BAC Information

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BAC

Clone NameB6Ng01-148N04
Chromosome15 (Build37)
Map Location 79,488,781 - 79,638,049
singlet/doubletdoublet
Overlap gene4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr
Upstream geneLrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
Downstream geneCbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148N04.bB6Ng01-148N04.g
ACCDH945325DH945326
length7921,008
definitionDH945325|Mus musculus domesticus DNA, BAC clone: B6Ng01-148N04, 5' end.DH945326|Mus musculus domesticus DNA, BAC clone: B6Ng01-148N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,637,259 - 79,638,049)(79,488,781 - 79,489,787)
sequence
gaattcacagtctgagatcgctgcaggcagcgggcacaaggatggagaac
caaattatgctcagattaccaattctctctgtctctctctgtctctctgt
ctctgtctctctcctctgtgtatgtttgtgtgtgcctgtctctgtgtgtt
tctgtgtgtctttctctgtttgtctctctctctgtgtgtacatgtctctg
tctctgtgactctgtatctccctgtccccacacccctgtctttcaacagg
gtctcatgaagcccaggataacctggcactcttgatcctcctgtctctac
ctcccaaacgctgtgattacagacatgtaccacttcctggtttatgtgat
acctgggcttcatgcctgctagccaggcactctgccagctgagcactccc
cagtccagagagaaatttttttgtgtactctcattttatattttgtatac
tctcacattcctcattttatagagggggggacacagaaggtgtcaagaaa
ggcctgagatccacctcacctgctaactggcaaattagggcaaagtgcaa
cagtgcacacctttaatccaagctctctgaagctgaggcagagggatatc
tatgagtttgaggccaacctggtctcttgaggaacttgagacagagttcc
aagcctccaagggctacatagaaagaccttgtctcaaaaacaaacaaaaa
caaaccagcaagtcagcaggtttcacagatgctggagaaaagtcaagaat
ctcccctctggggacgggggtggggatagaaattggtggttg
gaattctctcttcgaacgctgtgtggcaaaggtggaggaagactgcttgg
agctgggtcctgtcctttatggtgggatgacctcgtacacccactaggca
gccaagaaacgcctcctggatggccatttcttcatttaccaaaccgagct
acaatgtccttaggacttgaggaatcctggagctgactctccagttctct
accccttgtacactgggcaaccttccctggacctcagtttcccttgcttg
tgggagtgtggaggaggcaagactggcaggagccagtttgctactggcag
ggagtcgtcatatctgtccgtctgtcttacctgaaagcttcggcagaagc
gtcagggcgggttccgccaccagcccctccagtgaccggaccaagctccg
gatgtccgccagcatccgcggcccaaggggcgcggtttgctttgtggccg
gggcgggggagctgcaggtcggtccattttgctactgtgagtccagcctg
ggtcaccacttaacatttttaacacaacaaagcagctttcggcctgcttt
gttgccaaggaaaacgattactatgacgacggcggcgctgacccggggac
cagaccaacgtatttagggggtcatgcctctcccagcctatgccacaagg
catgtgtgtatctccagaagtcgtgcccaaggcatgtgtgtatctccaga
agtcgtgcccaaggctttcttctattcgtgaaccttagagagtccgcaag
ggctccgctgcttcgcggaggctcgtctcggagctggctccctctgcatt
ctcagtggtagaagccagagaggctgcgcatgcgcacgatggttgcccgg
cgcccggccatcgcggtcgcggcggttgacgcggcctggggcagatcctt
gcagaaagctgcaggctagctcgggattccggcttcgcgaacaggtacct
ctgggagcggcgggccgaatatccgtgccagtagtgtggtagggatgcct
gggtaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79637259_79638049
seq2: B6Ng01-148N04.b_48_839 (reverse)

seq1  CCACCACC-ACTTCTATCCCCACCCCCGTCCCCAGAGGGGAGATTCTTGA  49
      | |||||| | |||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCAATTTCTATCCCCACCCCCGTCCCCAGAGGGGAGATTCTTGA  50

seq1  CTTTTCTCCAGCATCTGTGAAACCTGCTGACTTGCTGGTTTGTTTTTGTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCAGCATCTGTGAAACCTGCTGACTTGCTGGTTTGTTTTTGTT  100

seq1  TGTTTTTGAGACAAGGTCTTTCTATGTAGCCCTTGGAGGCTTGGAACTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGAGACAAGGTCTTTCTATGTAGCCCTTGGAGGCTTGGAACTCT  150

seq1  GTCTCAAGTTCCTCAAGAGACCAGGTTGGCCTCAAACTCATAGATATCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAGTTCCTCAAGAGACCAGGTTGGCCTCAAACTCATAGATATCCC  200

seq1  TCTGCCTCAGCTTCAGAGAGCTTGGATTAAAGGTGTGCACTGTTGCACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAGCTTCAGAGAGCTTGGATTAAAGGTGTGCACTGTTGCACTT  250

seq1  TGCCCTAATTTGCCAGTTAGCAGGTGAGGTGGATCTCAGGCCTTTCTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAATTTGCCAGTTAGCAGGTGAGGTGGATCTCAGGCCTTTCTTGA  300

seq1  CACCTTCTGTGTCCCCCCCTCTATAAAATGAGGAATGTGAGAGTATACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTGTGTCCCCCCCTCTATAAAATGAGGAATGTGAGAGTATACAA  350

seq1  AATATAAAATGAGAGTACACAAAAAAATTTCTCTCTGGACTGGGGAGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATGAGAGTACACAAAAAAATTTCTCTCTGGACTGGGGAGTGC  400

seq1  TCAGCTGGCAGAGTGCCTGGCTAGCAGGCATGAAGCCCAGGTATCACATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGCAGAGTGCCTGGCTAGCAGGCATGAAGCCCAGGTATCACATA  450

seq1  AACCAGGAAGTGGTACATGTCTGTAATCACAGCGTTTGGGAGGTAGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAAGTGGTACATGTCTGTAATCACAGCGTTTGGGAGGTAGAGAC  500

seq1  AGGAGGATCAAGAGTGCCAGGTTATCCTGGGCTTCATGAGACCCTGTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATCAAGAGTGCCAGGTTATCCTGGGCTTCATGAGACCCTGTTGA  550

seq1  AAGACAGGGGTGTGGGGACAGGGAGATACAGAGTCACAGAGACAGAGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGGTGTGGGGACAGGGAGATACAGAGTCACAGAGACAGAGACA  600

seq1  TGTACACACAGAGAGAGAGACAAACAGAGAAAGACACACAGAAACACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACAGAGAGAGAGACAAACAGAGAAAGACACACAGAAACACACA  650

seq1  GAGACAGGCACACACAAACATACACAGAGGAGAGAGACAGAGACAGAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCACACACAAACATACACAGAGGAGAGAGACAGAGACAGAGAG  700

seq1  ACAGAGAGAGACAGAGAGAATTGGTAATCTGAGCATAATTTGGTTCTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGACAGAGAGAATTGGTAATCTGAGCATAATTTGGTTCTCCA  750

seq1  TCCTTGTGCCCGCTGCCTGCAGCGATCTCAGACTGTGAATTC  791
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGCCCGCTGCCTGCAGCGATCTCAGACTGTGAATTC  792

seq1: chr15_79488781_79489787
seq2: B6Ng01-148N04.g_68_1075

seq1  GAATTCTCTCTTCGAACGCTGTGTGGCAAAGGTGGAGGAAGACTGCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTCGAACGCTGTGTGGCAAAGGTGGAGGAAGACTGCTTGG  50

seq1  AGCTGGGTCCTGTCCTTTATGGTGGGATGACCTCGTACACCCACTAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTCCTGTCCTTTATGGTGGGATGACCTCGTACACCCACTAGGCA  100

seq1  GCCAAGAAACGCCTCCTGGATGGCCATTTCTTCATTTACCAAACCGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAACGCCTCCTGGATGGCCATTTCTTCATTTACCAAACCGAGCT  150

seq1  ACAATGTCCTTAGGACTTGAGGAATCCTGGAGCTGACTCTCCAGTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCCTTAGGACTTGAGGAATCCTGGAGCTGACTCTCCAGTTCTCT  200

seq1  ACCCCTTGTACACTGGGCAACCTTCCCTGGACCTCAGTTTCCCTTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGTACACTGGGCAACCTTCCCTGGACCTCAGTTTCCCTTGCTTG  250

seq1  TGGGAGTGTGGAGGAGGCAAGACTGGCAGGAGCCAGTTTGCTACTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGTGGAGGAGGCAAGACTGGCAGGAGCCAGTTTGCTACTGGCAG  300

seq1  GGAGTCGTCATATCTGTCCGTCTGTCTTACCTGAAAGCTTCGGCAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGTCATATCTGTCCGTCTGTCTTACCTGAAAGCTTCGGCAGAAGC  350

seq1  GTCAGGGCGGGTTCCGCCACCAGCCCCTCCAGTGACCGGACCAAGCTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCGGGTTCCGCCACCAGCCCCTCCAGTGACCGGACCAAGCTCCG  400

seq1  GATGTCCGCCAGCATCCGCGGCCCAAGGGGCGCGGTTTGCTTTGTGGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCGCCAGCATCCGCGGCCCAAGGGGCGCGGTTTGCTTTGTGGCCG  450

seq1  GGGCGGGGGAGCTGCAGGTCGGTCCATTTTGCTACTGTGAGTCCAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGGAGCTGCAGGTCGGTCCATTTTGCTACTGTGAGTCCAGCCTG  500

seq1  GGTCACCACTTAACATTTTTAACACAACAAAGCAGCTTTCGGCCTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCACTTAACATTTTTAACACAACAAAGCAGCTTTCGGCCTGCTTT  550

seq1  GTTGCCAAGGAAAACGATTACTATGACGACGGCGGCGCTGACCCGGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAAGGAAAACGATTACTATGACGACGGCGGCGCTGACCCGGGGAC  600

seq1  CAGACCAACGTATTTAGGGGGTCATGCCTCTCCCAGCCTATGCCACAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAACGTATTTAGGGGGTCATGCCTCTCCCAGCCTATGCCACAAGG  650

seq1  CATGTGTGTATCTCCAGAAGTCGTGCCCAAGGCATGTGTGTATCTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTATCTCCAGAAGTCGTGCCCAAGGCATGTGTGTATCTCCAGA  700

seq1  AGTCGTGCCCAAGGCTTTCTTCTATTCGTGAACCTTAGAGAGTCCGCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTCGTGCCCAAGGCTTTCTTCTATTCGTGAACCTTAGAGAGTCCGCAAG  750

seq1  GGCTCCGCTGCTTCGCGGAGGCTCGTCTCGGAGCTGGCTCCCTCTGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGCTGCTTCGCGGAGGCTCGTCTCGGAGCTGGCTCCCTCTGCATT  800

seq1  CTCAGTGGTAGAAGCCAGAGAGGCTGCGCATGCGCACGATGGTTGCCCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTAGAAGCCAGAGAGGCTGCGCATGCGCACGATGGTTGCCCGG  850

seq1  CGCCGGCCAATCGCGGTCGCGGCGGTTGACGCGGCCT-GGGCAGATCCTT  899
      |||| | | |||||||||||||||||||||||||||| ||||||||||||
seq2  CGCCCGGCCATCGCGGTCGCGGCGGTTGACGCGGCCTGGGGCAGATCCTT  900

seq1  GCAGAAAGCTGCAGGCTAGCTCGGGATTCCGGCTTCGCAGACAGGTACCT  949
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GCAGAAAGCTGCAGGCTAGCTCGGGATTCCGGCTTCGCGAACAGGTACCT  950

seq1  CTGGGAGCGGCGGG-CGGATATCCGTGCCAGTAGTGGTGGGTGGGATGCC  998
      |||||||||||||| || ||||||||||||||||| ||||  ||||||||
seq2  CTGGGAGCGGCGGGCCGAATATCCGTGCCAGTAGT-GTGGTAGGGATGCC  999

seq1  CGGGTACCC  1007
       ||||||||
seq2  TGGGTACCC  1008