BAC Information

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BAC

Clone NameB6Ng01-149E12
Chromosome15 (Build37)
Map Location 73,069,741 - 73,250,385
singlet/doubletdoublet
Overlap genePtk2, LOC666053
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2
Downstream geneLOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149E12.bB6Ng01-149E12.g
ACCDH945663DH945664
length9741,085
definitionDH945663|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E12, 5' end.DH945664|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,069,741 - 73,070,710)(73,249,282 - 73,250,385)
sequence
gaattcatgactctggcctgtatttttgtttttaatttttttgagataag
gttttgatatgtagctctatcactatgtcctcaaacatgttattttcttc
cttagccctggtatgtgggaaggtaagcaagagccacatcttacttctat
cttctcctttagatggactacttacctatgtgtgaccctgtcacatccca
ccatccatctggagagcactagttcactaatgtatgcagaccatctcagt
aagacacattctagaagacaggatgtacctctgtgtgaaacactgtcctc
taagcaaatagccacctttatcagggaggctgtgactacttgcaagagcc
cctaaaggtcatgcttgttgctgtaccttcatatactgggttcattccct
ctgtaccttcctgccaggtatctataattcagattcagctgcacatggcc
ttggctatgctagagaatgtagtatggaaagttaactaaagttcgcatag
tagtgtggaacttggcagttggtgcagctgttttggggccacccatgttc
ctataagcagcctctccccatattctgtgggttagacaatatattgcctg
gtctaacaagctggacttggtcactgcagccctctctgaagtgaacagat
ttctgttttcaagtccaaggaaattaacacaacaactaacaatcattgtg
ttaatgttgccatgagacctccaaaacagccttcaacctggaatctatca
tggtcaagaatttgtgtttgaaaattcaagctttaggaataattttcaat
gaagtgagggcttcccttttactttctgagatgaaattccaccaaattca
ccaatctgaacaacgtatttttctcgtgcatgctggacaggccctcactc
aacactaattaccttcattagggccattctttcattaaactatgaatttt
tcttagtgatgtgttgtgtggtgg
gaattctgtatgattcagcgttcagtttaagtggagtttagtgggtgctg
ttgtatctaatctgcaatcttggaactgggaaatagaatttgtgtgtgct
gctggagctggaagacagcattactagtgttgaccagagtttacggacat
gaagatgtttccttatcagccttaaaattaattaaagtagttctatgtgg
aacttgctgatgaatacttccccttgctggaaagaaaatgactggaatca
tcttataataggggagtgatcttaccactgggcccctgtgagtgtcactg
ccttctggggaaacctgggagagtttctcctccttcccagccttggatgg
ggattttgcttcaatgttattcctatgagaactgttggcctgcaggtgct
gtagcacccctagtgtacacagaagacctgcatgttgaagttcagagtaa
cttgtgggggtcacctggctcatattggtagctctggaggggaaatggcc
acccagggcctgcaggactggacaaagcttaactggttttcagaatgtga
gtgatggtacctgggaagtttagataagtagattctgtcttggcactttc
agaaccagagcttctgactttaaacagcacaatatagactagccattgag
tgtatcagagttttggttattttggagtcagttaagaattagttaaatac
agatatataagggtggaacagtgctttgatggtgcttacttgttttagta
gctgacacagcctcgagggtttctgcgagtgattgttcttggattaatgt
gtataaggggaacagtttatggaaagcaaagaggcaaggcatgagcttcc
ctgtgtagtaactcccagaaattttccttccttccttccttccttccttc
tttcttcttctttcttcttctttctttcttcttcttcttcttcttcttct
gaaatagggttctttgagtcctgctgtcctggactcactctgtagacaag
gctggcctcaaactccagaatctgcctgctctgcctccaagtgcttggaa
taaagcgtgtggccaccaccacctgactgggttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73069741_73070710
seq2: B6Ng01-149E12.b_46_1019

seq1  GAATTCATGACTCTGGCCTGTATTTTTGTTGTTAATTTTTTTGAGATAAG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCATGACTCTGGCCTGTATTTTTGTTTTTAATTTTTTTGAGATAAG  50

seq1  GTTTTGATATGTAGCTCTATCACTATGTCCTCAAACATGTTATTTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATATGTAGCTCTATCACTATGTCCTCAAACATGTTATTTTCTTC  100

seq1  CTTAGCCCTGGTATGTGGGAAGGTAAGCAAGAGCCACATCTTACTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCTGGTATGTGGGAAGGTAAGCAAGAGCCACATCTTACTTCTAT  150

seq1  CTTCTCCTTTAGATGGACTACTTACCTATGTGTGACCCTGTCACATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTTAGATGGACTACTTACCTATGTGTGACCCTGTCACATCCCA  200

seq1  CCATCCATCTGGAGAGCACTAGTTCACTAATGTATGCAGACCATCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCTGGAGAGCACTAGTTCACTAATGTATGCAGACCATCTCAGT  250

seq1  AAGACACATTCTAGAAGACAGGATGTACCTCTGTGTGAAACACTGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACATTCTAGAAGACAGGATGTACCTCTGTGTGAAACACTGTCCTC  300

seq1  TAAGCAAATAGCCACCTTTATCAGGGAGGCTGTGACTACTTGCAAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATAGCCACCTTTATCAGGGAGGCTGTGACTACTTGCAAGAGCC  350

seq1  CCTAAAGGTCATGCTTGTTGCTGTACCTTCATATACTGGGTTCATTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGTCATGCTTGTTGCTGTACCTTCATATACTGGGTTCATTCCCT  400

seq1  CTGTACCTTCCTGCCAGGTATCTATAATTCAGATTCAGCTGCACATGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTTCCTGCCAGGTATCTATAATTCAGATTCAGCTGCACATGGCC  450

seq1  TTGGCTATGCTAGAGAATGTAGTATGGAAAGTTAACTAAAGTTCGCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATGCTAGAGAATGTAGTATGGAAAGTTAACTAAAGTTCGCATAG  500

seq1  TAGTGTGGAACTTGGCAGTTGGTGCAGCTGTTTTGGGGCCACCCATGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGAACTTGGCAGTTGGTGCAGCTGTTTTGGGGCCACCCATGTTC  550

seq1  CTATAAGCAGCCTCTCCCCATATTCTGTGGGTTAGACAATATATTGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCAGCCTCTCCCCATATTCTGTGGGTTAGACAATATATTGCCTG  600

seq1  GTCTAACAAGCTGGACTTGGTCACTGCAGCCCTCTCTGAAGTGAACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACAAGCTGGACTTGGTCACTGCAGCCCTCTCTGAAGTGAACAGAT  650

seq1  TTCTGTTTTCAAGTCCAAGGAAATTAACACAACAACTAACAATCA-TGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTGTTTTCAAGTCCAAGGAAATTAACACAACAACTAACAATCATTGTG  700

seq1  TTAATGTTGCCATGAGACCTCCAAAACAGCCTTCAACCTGGAATCTATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTGCCATGAGACCTCCAAAACAGCCTTCAACCTGGAATCTATCA  750

seq1  TGGTCAAGAATTTGTGTTTGAAAATTCAAGCTTTAGGAATAATTTTCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGAATTTGTGTTTGAAAATTCAAGCTTTAGGAATAATTTTCAAT  800

seq1  GAAGTGAGGGCTT-CCTTTTACTTTCTGAGATGAAATTCCACCAAATTCA  848
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGGCTTCCCTTTTACTTTCTGAGATGAAATTCCACCAAATTCA  850

seq1  CCAATCTGAACAACGTATTTTTCTCGTGCATGCTGGACAGGCCTTCACTC  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCAATCTGAACAACGTATTTTTCTCGTGCATGCTGGACAGGCCCTCACTC  900

seq1  AACACTACATTACCTTCATTAGGGCCATTCTTCCA-TAAACTATGAATTT  947
      ||||||| |||||||||||||||||||||||| || ||||||||||||||
seq2  AACACTA-ATTACCTTCATTAGGGCCATTCTTTCATTAAACTATGAATTT  949

seq1  TTCTTAGTG-TATG-TGTGTGGTGG  970
      ||||||||| | || ||||||||||
seq2  TTCTTAGTGATGTGTTGTGTGGTGG  974

seq1: chr15_73249282_73250385
seq2: B6Ng01-149E12.g_67_1151 (reverse)

seq1  GGAA-CCAGTCAGGTGGTGGTGG-CACACGCCTTTAATCCCAGCACTTGG  48
      |||| |||||||||||||||||| |||||| ||||| ||| ||||||| |
seq2  GGAACCCAGTCAGGTGGTGGTGGCCACACG-CTTTATTCCAAGCACTT-G  48

seq1  GAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTCGTCTACAGA  98
      |||||||| |||||||||||   ||||| ||||||||||| |||||||||
seq2  GAGGCAGA-GCAGGCAGATTCTGGAGTTTGAGGCCAGCCTTGTCTACAGA  97

seq1  GTGAGTTCCAGGACAGCCAGGACTACAGAGAAACCCTATCTCAAGAAAGA  148
      ||||| |||||||||| ||||||| || || |||||||| |||       
seq2  GTGAG-TCCAGGACAG-CAGGACT-CAAAG-AACCCTATTTCA------G  137

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  198
      |||||   |||||   |||||   |||||||||||||   ||||||||| 
seq2  AAGAA--GAAGAA--GAAGAA--GAAGAAAGAAAGAA--GAAGAAAGAA-  178

seq1  GAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAAATTTCTGGGAGTT  248
        ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -GAAGAAAG-AAGGAAGGAAGGAAGGAAGGAAGGAAAATTTCTGGGAGTT  226

seq1  ACTACACAGGGAAGCTCATGCCTTGCCTCTTTGCTTTCCATAAACTGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGGGAAGCTCATGCCTTGCCTCTTTGCTTTCCATAAACTGTTC  276

seq1  CCCTTATACACATTAATCCAAGAACAATCACTCGCAGAAACCCTCGAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATACACATTAATCCAAGAACAATCACTCGCAGAAACCCTCGAGGC  326

seq1  TGTGTCAGCTACTAAAACAAGTAAGCACCATC-AAGCACTGTTCCACCCT  397
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGTCAGCTACTAAAACAAGTAAGCACCATCAAAGCACTGTTCCACCCT  376

seq1  TATATATCTGTATTTAACTAATTCTTAACTGACTCC-AAATAACCAAAAC  446
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATATATCTGTATTTAACTAATTCTTAACTGACTCCAAAATAACCAAAAC  426

seq1  TCTGATACACTCAATGGCTAGTCTATATTGTGCTGTTT-AAGTCAGAAGC  495
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTGATACACTCAATGGCTAGTCTATATTGTGCTGTTTAAAGTCAGAAGC  476

seq1  TCTGGTTCTGAAAGTGCCAAGACAGAATCTACTTATCTAAACTTCCCAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTGAAAGTGCCAAGACAGAATCTACTTATCTAAACTTCCCAGG  526

seq1  TACCATCACTCACATTCTGAAAACCAGTTAAGCTTTGTCCAGTCCTGCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCACTCACATTCTGAAAACCAGTTAAGCTTTGTCCAGTCCTGCAG  576

seq1  GCCCTGGGTGGCCATTTCCCCTCCAGAGCTACCAATATGAGCCAGGTGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGTGGCCATTTCCCCTCCAGAGCTACCAATATGAGCCAGGTGAC  626

seq1  CCCCACAAGTTACTCTGAACTTCAACATGCAGGTCTTCTGTGTACACTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAAGTTACTCTGAACTTCAACATGCAGGTCTTCTGTGTACACTAG  676

seq1  GGGTGCTACAGCACCTGCAGGCCAACAGTTCTCATAGGAATAACATTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTACAGCACCTGCAGGCCAACAGTTCTCATAGGAATAACATTGAA  726

seq1  GCAAAATCCCCATCCAAGGCTGGGAAGGAGGAGAAACTCTCCCAGGTTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCCCCATCCAAGGCTGGGAAGGAGGAGAAACTCTCCCAGGTTTC  776

seq1  CCCAGAAGGCAGTGACACTCACAGGGGCCCAGTGGTAAGATCACTCCCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGCAGTGACACTCACAGGGGCCCAGTGGTAAGATCACTCCCCT  826

seq1  ATTATAAGATGATTCCAGTCATTTTCTTTCCAGCAAGGGGAAGTATTCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGATGATTCCAGTCATTTTCTTTCCAGCAAGGGGAAGTATTCAT  876

seq1  CAGCAAGTTCCACATAGAACTACTTTAATTAATTTTAAGGCTGATAAGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTCCACATAGAACTACTTTAATTAATTTTAAGGCTGATAAGGA  926

seq1  AACATCTTCATGTCCGTAAACTCTGGTCAACACTAGTAATGCTGTCTTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTCATGTCCGTAAACTCTGGTCAACACTAGTAATGCTGTCTTCC  976

seq1  AGCTCCAGCAGCACACACAAATTCTATTTCCCAGTTCCAAGATTGCAGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCAGCACACACAAATTCTATTTCCCAGTTCCAAGATTGCAGAT  1026

seq1  TAGATACAACAGCACCCACTAAACTCCACTTAAACTGAACGCTGAATCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAACAGCACCCACTAAACTCCACTTAAACTGAACGCTGAATCAT  1076

seq1  ACAGAATTC  1104
      |||||||||
seq2  ACAGAATTC  1085