCCTGC  1247
                                                        
seq2  --------------------------------------------------  966

seq1  TGGAGGATGT  1257
                
seq2  ----------  966