BAC Information

Click to search

BAC

Clone NameB6Ng01-148E01
Chromosome15 (Build37)
Map Location 27,118,023 - 27,247,391
singlet/doubletdoublet
Overlap genenone
Upstream geneAK162044, Fbxl7, LOC622531, LOC625311
Downstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148E01.bB6Ng01-148E01.g
ACCDH944915DH944916
length1,101394
definitionDH944915|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E01, 5' end.DH944916|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,118,023 - 27,119,132)(27,246,992 - 27,247,391)
sequence
gaattccatgtaataaaccaggtgcggtggtgcacacccgtaatcccagc
acttgggagacagaggcaggaagatctctgtgcatttgaggccagcctgg
tctacatggtgacttcctggacagccagatctacatagtgagaccctttc
caaagcaaacaaacagaattgtgtgcaatagtctgttactctcccgtggc
cactgtccagtacatactgctatgagcctctatttcgaactttatgaact
atagcaacataacccctttccctctcttttcttggtgatttagcccagac
aaggtcatacctaagaaatatctgagatgagggagccacatgctatgcac
tcatccgtccagccatcttcttcttagacagtaggctattcgtgaatgta
ttctacggaggtcactgcactccttgcaaagggagcgccccgtgcagagg
ctcttcctcttctcagggaagccatccttcattcacttacctcactccca
tcctggtctactccttgaaaacgccacttcctgaatcgcgcctcaaacac
cttgcacatgcgcacaacatatttcctgatggaaccctgaaagtatgttg
gggagggtacttcattctaaccaagagcacatttgtgagtttttaccaag
ctcacaactgctctctggacagtttagccaggagcacaggacatgatgtg
agccttcttgatttagaccttatcaggttcactatataatctcagaagac
gtttattttagttgtagcaaatgaaagcatgttctatttcggcatttgaa
ttttaaacaagtcaagagtacactacagtctgtctgctgacccaaacttt
aattggattctggaatagatatgcaaacagaaccattattcaaagacatg
tcagttgctcattgccatagaaatgtgttagaattattcctatccttcgc
ctaataactttttctgtgtacttccctctagttatggccagaccttttcc
cattgcctttttttctcacctccggatcactgattattgctaaattccta
tgcctggtgtgaaagttcagcttgagtcctattttattttactcttttga
a
tttcatttaaaaaaaaaaaaaaaaacgtacgtgtatacgtatgtgctttt
gtaaatctgtgtgtaccaagctcatgcaatggaggccagaaggaggcact
ggaccatctggaactggagttacagttgtttgggagctggaatatacgct
ggaaaactcaactgaggtcctctgcaggagcaatagctgctcctaaccac
tgagctgtctctatagcccaaggatagtgcttgagaaactgaagaagggg
tactcatggaaatatgaagcgtacatagagaggttgagaggagctaggag
ttattccaatttagtgcaaaaaatgaagaaggcttagataaatggtagaa
tggtgtgtgtgtctatctctgtgtgtgtctctgtgtgttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_27118023_27119132
seq2: B6Ng01-148E01.b_46_1146

seq1  GAATTCCATGTAATAAACCAGGTGCGGTGGTGCACACCCGTAATCCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAATAAACCAGGTGCGGTGGTGCACACCCGTAATCCCAGC  50

seq1  ACTTGGGAGACAGAGGCAGGAAGATCTCTGTGCATTTGAGGCCAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGACAGAGGCAGGAAGATCTCTGTGCATTTGAGGCCAGCCTGG  100

seq1  TCTACATGGTGACTTCCTGGACAGCCAGATCTACATAGTGAGACCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGGTGACTTCCTGGACAGCCAGATCTACATAGTGAGACCCTTTC  150

seq1  CAAAGCAAACAAACAGAATTGTGTGCAATAGTCTGTTACTCTCCCGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAACAAACAGAATTGTGTGCAATAGTCTGTTACTCTCCCGTGGC  200

seq1  CACTGTCCAGTACATACTGCTATGAGCCTCTATTTCGAACTTTATGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCAGTACATACTGCTATGAGCCTCTATTTCGAACTTTATGAACT  250

seq1  ATAGCAACATAACCCCTTTCCCTCTCTTTTCTTGGTGATTTAGCCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACATAACCCCTTTCCCTCTCTTTTCTTGGTGATTTAGCCCAGAC  300

seq1  AAGGTCATACCTAAGAAATATCTGAGATGAGGGAGCCACATGCTATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATACCTAAGAAATATCTGAGATGAGGGAGCCACATGCTATGCAC  350

seq1  TCATCCGTCCAGCCATCTTCTTCTTAGACAGTAGGCTATTCGTGAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCGTCCAGCCATCTTCTTCTTAGACAGTAGGCTATTCGTGAATGTA  400

seq1  TTCTACGGAGGTCACTGCACTCCTTGCAAAGGGAGCGCCCCGTGCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGGAGGTCACTGCACTCCTTGCAAAGGGAGCGCCCCGTGCAGAGG  450

seq1  CTCTTCCTCTTCTCAGGGAAGCCATCCTTCATTCACTTACCTCACTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCTTCTCAGGGAAGCCATCCTTCATTCACTTACCTCACTCCCA  500

seq1  TCCTGGTCTACTCCTTGAAAACGCCACTTCCTGAATCGCGCCTCAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCTACTCCTTGAAAACGCCACTTCCTGAATCGCGCCTCAAACAC  550

seq1  CTTGCACATGCGCACAACATATTTCCTGATGGAACCCTGAAAGTATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACATGCGCACAACATATTTCCTGATGGAACCCTGAAAGTATGTTG  600

seq1  GGGAGGGTACTTCATTCTAACCAAGAGCACATTTGTGAGTTTTTACCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTACTTCATTCTAACCAAGAGCACATTTGTGAGTTTTTACCAAG  650

seq1  CTCACAACTGCTCTCTGGACAGTTTAGCCAGGAGCACAGGACATGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTGCTCTCTGGACAGTTTAGCCAGGAGCACAGGACATGATGTG  700

seq1  AGCCTTCTTGATTTAGACCTTATCAGGTTCACTATATAATCTCAGAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTGATTTAGACCTTATCAGGTTCACTATATAATCTCAGAAGAC  750

seq1  GTTTATTTTAGTTGTAGCAAATGAAAGCATGTTCTATTTCGGCATTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTAGTTGTAGCAAATGAAAGCATGTTCTATTTCGGCATTTGAA  800

seq1  TTTTAAACAAGTCAAGAGTACACTACAGTCTGTCTGCTGACCCAAAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTAAACAAGTCAAGAGTACACTACAGTCTGTCTGCTGACCC-AAACTT  849

seq1  TAATTGGATTCTGGAATAGATATGCAAACAGAACCATTATTCAAAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGATTCTGGAATAGATATGCAAACAGAACCATTATTCAAAGACAT  899

seq1  GTCAGTTGCTCATTGCCATAGAAATGTGTTAGAATTATTCCTATCCTTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGCTCATTGCCATAGAAATGTGTTAGAATTATTCCTATCCTTCG  949

seq1  CCTAATAACTTTTTCTGTGTACTTCCCTTCTAGTTTATGGCCAGACCTTT  1000
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CCTAATAACTTTTTCTGTGTACTTCCC-TCTAG-TTATGGCCAGACCTTT  997

seq1  TTCCATTGCCTTTTTTTCTCACCTCCGGATTCAACTGATTATTTGCTAAA  1050
      | ||||||||||||||||||||||||||||   |||||||| ||||||||
seq2  TCCCATTGCCTTTTTTTCTCACCTCCGGAT--CACTGATTA-TTGCTAAA  1044

seq1  TTTCTATGCCT-GTGTGAACAAGTTCAGCTTTGAGTCTATTTTTATTTTA  1099
      || |||||||| ||||||  ||||||||| |||||||   ||||||||| 
seq2  TTCCTATGCCTGGTGTGA--AAGTTCAGC-TTGAGTCCTATTTTATTTT-  1090

seq1  ACTCTTTTGAA  1110
      |||||||||||
seq2  ACTCTTTTGAA  1101

seq1: chr15_27246992_27247391
seq2: B6Ng01-148E01.g_66_465 (reverse)

seq1  CACACAACACACAGAGACACACACAGAGATAGACACACACACCATTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACACACAGAGACACACACAGAGATAGACACACACACCATTCTAC  50

seq1  CATTTATCTAAGCCTTCTTCATTTTTTGCACTAAATTGGAATAACTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTAAGCCTTCTTCATTTTTTGCACTAAATTGGAATAACTCCTA  100

seq1  GCTCCTCTCAACCTCTCTATGTACGCTTCATATTTCCATGAGTACCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTCAACCTCTCTATGTACGCTTCATATTTCCATGAGTACCCCTT  150

seq1  CTTCAGTTTCTCAAGCACTATCCTTGGGCTATAGAGACAGCTCAGTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTCTCAAGCACTATCCTTGGGCTATAGAGACAGCTCAGTGGTT  200

seq1  AGGAGCAGCTATTGCTCCTGCAGAGGACCTCAGTTGAGTTTTCCAGCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCTATTGCTCCTGCAGAGGACCTCAGTTGAGTTTTCCAGCGTA  250

seq1  TATTCCAGCTCCCAAACAACTGTAACTCCAGTTCCAGATGGTCCAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGCTCCCAAACAACTGTAACTCCAGTTCCAGATGGTCCAGTGCC  300

seq1  TCCTTCTGGCCTCCATTGCATGAGCTTGGTACACACAGATTTACAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGCCTCCATTGCATGAGCTTGGTACACACAGATTTACAAAAGC  350

seq1  ACATACGTATACACGTACGTTTTTTTTTTTTTTTTTAAATGAAAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGTATACACGTACGTTTTTTTTTTTTTTTTTAAATGAAAGAATTC  400