BAC Information

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BAC

Clone NameB6Ng01-150K24
Chromosome15 (Build37)
Map Location 102,217,658 - 102,367,116
singlet/doubletdoublet
Overlap geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7
Upstream geneKrt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150K24.bB6Ng01-150K24.g
ACCDH946705DH946706
length6381,083
definitionDH946705|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K24, 5' end.DH946706|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,217,658 - 102,218,292)(102,366,026 - 102,367,116)
sequence
gaattcatcaccttcctgcttcagcctcctgagtgttgagattactgagt
ctacttgtcatgtttgaagcaaagaattcaagtctaatacacacggatga
tgtgtctgcctttcttccttccttcctttctttttctcttaaagatttta
tttatttatttatttatttatttattttgagacagggtttctttttttta
ttttttatttttttggtttttcgagacagggtttcttggtgtagccctgg
ctgtcctggcactcactttgtagaccaggctgtcctggaactcagaaatc
cacctgcctctgctgggattaaagacatgcgccagaacgccgggcttctg
gcttcttcttcttctttttttttttttaaaagatttatttattatatgta
agtacactgtagctgttttcagacgcaccagaagagggcatcagatctct
gttacaggtggttgtgagccaccatgtggttgctgggatttgaacttcgg
acctttggaagagcagtcgggtgctcttaccccctgagccatctcaccag
cccctctttttttttttttttaagatttatttattattatacattaattc
actggtagctgaacttcagacacctccagaagagggca
gaattcaagcccatcctgagagactttgtctcaaaaatacaaacaaaaaa
agaagggagggaagggtcaggcttggtggtccacacctggaatcccagta
ctcaagaagcagaagtgggaggattattgtaaattcaaggtcaccctgat
ctatgtcatgaatcccaggactgccagaatacatagagagacctgcctca
aacacagacagtgtgactgtatggggcagtatcattggaatgagatgggg
aagaatttggaacatttacacccagtcttggtaataacaaggacttcaac
tttgcagaccagagggtgcaaagcataggtacaatatgaaggatctgata
ctctgctagagatcagggatatacgtgttcttcagtatgcagtcaatata
taattttctactcagtccttataataactcttattggtgcttagtccatt
aaactacatatttattaccacaaagatgtgtttaactattactttgtgac
atccacattgtataggtacttgacataagacattgtctctacctctcaga
gatatattgggtcattgtgaacctgtgaatgagaaaggacagatagggcc
ccttgaggactcctggacggggagcttctgctgtgtaccccagtaccctc
acatgtaaacgatgctcagcaagtgtctgtggagtgagtgagtgtgtgct
ctgaaagcacaggtgacaagacagtttcctggggtaacaaggaagtgttt
actgaagaagcagtatttgaatcttcttgaaccatttgaaagatgactga
gactgtcatcaagagatggacataccaaactcagacgtggcgatacacac
gagtacaattagagctcttgggaggcaaaggcaagactgagatttgaagc
cagcttgggctacatgaaacaccatcacaaaaagacagacaaacatacac
ttactggaaattttcctaatttcgtacatctctttgaagcagctatagag
actaacatttagtaaactacattacctttttatgcagcttaggatgttgt
gtaatgtcaataaaatgttattgtcaccttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102217658_102218292
seq2: B6Ng01-150K24.b_44_681

seq1  GAATTCATCACCTTCCTGCTTCAGCCTCCTGAGTGTTGAGATTACTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACCTTCCTGCTTCAGCCTCCTGAGTGTTGAGATTACTGAGT  50

seq1  CTACTTGTCATGTTTGAAGCAAAGAATTCAAGTCTAATACACACGGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTCATGTTTGAAGCAAAGAATTCAAGTCTAATACACACGGATGA  100

seq1  TGTGTCTGCCTTTCTTCCTTCCTTCCTTTCTTTTTCTCTTAAAGATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGCCTTTCTTCCTTCCTTCCTTTCTTTTTCTCTTAAAGATTTTA  150

seq1  TTTATTTATTTATTTATTTATTTATTTTGAGACAGGGTTTCTTTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTTGAGACAGGGTTTCTTTTTTTTA  200

seq1  TTTTTTATTTTTTTGGTTTTTCGAGACAGGGTTTCTTGGTGTAGCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTTGGTTTTTCGAGACAGGGTTTCTTGGTGTAGCCCTGG  250

seq1  CTGTCCTGGCACTCACTTTGTAGACCAGGCTGTCCTGGAACTCAGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGCACTCACTTTGTAGACCAGGCTGTCCTGGAACTCAGAAATC  300

seq1  CACCTGCCTCTGCTGGGATTAAAGACATGCGCCAGAACGCCGGGCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCTGGGATTAAAGACATGCGCCAGAACGCCGGGCTTCTG  350

seq1  GCTTCTTCTTCTTCTTTTTTTTTTTTTAAAAGATTTATTTATTATATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCTTCTTCTTTTTTTTTTTTTAAAAGATTTATTTATTATATGTA  400

seq1  AGTACACTGTAGCTGTTTTCAGACGCACCAGAAGAGGGCATCAGATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGTAGCTGTTTTCAGACGCACCAGAAGAGGGCATCAGATCTCT  450

seq1  GTTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGG  500

seq1  ACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCCCTGAGCCATCTCACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCCCTGAGCCATCTCACCAG  550

seq1  CCCCTCTTTTTTTTTTTTTTTAAGATTTATTTATTATTATACATAAATTC  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCCTCTTTTTTTTTTTTTTTAAGATTTATTTATTATTATACATTAATTC  600

seq1  ACT-GTAGCTG-ACTTCAGACA-CACCAGAAGAGGGCA  635
      ||| ||||||| |||||||||| | |||||||||||||
seq2  ACTGGTAGCTGAACTTCAGACACCTCCAGAAGAGGGCA  638

seq1: chr15_102366026_102367116
seq2: B6Ng01-150K24.g_67_1149 (reverse)

seq1  TCTAAAGTGACAATAACATTTTATTGACATTTACACAACAT-CTTAGCTG  49
      ||||| ||||||||||||||||||||||| ||||||||||| || |||||
seq2  TCTAAGGTGACAATAACATTTTATTGACA-TTACACAACATCCTAAGCTG  49

seq1  CATAAAAAGGTAATGGTAGTTTTACTAAATGTTAGTCTCTATAGCTGCTT  99
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  CATAAAAAGGTAAT-GTAG-TTTACTAAATGTTAGTCTCTATAGCTGCTT  97

seq1  CAACAGAGATGTACGAAATTAGGGAAAATTTCCAGTAAGTGTATTGTTTT  149
      ||| ||||||||||||||||| ||||||||||||||||||||||   |||
seq2  CAA-AGAGATGTACGAAATTA-GGAAAATTTCCAGTAAGTGTAT--GTTT  143

seq1  GTCTTGTCTTTTTGTGATGGTGTTTCATGTAGCCCAAGCTGGCTTCAAAT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTC-TGTCTTTTTGTGATGGTGTTTCATGTAGCCCAAGCTGGCTTCAAA-  191

seq1  TCTCAGTCTTGCCTTTGCCTCCCAAGAGCTCTAATTGTACTCGTGTGTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCTTGCCTTTGCCTCCCAAGAGCTCTAATTGTACTCGTGTGTAT  241

seq1  CGCCACGTCTGAGTTTGGTATGTCCATCTCTTGATGACAGTCTCAGTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACGTCTGAGTTTGGTATGTCCATCTCTTGATGACAGTCTCAGTCAT  291

seq1  CTTTCAAATGGTTCAAGAAGATTCAAATACTGCTTCTTCAGTAAACACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATGGTTCAAGAAGATTCAAATACTGCTTCTTCAGTAAACACTT  341

seq1  CCTTGTTACCCCAGGAAACTGTCTTGTCACCTGTGCTTTCAGAGCACACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTACCCCAGGAAACTGTCTTGTCACCTGTGCTTTCAGAGCACACA  391

seq1  CTCACTCACTCCACAGACACTTGCTGAGCATCGTTTACATGTGAGGGTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACTCCACAGACACTTGCTGAGCATCGTTTACATGTGAGGGTAC  441

seq1  TGGGGTACACAGCAGAAGCTCCCCGTCCAGGAGTCCTCAAGGGGCCCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACACAGCAGAAGCTCCCCGTCCAGGAGTCCTCAAGGGGCCCTAT  491

seq1  CTGTCCTTTCTCATTCACAGGTTCACAATGACCCAATATATCTCTGAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTCTCATTCACAGGTTCACAATGACCCAATATATCTCTGAGAG  541

seq1  GTAGAGACAATGTCTTATGTCAAGTACCTATACAATGTGGATGTCACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGACAATGTCTTATGTCAAGTACCTATACAATGTGGATGTCACAAA  591

seq1  GTAATAGTTAAACACATCTTTGTGGTAATAAATATGTAGTTTAATGGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGTTAAACACATCTTTGTGGTAATAAATATGTAGTTTAATGGACT  641

seq1  AAGCACCAATAAGAGTTATTATAAGGACTGAGTAGAAAATTATATATTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAATAAGAGTTATTATAAGGACTGAGTAGAAAATTATATATTGA  691

seq1  CTGCATACTGAAGAACACGTATATCCCTGATCTCTAGCAGAGTATCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACTGAAGAACACGTATATCCCTGATCTCTAGCAGAGTATCAGAT  741

seq1  CCTTCATATTGTACCTATGCTTTGCACCCTCTGGTCTGCAAAGTTGAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATATTGTACCTATGCTTTGCACCCTCTGGTCTGCAAAGTTGAAGT  791

seq1  CCTTGTTATTACCAAGACTGGGTGTAAATGTTCCAAATTCTTCCCCATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTATTACCAAGACTGGGTGTAAATGTTCCAAATTCTTCCCCATCT  841

seq1  CATTCCAATGATACTGCCCCATACAGTCACACTGTCTGTGTTTGAGGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAATGATACTGCCCCATACAGTCACACTGTCTGTGTTTGAGGCAG  891

seq1  GTCTCTCTATGTATTCTGGCAGTCCTGGGATTCATGACATAGATCAGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTATGTATTCTGGCAGTCCTGGGATTCATGACATAGATCAGGGT  941

seq1  GACCTTGAATTTACAATAATCCTCCCACTTCTGCTTCTTGAGTACTGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAATTTACAATAATCCTCCCACTTCTGCTTCTTGAGTACTGGGA  991

seq1  TTCCAGGTGTGGACCACCAAGCCTGACCCTTCCCTCCCTTCTTTTTTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGTGGACCACCAAGCCTGACCCTTCCCTCCCTTCTTTTTTTGT  1041

seq1  TTGTATTTTTGAGACAAAGTCTCTCAGGATGGGCTTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTTGAGACAAAGTCTCTCAGGATGGGCTTGAATTC  1083