BAC Information

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BAC

Clone NameB6Ng01-150K01
Chromosome15 (Build37)
Map Location 99,453,848 - 99,570,607
singlet/doubletdoublet
Overlap geneRacgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5
Upstream geneCacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6
Downstream geneLima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150K01.bB6Ng01-150K01.g
ACCDH946659DH946660
length1,0161,144
definitionDH946659|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K01, 5' end.DH946660|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,569,597 - 99,570,607)(99,453,848 - 99,454,998)
sequence
gaattcttgctgggtagaggcacatgcctttaatcccagccagcattcag
gaggcagagacaggtgaatttctgagttcaagacccacctacagagtggg
ttccaggatatacagagaaaccctgtcttgaaaaacagaacagcaaccaa
acagatgaattgctcagctaataggtagttctctggcagttttaagatta
attttagttgtgtgtgtgtgtctgtctgtctgtctgtccgtccgtccgtc
catgcgttgagttcaggtgcccacagaggccagaagagggtgccttggag
ctagagttaacaaatagttgagagccacctggcagaggtgctcttaagca
ctgggacacaggttaagaccctggggatggcagcacactggtcggcttgc
acggcctgccctgtgctgcctgccatctccatctctccatccctaggact
tcctgatgatgtttattcatcatatgattggcattatgctcaccactttc
tcctacgtcaacaacatggtgcgagtgggagcactcatcttctgtctgca
tgacttcgcagaccccttactggaagtaagagcccatcctggcattcatg
aatcctttctcccttttttgatatgtgactttctccccaactcatttttt
tatctttcacctaggctgccaagatggccaattatgccagacgtgagcgg
ctctgtaccacccttttttgtgatctttggcgcagctttttatagttttc
tcgtctagcaatcttcccatttgtggtaagtctcaaggctgtgagctgtg
gtaggtacctagtgatagcttctgcctgtttagatttttctattcccttc
ttgcctttagcatcactgagcctctgtggattctgcaggaccttggttgc
catgtgcagcttctgcaatgagccttccatcccttccgtgctctgctcct
cattctgtaccagcacagatgtgtggacccatgtccttctatatcatgga
ctaaaattacaagtca
gaattcagtgtgcagatgagggtgaccaactctttgcctctggccctcta
ttaccacacctagcccagatattacaaagagctggaagctcagggaaatg
gccccacggccaagctcctgaagaagcacaaactcggtcgggcagaactg
acctttaacgtctggtgtgcgtggtgttgagtttccattgcctcgctggc
tgtctatgttctcttggtccaccatcatgaactgattccagtactccaag
gggagagagagtaggcgctccaccacctaaagggcacagagccagcctta
ctgcaggttctgttgttggtgtgtttctcagtctctctgcagcccaggct
tgcctagaacttgtagaccaggctggggagatcctcccagcacagccggc
cactgcatgtgctcacccaccacgcaaggcttatttctgtcattgtgcca
cgttagtgcattgcaaagatcagaccttctgcatctgtgtgtgcacacca
tgaaccctaccttgagctgacgtttgatgtcctggaacattgtcactgga
tctggattgggcacagtatgggcaactattgtagggccaaagactttagc
tagattggcaatatccatcttagtgtctggactctgagacactctgaata
aaagattatattaagaaacattattcaggggaggtggggggaaaaaagaa
acatattattcctcttaatatacaccaaaatatacattctagaaaaaaca
actcactgtccacacactcttctccttggaagattccctagctctcagac
taagcatccgctgtactaacctctgtaggtggatcataaaggaaggctag
cgtgtccctgttgggcttggggcagctcactgacagcctggttacatggc
ggctgtgctgtgtcttcatctgttatctctgtgatgacagaaagcattaa
aggtccaggctcttccctggacagcagcttcaaggctatcgaccacaagg
cccacctatacacggagcttctgaacttctgatgcgttcatgacagacca
gactctagtttcataacaggtcaggtactggtccaacagttcatgagagg
tcagaacttcttaactcatttagagaaggcgactgggcaaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99569597_99570607
seq2: B6Ng01-150K01.b_47_1062 (reverse)

seq1  TGACTTGT-AGTCTAGGTCATGAGTATAGAAGGGACATGCGTGCACACAT  49
      |||||||| | | |||  ||||| ||||||| ||||||| || |||||||
seq2  TGACTTGTAATTTTAGTCCATGA-TATAGAA-GGACATGGGTCCACACAT  48

seq1  CTGTGCTGGT-CAGGATGAGGAGCAGAGCACGGAAGGGATGGGAGGCTCA  98
      |||||||||| ||| ||||||||||||||||||||||||||| |||||||
seq2  CTGTGCTGGTACAGAATGAGGAGCAGAGCACGGAAGGGATGGAAGGCTCA  98

seq1  CTGCAGACGCTGCACATGGCAACCAAGGTCCTGCAGAATCCACAGAGGCT  148
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAGCTGCACATGGCAACCAAGGTCCTGCAGAATCCACAGAGGCT  148

seq1  CAGTGATGCTAAAGGCAAGAAGGGAATAG-AAAATCTAAACAGGCAGAAG  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTGATGCTAAAGGCAAGAAGGGAATAGAAAAATCTAAACAGGCAGAAG  198

seq1  CTATCACTAGGTACCTACCACAGCTCACAGCCTTGAGACTTACCAC-AAT  246
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTATCACTAGGTACCTACCACAGCTCACAGCCTTGAGACTTACCACAAAT  248

seq1  GGGAAGATTGCTAGACGAG-AAACTAT-AAAAGCTGCGCCAAAGATCAC-  293
      ||||||||||||||||||| ||||||| ||||||||||||||||||||| 
seq2  GGGAAGATTGCTAGACGAGAAAACTATAAAAAGCTGCGCCAAAGATCACA  298

seq1  AAAAAGGGTGGTACAGAGCCGCTCACGTCTGGCATAATTGGCCATCTTGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGTGGTACAGAGCCGCTCACGTCTGGCATAATTGGCCATCTTGG  348

seq1  CAGCCTAGGTGAAAGATAAAAAAATGAGTTGGGGAGAAAGTCACATATCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGTGAAAGATAAAAAAATGAGTTGGGGAGAAAGTCACATATCA  398

seq1  AAAAAGGGAGAAAGGATTCATGAATGCCAGGATGGGCTCTTACTTCCAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGAGAAAGGATTCATGAATGCCAGGATGGGCTCTTACTTCCAGT  448

seq1  AAGGGGTCTGCGAAGTCATGCAGACAGAAGATGAGTGCTCCCACTCGCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCTGCGAAGTCATGCAGACAGAAGATGAGTGCTCCCACTCGCAC  498

seq1  CATGTTGTTGACGTAGGAGAAAGTGGTGAGCATAATGCCAATCATATGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTTGACGTAGGAGAAAGTGGTGAGCATAATGCCAATCATATGAT  548

seq1  GAATAAACATCATCAGGAAGTCCTAGGGATGGAGAGATGGAGATGGCAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACATCATCAGGAAGTCCTAGGGATGGAGAGATGGAGATGGCAGG  598

seq1  CAGCACAGGGCAGGCCGTGCAAGCCGACCAGTGTGCTGCCATCCCCAGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGGCAGGCCGTGCAAGCCGACCAGTGTGCTGCCATCCCCAGGG  648

seq1  TCTTAACCTGTGTCCCAGTGCTTAAGAGCACCTCTGCCAGGTGGCTCTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCTGTGTCCCAGTGCTTAAGAGCACCTCTGCCAGGTGGCTCTCA  698

seq1  ACTATTTGTTAACTCTAGCTCCAAGGCACCCTCTTCTGGCCTCTGTGGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTTAACTCTAGCTCCAAGGCACCCTCTTCTGGCCTCTGTGGGC  748

seq1  ACCTGAACTCAACGCATGGACGGACGGACGGACAGACAGACAGACAGACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACTCAACGCATGGACGGACGGACGGACAGACAGACAGACAGACA  798

seq1  CACACACACAACTAAAATTAATCTTAAAACTGCCAGAGAACTACCTATTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAACTAAAATTAATCTTAAAACTGCCAGAGAACTACCTATTA  848

seq1  GCTGAGCAATTCATCTGTTTGGTTGCTGTTCTGTTTTTCAAGACAGGGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAATTCATCTGTTTGGTTGCTGTTCTGTTTTTCAAGACAGGGTT  898

seq1  TCTCTGTATATCCTGGAACCCACTCTGTAGGTGGGTCTTGAACTCAGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATATCCTGGAACCCACTCTGTAGGTGGGTCTTGAACTCAGAAA  948

seq1  TTCACCTGTCTCTGCCTCCTGAATGCTGGCTGGGATTAAAGGCATGTGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGTCTCTGCCTCCTGAATGCTGGCTGGGATTAAAGGCATGTGCC  998

seq1  TCTACCCAGCAAGAATTC  1011
      ||||||||||||||||||
seq2  TCTACCCAGCAAGAATTC  1016

seq1: chr15_99453848_99454998
seq2: B6Ng01-150K01.g_67_1210

seq1  GAATTCAGTGTGCAGATGAGGGTGACCAACTCTTTGCCTCTGGCCCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGCAGATGAGGGTGACCAACTCTTTGCCTCTGGCCCTCTA  50

seq1  TTACCACACCTAGCCCAGATATTACAAAGAGCTGGAAGCTCAGGGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACACCTAGCCCAGATATTACAAAGAGCTGGAAGCTCAGGGAAATG  100

seq1  GCCCCACGGCCAAGCTCCTGAAGAAGCACAAACTCGGTCGGGCAGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACGGCCAAGCTCCTGAAGAAGCACAAACTCGGTCGGGCAGAACTG  150

seq1  ACCTTTAACGTCTGGTGTGCGTGGTGTTGAGTTTCCATTGCCTCGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACGTCTGGTGTGCGTGGTGTTGAGTTTCCATTGCCTCGCTGGC  200

seq1  TGTCTATGTTCTCTTGGTCCACCATCATGAACTGATTCCAGTACTCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTTCTCTTGGTCCACCATCATGAACTGATTCCAGTACTCCAAG  250

seq1  GGGAGAGAGAGTAGGCGCTCCACCACCTAAAGGGCACAGAGCCAGCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAGTAGGCGCTCCACCACCTAAAGGGCACAGAGCCAGCCTTA  300

seq1  CTGCAGGTTCTGTTGTTGGTGTGTTTCTCAGTCTCTCTGCAGCCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTTCTGTTGTTGGTGTGTTTCTCAGTCTCTCTGCAGCCCAGGCT  350

seq1  TGCCTAGAACTTGTAGACCAGGCTGGGGAGATCCTCCCAGCACAGCCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAACTTGTAGACCAGGCTGGGGAGATCCTCCCAGCACAGCCGGC  400

seq1  CACTGCATGTGCTCACCCACCACGCAAGGCTTATTTCTGTCATTGTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATGTGCTCACCCACCACGCAAGGCTTATTTCTGTCATTGTGCCA  450

seq1  CGTTAGTGCATTGCAAAGATCAGACCTTCTGCATCTGTGTGTGCACACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTGCATTGCAAAGATCAGACCTTCTGCATCTGTGTGTGCACACCA  500

seq1  TGAACCCTACCTTGAGCTGACGTTTGATGTCCTGGAACATTGTCACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTACCTTGAGCTGACGTTTGATGTCCTGGAACATTGTCACTGGA  550

seq1  TCTGGATTGGGCACAGTATGGGCAACTATTGTAGGGCCAAAGACTTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGGGCACAGTATGGGCAACTATTGTAGGGCCAAAGACTTTAGC  600

seq1  TAGATTGGCAATATCCATCTTAGTGTCTGGACTCTGAGACACTCTGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGCAATATCCATCTTAGTGTCTGGACTCTGAGACACTCTGAATA  650

seq1  AAAGATTATATTAAGAAACATTATTCAGGGGAGGTGGGGGGAAAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATATTAAGAAACATTATTCAGGGGAGGTGGGGGGAAAAAAGAA  700

seq1  ACATATTATTCCTCTTAAATATACACCAAAATATACATTCTAGAAAAAAC  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATATTATTCCTCTT-AATATACACCAAAATATACATTCTAGAAAAAAC  749

seq1  AACTCACTGTCCACACACTCTTCTCCTTGGAAGATTCCCTAGCTCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTGTCCACACACTCTTCTCCTTGGAAGATTCCCTAGCTCTCAGA  799

seq1  CTAAGCATCCGCTGTACTAACCTCTGTAGGTGGATCAT-AAGGAAGGCTA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAAGCATCCGCTGTACTAACCTCTGTAGGTGGATCATAAAGGAAGGCTA  849

seq1  GCGTGTCCCTGTT-GGCCTGGGGCAGCTCACTGACAGCCTGG-TACATGG  897
      ||||||||||||| ||| |||||||||||||||||||||||| |||||||
seq2  GCGTGTCCCTGTTGGGCTTGGGGCAGCTCACTGACAGCCTGGTTACATGG  899

seq1  CGGCTGTGCTGTTGTCTTCATCTGTTATCTCTGTGATGACAAGAAAGCAT  947
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CGGCTGTGCTG-TGTCTTCATCTGTTATCTCTGTGATGAC-AGAAAGCAT  947

seq1  TAAAGGTCCAGGCTCTTCCCTGGACAGCAGCTTCAAGGCTATCGACCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAGGTCCAGGCTCTTCCCTGGACAGCAGCTTCAAGGCTATCGACCAC-  996

seq1  AAGGCCCACCTATACACGGAGCTTCTGAAACTTCTGATGCGGTTCATGAC  1047
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AAGGCCCACCTATACACGGAGCTTCTG-AACTTCTGATGC-GTTCATGAC  1044

seq1  AGCACCAGACTCTAGTTTCATTAACAGG-CAGGACACTGG-CCAACAGTT  1095
      || ||||||||||||||||| ||||||| ||||  ||||| |||||||||
seq2  AG-ACCAGACTCTAGTTTCA-TAACAGGTCAGG-TACTGGTCCAACAGTT  1091

seq1  CAATGAGAAGTCAGAACTTCCTAAAACTCAGTTAAGAGAAAGCAGCT-GG  1144
      | |||||| ||||||||||| |  |||||| || |||||| ||  || ||
seq2  C-ATGAGAGGTCAGAACTTCTT--AACTCA-TTTAGAGAAGGCGACTGGG  1137

seq1  CAACCCA  1151
      |||||||
seq2  CAACCCA  1144