BAC Information

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BAC

Clone NameB6Ng01-149M23
Chromosome15 (Build37)
Map Location 97,990,932 - 98,210,602
singlet/doubletdoublet
Overlap geneAI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283
Upstream geneAmigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8
Downstream gene1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149M23.bB6Ng01-149M23.g
ACCDH946049DH946050
length1,117656
definitionDH946049|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M23, 5' end.DH946050|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,209,489 - 98,210,602)(97,990,932 - 97,991,586)
sequence
gaattccaaacacacaaggcacagaaagtagccatacatttaactatccg
tatgcctgctggttgtaaccccgagtttgccgcagcacagaatagggtac
aaacctctccacttggcagacttttgtccattgcctctgctacgtctgta
ctaatgcaaggcgtggctgtgtaaaatcccctgttggtcctaagcaggcc
agcttgctgcatggtgaagccacaggctgttctcctcaggctcatccatg
atgcccgtctgctcatcgacacatcaatttttattttgagataatgaatg
catttttgagcaactttgagccatttaccaagctagatgcttttgtgtgt
ccccttctgaaaatgttttttccccagccaggtcctttctggaaaagagc
cactcccactgtatgtaactgtgacaacagcagagcaaagccatggctat
gttctcagaatcatttcccctgaaccctgggactcggagtctgaacagtg
gaagcaccgagagcagtgaacttcagcaccaggttaaaaaaaatgtgatg
cctttagtcctgggaatttcacaaaaccgatatgtagtgtgcatgccctg
aaggaaggcactttggctccagaggagcacaatttcaaagttgtcccact
tgaaaacgtccttgtaagattttgactctggccttgattaattttttctt
tctctttctttcttttttataattatttttattttatatgcattggcatt
ttgcctgcatatctgtctgtgtgggggtgctggattccctgaaactggag
tcacaaataggtgtgagcggccacgtgggtgctgggatttgaacctgggt
cctccgaagagtagccggtgctcccagaaggtatctccggagctagaggc
tctgctccagtgactcaggcaagctaatgttttttttttaggcgtgcatt
tttaagtagcggtgagaccctagaaagagggccagactcctcgccgtggt
ctgctaggcaaaggaaagggaaaattacgacttctctctccgtgttccca
aagaaacgtcaaggcatgaggaactacagcacgggtccgagtttatcctg
ccttgggctgttctgct
gaattccatagaaagcaagtcaataactaagtctgacgagacagagtgtt
ggagaatgtgcaggtactggctggatcagcgctttcctccctgagttgct
ttggtcatagtgagtcaacgaaggaaccctaactaagacagcgggctacg
agaactttcactctcttggttgatcggcagtgcgtttaccactggagagc
tgaagactacgattcagcaaatccagccatgcataaagtttagaggacta
aacctgtgttataaacaccaggagacacacaccaggataacccacagcag
gactgcctcagcaggagcactccctaacaggagagtgtggataaaataca
aggtgggagagtgggagaagtcatttctctcatcacccctgccctgcccc
catccggccccaccctgaagccccaccaagagcttgttgtctggttatct
gatcccaaatggtcagccctgaaaatatacagataagtaacagtatacag
actgagctggttgtgcttacacacacacacacacacacacacacacacac
acacacacacacctatttgaaaaacagggagggccgggaacttgaaagag
agtaaaggagccgtatgggaggctttggaggaaggacggggagggggaaa
aggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98209489_98210602
seq2: B6Ng01-149M23.b_48_1164 (reverse)

seq1  AGCAG-ACAGCCCAA-GCAGGATAAACTCGGGGACCGTGCTGTGGTTCCT  48
      ||||| ||||||||| ||||||||||||| ||  ||||||||| ||||||
seq2  AGCAGAACAGCCCAAGGCAGGATAAACTC-GGACCCGTGCTGTAGTTCCT  49

seq1  CATTGCCTTTGACGTTTCTTTTGGAACAC-GAGAGAGAAGTCGGTAATAT  97
      || |||| ||||||||||||| ||||||| |||||||||||||  | | |
seq2  CA-TGCC-TTGACGTTTCTTTGGGAACACGGAGAGAGAAGTCGTAATTTT  97

seq1  CCC-TTCCTTTGCCTAGCAGA-CAC-GCGA-GTGTCTGGCCCTCTTTCTT  143
      ||| ||||||||||||||||| ||| |||| | ||||||||||||||| |
seq2  CCCTTTCCTTTGCCTAGCAGACCACGGCGAGGAGTCTGGCCCTCTTTC-T  146

seq1  AGGGTCTCA-CGCTACTTAAAAATGCACGCCTAAAAAAAAAACATTAGCT  192
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCACCGCTACTTAAAAATGCACGCCTAAAAAAAAAACATTAGCT  196

seq1  TGCCTGAGTCACTGGAGCAGAGCCTCTAGCTCCGGAGATACCTTCTTGGG  242
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCCTGAGTCACTGGAGCAGAGCCTCTAGCTCCGGAGATACCTTC-TGGG  245

seq1  AGCACCGGCTACTCTTCGGAGGACCCAGGTTCAAATCCCAGCACCCACGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGGCTACTCTTCGGAGGACCCAGGTTCAAATCCCAGCACCCACGT  295

seq1  GGCCGCTCACACCTATTTGTGACTCCAGTTTCAGGGAATCCAGCACCCCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCTCACACCTATTTGTGACTCCAGTTTCAGGGAATCCAGCACCCCC  345

seq1  ACACAGACAGATATGCAGGCAAAATGCCAATGCATATAAAATAAAAATAA  392
      ||||||||||||||||||||||||||||||||||||||||||        
seq2  ACACAGACAGATATGCAGGCAAAATGCCAATGCATATAAAATNNNNNNNN  395

seq1  TTATAAAAAAGAAAGAAAGAGAAAGAAAAAATTAATCAAGGCCAGAGTCA  442
               |||||||||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNAGAAAGAAAGAGAAAGAAAAAATTAATCAAGGCCAGAGTCA  445

seq1  AAATCTTACAAGGACGTTTTCAAGTGGGACAACTTTGAAATTGTGCTCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTACAAGGACGTTTTCAAGTGGGACAACTTTGAAATTGTGCTCCT  495

seq1  CTGGAGCCAAAGTGCCTTCCTTCAGGGCATGCACACTACATATCGGTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCAAAGTGCCTTCCTTCAGGGCATGCACACTACATATCGGTTTT  545

seq1  GTGAAATTCCCAGGACTAAAGGCATCACATTTTTTTTAACCTGGTGCTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTCCCAGGACTAAAGGCATCACATTTTTTTTAACCTGGTGCTGA  595

seq1  AGTTCACTGCTCTCGGTGCTTCCACTGTTCAGACTCCGAGTCCCAGGGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTGCTCTCGGTGCTTCCACTGTTCAGACTCCGAGTCCCAGGGTT  645

seq1  CAGGGGAAATGATTCTGAGAACATAGCCATGGCTTTGCTCTGCTGTTGTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAATGATTCTGAGAACATAGCCATGGCTTTGCTCTGCTGTTGTC  695

seq1  ACAGTTACATACAGTGGGAGTGGCTCTTTTCCAGAAAGGACCTGGCTGGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACATACAGTGGGAGTGGCTCTTTTCCAGAAAGGACCTGGCTGGG  745

seq1  GAAAAAACATTTTCAGAAGGGGACACACAAAAGCATCTAGCTTGGTAAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACATTTTCAGAAGGGGACACACAAAAGCATCTAGCTTGGTAAAT  795

seq1  GGCTCAAAGTTGCTCAAAAATGCATTCATTATCTCAAAATAAAAATTGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAGTTGCTCAAAAATGCATTCATTATCTCAAAATAAAAATTGAT  845

seq1  GTGTCGATGAGCAGACGGGCATCATGGATGAGCCTGAGGAGAACAGCCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGATGAGCAGACGGGCATCATGGATGAGCCTGAGGAGAACAGCCTG  895

seq1  TGGCTTCACCATGCAGCAAGCTGGCCTGCTTAGGACCAACAGGGGATTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCACCATGCAGCAAGCTGGCCTGCTTAGGACCAACAGGGGATTTT  945

seq1  ACACAGCCACGCCTTGCATTAGTACAGACGTAGCAGAGGCAATGGACAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCACGCCTTGCATTAGTACAGACGTAGCAGAGGCAATGGACAAA  995

seq1  AGTCTGCCAAGTGGAGAGGTTTGTACCCTATTCTGTGCTGCGGCAAACTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCAAGTGGAGAGGTTTGTACCCTATTCTGTGCTGCGGCAAACTC  1045

seq1  GGGGTTACAACCAGCAGGCATACGGATAGTTAAATGTATGGCTACTTTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTACAACCAGCAGGCATACGGATAGTTAAATGTATGGCTACTTTCT  1095

seq1  GTGCCTTGTGTGTTTGGAATTC  1114
      ||||||||||||||||||||||
seq2  GTGCCTTGTGTGTTTGGAATTC  1117

seq1: chr15_97990932_97991586
seq2: B6Ng01-149M23.g_69_724

seq1  GAATTCCATAGAAAGCAAGTCAATAACTAAGTCTGACGAGACAGAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAAAGCAAGTCAATAACTAAGTCTGACGAGACAGAGTGTT  50

seq1  GGAGAATGTGCAGGTACTGGCTGGATCAGCGCTTTCCTCCCTGAGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGTGCAGGTACTGGCTGGATCAGCGCTTTCCTCCCTGAGTTGCT  100

seq1  TTGGTCATAGTGAGTCAACGAAGGAACCCTAACTAAGACAGCGGGCTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATAGTGAGTCAACGAAGGAACCCTAACTAAGACAGCGGGCTACG  150

seq1  AGAACTTTCACTCTCTTGGTTGATCGGCAGTGCGTTTACCACTGGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCACTCTCTTGGTTGATCGGCAGTGCGTTTACCACTGGAGAGC  200

seq1  TGAAGACTACGATTCAGCAAATCCAGCCATGCATAAAGTTTAGAGGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTACGATTCAGCAAATCCAGCCATGCATAAAGTTTAGAGGACTA  250

seq1  AACCTGTGTTATAAACACCAGGAGACACACACCAGGATAACCCACAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGTTATAAACACCAGGAGACACACACCAGGATAACCCACAGCAG  300

seq1  GACTGCCTCAGCAGGAGCACTCCCTAACAGGAGAGTGTGGATAAAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCAGCAGGAGCACTCCCTAACAGGAGAGTGTGGATAAAATACA  350

seq1  AGGTGGGAGAGTGGGAGAAGTCATTTCTCTCATCACCCCTGCCCTGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGAGTGGGAGAAGTCATTTCTCTCATCACCCCTGCCCTGCCCC  400

seq1  CATCCGGCCCCACCCTGAAGCCCCACCAAGAGCTTGTTGTCTGGTTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGGCCCCACCCTGAAGCCCCACCAAGAGCTTGTTGTCTGGTTATCT  450

seq1  GATCCCAAATGGTCAGCCCTGAAAATATACAGATAAGTAACAGTATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAAATGGTCAGCCCTGAAAATATACAGATAAGTAACAGTATACAG  500

seq1  ACTGAGCTGGTTGTGCTTACACACACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTGGTTGTGCTTACACACACACACACACACACACACACACACAC  550

seq1  ACACACACACACCTATTTGAAAAACAGGGAGGGCCGGGAACTTGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACCTATTTGAAAAACAGGGAGGGCCGGGAACTTGAAAGAG  600

seq1  AGTAAAGGAGCCGTATGGGAGGCTTTGGAGGAAGGACGGGGAGGGGG-AA  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTAAAGGAGCCGTATGGGAGGCTTTGGAGGAAGGACGGGGAGGGGGAAA  650

seq1  AGGATG  655
      ||||||
seq2  AGGATG  656