BAC Information

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BAC

Clone NameB6Ng01-149M14
Chromosome15 (Build37)
Map Location 50,001,877 - 50,143,129
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149M14.bB6Ng01-149M14.g
ACCDH946032DH946033
length1,0921,145
definitionDH946032|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M14, 5' end.DH946033|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,142,016 - 50,143,129)(50,001,877 - 50,003,048)
sequence
gaattctgtcaatttttatgtttagtcatggacaatctaagagaaatgtt
ttccatgtgaattgactaaaacctatatttagtaagaaaacaacttcaga
aaaattggctacttatataaattcaggtgatacatgatgaagttggaatt
gggcatttcaagtatttgtatcttgagagtactagtattactctcttgct
taataaatactcaaagaatttagtttgttattctcttttatgtgtctaaa
agtcctcagggagattaactctctatgctttttggggggttctctttcta
tatttttttaattactttattttctgtcaaatctttagcttggaaggtaa
tacatacattttctaagaatggatgcttacaaatgatttctgtgatttta
caattaaactaatagtagggcacttaaatttatatttaatttttaagtat
atagtggaaaagttaaaatggtcacacattataaaagttgtttggtgaac
ataggacttaaatttaatgattagtttgattgcaatgagaaaaactcgtg
tcgtgagtgtacaacctacttgatatttatcaccctagcaatataaagag
ggcagttgatgtacaatagggagactaattatccagctaatggaaaataa
attaactttattatttcttgtaattattcaatttagcctagtctaaagat
tgacaataatttttcataaaggagttattatcatcattattactagcata
tttaatctcctgctaagaagtgaagtatgatttttttttttctttgaaac
tttctggttttttttcctttagtattcaaggtgtatgacatattcctcca
tttttgtggaacagtctagcttccggaaactaaatctgtttatagtttta
agcatttgaaattttgatcagaatacaggtatgactgggtttacatgatg
tcatcgagttgtgtgtaaatcatagagcagggactagtgcataggttcta
tcatgggggatgagactctgacttcagtttcactgctggcacattatatg
ccactttgagggctgaatttttccagaaagttgctttttaat
gaattccagtgcctgatatataaaatgggtcaaatgtcctatttccttga
cactagtcatatggttatatctagatagaagaaaagctgaaaaagtcatc
tttttataatagttgtatgtcctgatgatctaaatagaaagaaggaaaat
gggcattaacatatactacatgttctaagagctgttagaaatttgacagc
aacttaaaaacaaatccctttcttcatacatgaaaattcaactgatgtca
tttcttacaaattaactaacttactaggccttgctaaagtgaaaagacta
ggatttccaaagtcactcaaggacatccctaaggtgggcagctcaataaa
cactaaccgaacaatccccagtacacaagcggctataattgaagttacat
tagtcagaacactcatatttgcttttcacacattcaataacaaaactctg
aaattaaatttgatcaagtacctgagtttttacatgaatacatagtcttt
tatagtaacattaaatgccagaaagtttaatgttgtatatattaagtgtt
tggatctaccaggaattttgaaccagaacaaagtacataaaattcatgca
tgtttggcacactcctaaaaataacacagtccagtttctttgcacgtgtt
cagcacagcttttggtattattatgatgaagtattaccaaattacatgat
gtaatactactcaccaggagaaaagaagaaagaaatttctgtgtgccttt
tgggacagagttaacagaaaagcaaacaacatgttagctgagtgtccaag
cacactgacaaataagaaagacaaatgatcagaatgaaactgagttgggc
aatgtcacatcctctacaacataatatagcatagaagtttgccaggggaa
actgtgcaaagtgctgtgaaatagaagtaagtcaaattattaagtgtaaa
tgctgagatatcattaaacttgaagcagtattctcagcatgagaatacta
gctaaatatttccacaaatgattggcagagaacaactccttagcatatat
tttgaattaccatgggctagactcctttaagaagttaactccaaatccaa
ggtgcattcttgtaccccagtactgcttcaactcctcaaactgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50142016_50143129
seq2: B6Ng01-149M14.b_50_1141 (reverse)

seq1  ATTAAAATAGCAACTATTCTTGAAAAAAATTCAGGCCCCTCAAAAGTTGT  50
      ||||||| ||||||| |||| |  ||||||||||  ||||| |||||   
seq2  ATTAAAA-AGCAACT-TTCTGG--AAAAATTCAG--CCCTC-AAAGT--G  41

seq1  GCATATAAATGTTTGCCAAGCAGGTTGAAACTTGAAGTCAGAGGTCTCAT  100
      ||||||||   | |||| |||||  |||||| |||||||||| |||||||
seq2  GCATATAA---TGTGCC-AGCAG--TGAAAC-TGAAGTCAGA-GTCTCAT  83

seq1  CACCCATGATAGAACCTATGCACTAGTCCCTTGCTCTATGATTTTACACA  150
      | |||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  CCCCCATGATAGAACCTATGCACTAGTCCC-TGCTCTATGA-TTTACACA  131

seq1  CAACTCGATGACATCATGTAAAACCAGTCATACCTGTTATTCTTGATCAA  200
      |||||||||||||||||||||| ||||||||||||| ||||| |||||||
seq2  CAACTCGATGACATCATGTAAACCCAGTCATACCTG-TATTC-TGATCAA  179

seq1  AATTTCAAATGCTTAAAACTATAAACAGATTTAGTTTTCCGGAAGCTAGA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTTCAAATGCTTAAAACTATAAACAGATTTAG-TTTCCGGAAGCTAGA  228

seq1  CTGTTCCACAAAAATGGAGGAATATGTCATACACCTTGAATACTAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTTCCACAAAAATGGAGGAATATGTCATACACCTTGAATACTAAAGG-  277

seq1  AAAAAAAACCAGAAAGTTTCAAAG-AAAAAAAAAATCATACTTCACTTCT  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAAAAACCAGAAAGTTTCAAAGAAAAAAAAAAATCATACTTCACTTCT  327

seq1  TAGCAGGAGATTAAATATGCTAGTAATAATGATGATAATAACTCCTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGATTAAATATGCTAGTAATAATGATGATAATAACTCCTTTAT  377

seq1  GAAAAATTATTGTCAATCTTTAGACTAGGCTAAATTGAATAATTACAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATTGTCAATCTTTAGACTAGGCTAAATTGAATAATTACAAGA  427

seq1  AATAATAAAGTTAATTTATTTTCCATTAGCTGGATAATTAGTCTCCCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAGTTAATTTATTTTCCATTAGCTGGATAATTAGTCTCCCTAT  477

seq1  TGTACATCAACTGCCCTCTTTATATTGCTAGGGTGATAAATATCAAGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCAACTGCCCTCTTTATATTGCTAGGGTGATAAATATCAAGTAG  527

seq1  GTTGTACACTCACGACACGAGTTTTTCTCATTGCAATCAAACTAATCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACACTCACGACACGAGTTTTTCTCATTGCAATCAAACTAATCATT  577

seq1  AAATTTAAGTCCTATGTTCACCAAACAACTTTTATAATGTGTGACCATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGTCCTATGTTCACCAAACAACTTTTATAATGTGTGACCATTT  627

seq1  TAACTTTTCCACTATATACTTAAAAATTAAATATAAATTTAAGTGCCCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCCACTATATACTTAAAAATTAAATATAAATTTAAGTGCCCTA  677

seq1  CTATTAGTTTAATTGTAAAATCACAGAAATCATTTGTAAGCATCCATTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTTTAATTGTAAAATCACAGAAATCATTTGTAAGCATCCATTCT  727

seq1  TAGAAAATGTATGTATTACCTTCCAAGCTAAAGATTTGACAGAAAATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGTATGTATTACCTTCCAAGCTAAAGATTTGACAGAAAATAAA  777

seq1  GTAATTAAAAAAATATAGAAAGAGAACCCCCCAAAAAGCATAGAGAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAAAAAATATAGAAAGAGAACCCCCCAAAAAGCATAGAGAGTTA  827

seq1  ATCTCCCTGAGGACTTTTAGACACATAAAAGAGAATAACAAACTAAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTGAGGACTTTTAGACACATAAAAGAGAATAACAAACTAAATTC  877

seq1  TTTGAGTATTTATTAAGCAAGAGAGTAATACTAGTACTCTCAAGATACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTATTTATTAAGCAAGAGAGTAATACTAGTACTCTCAAGATACAA  927

seq1  ATACTTGAAATGCCCAATTCCAACTTCATCATGTATCACCTGAATTTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGAAATGCCCAATTCCAACTTCATCATGTATCACCTGAATTTATA  977

seq1  TAAGTAGCCAATTTTTCTGAAGTTGTTTTCTTACTAAATATAGGTTTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCCAATTTTTCTGAAGTTGTTTTCTTACTAAATATAGGTTTTAG  1027

seq1  TCAATTCACATGGAAAACATTTCTCTTAGATTGTCCATGACTAAACATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCACATGGAAAACATTTCTCTTAGATTGTCCATGACTAAACATAA  1077

seq1  AAATTGACAGAATTC  1114
      |||||||||||||||
seq2  AAATTGACAGAATTC  1092

seq1: chr15_50001877_50003048
seq2: B6Ng01-149M14.g_68_1212

seq1  GAATTCCAGTGCCTGATATATAAAATGGGTCAAATGTCCTATTTCCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCTGATATATAAAATGGGTCAAATGTCCTATTTCCTTGA  50

seq1  CACTAGTCATATGGTTATATCTAGATAGAAGAAAAGCTGAAAAAGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCATATGGTTATATCTAGATAGAAGAAAAGCTGAAAAAGTCATC  100

seq1  TTTTTATAATAGTTGTATGTCCTGATGATCTAAATAGAAAGAAGGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAATAGTTGTATGTCCTGATGATCTAAATAGAAAGAAGGAAAAT  150

seq1  GGGCATTAACATATACTACATGTTCTAAGAGCTGTTAGAAATTTGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTAACATATACTACATGTTCTAAGAGCTGTTAGAAATTTGACAGC  200

seq1  AACTTAAAAACAAATCCCTTTCTTCATACATGAAAATTCAACTGATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAACAAATCCCTTTCTTCATACATGAAAATTCAACTGATGTCA  250

seq1  TTTCTTACAAATTAACTAACTTACTAGGCCTTGCTAAAGTGAAAAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACAAATTAACTAACTTACTAGGCCTTGCTAAAGTGAAAAGACTA  300

seq1  GGATTTCCAAAGTCACTCAAGGACATCCCTAAGGTGGGCAGCTCAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCAAAGTCACTCAAGGACATCCCTAAGGTGGGCAGCTCAATAAA  350

seq1  CACTAACCGAACAATCCCCAGTACACAAGCGGCTATAATTGAAGTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACCGAACAATCCCCAGTACACAAGCGGCTATAATTGAAGTTACAT  400

seq1  TAGTCAGAACACTCATATTTGCTTTTCACACATTCAATAACAAAACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAACACTCATATTTGCTTTTCACACATTCAATAACAAAACTCTG  450

seq1  AAATTAAATTTGATCAAGTACCTGAGTTTTTACATGAATACATAGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTTGATCAAGTACCTGAGTTTTTACATGAATACATAGTCTTT  500

seq1  TATAGTAACATTAAATGCCAGAAAGTTTAATGTTGTATATATTAAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAACATTAAATGCCAGAAAGTTTAATGTTGTATATATTAAGTGTT  550

seq1  TGGATCTACCAGGAATTTTGAACCAGAACAAAGTACATAAAATTCATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTACCAGGAATTTTGAACCAGAACAAAGTACATAAAATTCATGCA  600

seq1  TGTTTGGCACACTCCTAAAAATAACACAGTCCAGTTTCTTTGCACGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCACACTCCTAAAAATAACACAGTCCAGTTTCTTTGCACGTGTT  650

seq1  CAGCACAGCTTTTGGTATTATTATGATGAAGTATTACCAAATTACATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCTTTTGGTATTATTATGATGAAGTATTACCAAATTACATGAT  700

seq1  GTAATACTACTCACCAGGAGAAAAGAAGAAAGAAATTTCTGTGTGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTACTCACCAGGAGAAAAGAAGAAAGAAATTTCTGTGTGCCTTT  750

seq1  TGGGACAGAGTTAACAGAAAAGCAAACAACATGTTAGCTGAGTGTCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGAGTTAACAGAAAAGCAAACAACATGTTAGCTGAGTGTCCAAG  800

seq1  CACACTGACAAATAAGAAAGACAAATGATCAGAATGAAACTGAGTTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACAAATAAGAAAGACAAATGATCAGAATGAAACTGAGTTGGGC  850

seq1  AATGTCACATCCTCTACAACATAATATAGGCATAGAAGTTTGCCAGGGGA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATGTCACATCCTCTACAACATAATATA-GCATAGAAGTTTGCCAGGGGA  899

seq1  AACTGTGCAAAGTGCTGTGAAATAGAAGTAAGTCAAATTATTAAGGTGTA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  AACTGTGCAAAGTGCTGTGAAATAGAAGTAAGTCAAATTATTAA-GTGT-  947

seq1  AAATGCTGGAGATATCATTAAACTTGAAGGCAGGTATTCCTCAGGCATGA  1000
      ||||||| |||||||||||||||||||| ||| ||||| |||| ||||||
seq2  AAATGCT-GAGATATCATTAAACTTGAA-GCA-GTATT-CTCA-GCATGA  992

seq1  GAATACTAGCTAAATATTTCCACAAATGATTGGGCAGAGGAACAACTTCC  1050
      ||||||||||||||||||||||||||||||| |||||| ||||||| |||
seq2  GAATACTAGCTAAATATTTCCACAAATGATT-GGCAGA-GAACAAC-TCC  1039

seq1  TTAGCATATATTTTGAAATTACCATGTGCTAGAACTCCTTTTAAGAGTGT  1100
      ||||||||||||||| |||||||||| ||||| ||||| |||||||   |
seq2  TTAGCATATATTTTG-AATTACCATGGGCTAG-ACTCC-TTTAAGAAGTT  1086

seq1  AACTTCACAAATCAAAGGTTGCCATTCTTGTTACCCCAGTTTACCTGCTT  1150
      ||||   |||||| |||||   |||||||| |||||||||    ||||||
seq2  AACT--CCAAATCCAAGGT--GCATTCTTG-TACCCCAGT---ACTGCTT  1128

seq1  TTCAAACTTCTCTCAAACTGGA  1172
          ||||   |||||||||||
seq2  ---CAACT--CCTCAAACTGGA  1145