BAC Information

Click to search

BAC

Clone NameB6Ng01-150L08
Chromosome15 (Build37)
Map Location 20,801,311 - 20,949,291
singlet/doubletdoublet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12, LOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L08.bB6Ng01-150L08.g
ACCDH946719DH946720
length1,1611,056
definitionDH946719|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L08, 5' end.DH946720|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,801,311 - 20,802,462)(20,948,226 - 20,949,291)
sequence
gaattcactgttgcagcttcttgaccctgacatttataggacacaaagtt
tagtagcaaacttttggttttcctggctcttccgatctttctacctactt
tcctgaaaagatccctgagccttggatatagtagttgtaatcgatatgta
tcaattgggacttgacaccacaaatcaattctactcaggacttttaaaaa
ttatttgttcaatttagttgacaaattatattttcatatgaaatattctt
atcatgttttcctgtcccactattcctccttcccaacatgagaacacctc
aacttcatacttctttcctttaaagacacacaaaaatataaataaaaagt
aaagaaaaacaataaaacattcgccccttcaccacacaacacaaacagaa
atagcaatgtacaattaaaagacccaaaacaccaaaccacccaaacattc
cttgaaaaataaaactgttttgtcttccttcaagagtcattcacacctta
cacttcctcatctggcatggggccttggtaaatttatcccatctatgggt
ataggttggttgaataagtccagtttacaggtcttatgtatggtgccata
atgttgagagatccctagaacattgcaactgttctatccagtaaaattca
tcttctagcaattgtccaggtttcaagctcttttattctttctattcctt
cttctaccaaattccctgagccttaaatgtagggcatgtgttatatatgt
ctcaattcaatccatgtccctacaacttattctttgcctttcaaccagtt
gtgggttttctgtgatgcttttccatctactgcaagaatgatctattttt
ttttcttttttcaatgatcagtatgagctacacttccttgtgggtatatg
gataaatatttagaatgcagatataacagtctgatccatttagtcagtgt
gatataactggctgtatgtagacatttgtgcaggtcacttagttgtttca
agcatatgagaaatagtgtctggtctcttcttttctttctcaagtacctt
tgctggccaatcttacttcagagtaagttctaagtaatcctgggaccatg
agaaaggtttaggatgacctcatgtcctgccctcacattgcctatttgga
cttgaaaatag
gaattctgaacatttagtgtgtgcaataaatgttgaagtattttttgttt
gtaaatacaacaaattctgataatttattaatttattaaattctgataat
ttattaagatgaaactactttcttttgaaaaacaaagttttgattaagca
tttattgttcttgtatatgccagtagttagtttctgtgatggtaattgat
atttatatgtaacttaggtgtcaaatatattgagtgtagtaggaaagtag
tatgagaagaaattatacaagaaagaattatttaggggagatattgtcag
taatggctatgaattggaatcattattaagtgaaaataaatattctgtgt
acttgaaaatttagtaatcaaattaattataaaacaatatacatcaactc
atttgttaaataatatttcattactaatgttcactagtaaattcaatatt
atcttttattttctaacatagttattgggaatattaataattttcttttg
tatgattatatgtttaaaattttctgttagtttaaattttaaactcttta
tctgagttttactcatgttttacattagatcaatgaataagttttgcaaa
ttaacagttattcaatccgcattccctgttaaaattatattacattttaa
ttattgataattcattaaaaattaattgacaattttggcaacaaaaattt
atgataatattttgttatttgtaccctttacatatagtaaaaaggaattc
ctagcaaaaaaaaaaaaaaaaaaagaattccatgtataatttttcatgta
attcttgttaggaaacacaagaaatttgaagcgaactgtttaagaaacgc
ctcataatacagggatttttgaataaacatatgggaagatgagtgactga
catacctacatctgagtgacagagactaatttgccgaaaagatataaaga
aatatttactgtaaatgacatacaatgtaggtgtacttggtagaggaaac
acggagatgggatagcagaggttgaaatacttcatattacagccactaat
tattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20801311_20802462
seq2: B6Ng01-150L08.b_46_1206

seq1  GAATTCACTGTTGCAGCTTCTTGACCCTGACATTTATAGGACACAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTGCAGCTTCTTGACCCTGACATTTATAGGACACAAAGTT  50

seq1  TAGTAGCAAACTTTTGGTTTTCCTGGCTCTTCCGATCTTTCTACCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCAAACTTTTGGTTTTCCTGGCTCTTCCGATCTTTCTACCTACTT  100

seq1  TCCTGAAAAGATCCCTGAGCCTTGGATATAGTAGTTGTAATCGATATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAAGATCCCTGAGCCTTGGATATAGTAGTTGTAATCGATATGTA  150

seq1  TCAATTGGGACTTGACACCACAAATCAATTCTACTCAGGACTTTTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGGACTTGACACCACAAATCAATTCTACTCAGGACTTTTAAAAA  200

seq1  TTATTTGTTCAATTTAGTTGACAAATTATATTTTCATATGAAATATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTCAATTTAGTTGACAAATTATATTTTCATATGAAATATTCTT  250

seq1  ATCATGTTTTCCTGTCCCACTATTCCTCCTTCCCAACATGAGAACACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTTCCTGTCCCACTATTCCTCCTTCCCAACATGAGAACACCTC  300

seq1  AACTTCATACTTCTTTCCTTTAAAGACACACAAAAATATAAATAAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATACTTCTTTCCTTTAAAGACACACAAAAATATAAATAAAAAGT  350

seq1  AAAGAAAAACAATAAAACATTCGCCCCTTCACCACACAACACAAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACAATAAAACATTCGCCCCTTCACCACACAACACAAACAGAA  400

seq1  ATAGCAATGTACAATTAAAAGACCCAAAACACCAAACCACCCAAACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATGTACAATTAAAAGACCCAAAACACCAAACCACCCAAACATTC  450

seq1  CTTGAAAAATAAAACTGTTTTGTCTTCCTTCAAGAGTCATTCACACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAATAAAACTGTTTTGTCTTCCTTCAAGAGTCATTCACACCTTA  500

seq1  CACTTCCTCATCTGGCATGGGGCCTTGGTAAATTTATCCCATCTATGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCATCTGGCATGGGGCCTTGGTAAATTTATCCCATCTATGGGT  550

seq1  ATAGGTTGGTTGAATAAGTCCAGTTTACAGGTCTTATGTATGGTGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTGGTTGAATAAGTCCAGTTTACAGGTCTTATGTATGGTGCCATA  600

seq1  ATGTTGAGAGATCCCTAGAACATTGCAACTGTTCTATCCAGTAAAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAGAGATCCCTAGAACATTGCAACTGTTCTATCCAGTAAAATTCA  650

seq1  TCTTCTAGCAATTGTCCAGGTTTCAAGCTCTTTTATTCTTTCTATTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGCAATTGTCCAGGTTTCAAGCTCTTTTATTCTTTCTATTCCTT  700

seq1  CTTCTACCAAATTCCCTGAGCCTTAAATGTAGGGCATGTGTTATATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCAAATTCCCTGAGCCTTAAATGTAGGGCATGTGTTATATATGT  750

seq1  CTCAATTCAATCCATGTCCCTACAACTTATTCTTTGCCTTTCAACCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCAATCCATGTCCCTACAACTTATTCTTTGCCTTTCAACCAGTT  800

seq1  GTGGGTTTTCTGTGATGC-TTTCCATCTACTGCAAGAATGATCTA-TTTT  848
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GTGGGTTTTCTGTGATGCTTTTCCATCTACTGCAAGAATGATCTATTTTT  850

seq1  TTTTCTTTTTTCAATGATCAGTATGAGCTACACTTCCTTGTGGGTATATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTCAATGATCAGTATGAGCTACACTTCCTTGTGGGTATATG  900

seq1  GATAAATATTTAGAATGCAGATATAACAGTCTGATCCATTTAGTCAGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATATTTAGAATGCAGATATAACAGTCTGATCCATTTAGTCAGTGT  950

seq1  GATATAACTGGCTGTATGTAGACATTTGTGCAGGTCACTTAGTTGTTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAACTGGCTGTATGTAGACATTTGTGCAGGTCACTTAGTTGTTTCA  1000

seq1  AGCATATGAG-AATAGTTGTCTGGTCTCTCCTCT--CTTCTCAGGTACCT  1045
      |||||||||| ||||| |||||||||||| || |   |||||| ||||||
seq2  AGCATATGAGAAATAG-TGTCTGGTCTCTTCTTTTCTTTCTCAAGTACCT  1049

seq1  TTGCTGGCCAATC-TAC-TCAGAGTAAGTTTCCTAAGTATTCCCTGGGAC  1093
      ||||||||||||| ||| ||||||||||||  ||||||| | ||||||||
seq2  TTGCTGGCCAATCTTACTTCAGAGTAAGTT--CTAAGTAAT-CCTGGGAC  1096

seq1  CATGAG-AAGTTTTAGGATGA-CTCATGT-CTG-CCTCACATTG-CTAAT  1138
      |||||| ||| |||||||||| ||||||| ||| |||||||||| ||| |
seq2  CATGAGAAAGGTTTAGGATGACCTCATGTCCTGCCCTCACATTGCCTATT  1146

seq1  TTGAC-TGAAAATAG  1152
      | ||| |||||||||
seq2  TGGACTTGAAAATAG  1161

seq1: chr15_20948226_20949291
seq2: B6Ng01-150L08.g_69_1124 (reverse)

seq1  AGAATAATTAGTGGCTGT-ATATGAAGTATTTCAACCTTCTGCTAATTCC  49
      |||||||||||||||||| |||||||||||||||||| |||||| || ||
seq2  AGAATAATTAGTGGCTGTAATATGAAGTATTTCAACC-TCTGCT-ATCCC  48

seq1  ATCTCTGTGTTTTCCTCTACCAAGTACACCTACATTGTATTTGTCATTTT  99
      ||||| ||| |||||||||||||||||||||||||||||  ||||| |||
seq2  ATCTCCGTG-TTTCCTCTACCAAGTACACCTACATTGTA--TGTCA-TTT  94

seq1  ACAGTAAATATTTTCTTTATATTCTTTTCGGCAAATTAGTTCTCTTGTCA  149
      |||||||||| |||||||||| ||||||||||||||||| |||| |||||
seq2  ACAGTAAATA-TTTCTTTATA-TCTTTTCGGCAAATTAG-TCTC-TGTCA  140

seq1  CTCAGATGTAGGTAATGTTCAGTCACTCATCTT-CCATATGTTTTTATTC  198
      ||||||||||||| ||| ||||||||||||||| |||||||  |||||||
seq2  CTCAGATGTAGGT-ATG-TCAGTCACTCATCTTCCCATATG--TTTATTC  186

seq1  AAAATTCCCTGTA-TATGAGGCGTTTCTTAAACAGTTCGCTTCAAATTTC  247
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCTGTATTATGAGGCGTTTCTTAAACAGTTCGCTTCAAATTTC  236

seq1  TTGTGTTTCCTAACAAGAATTACATG-AAAATTATACATGGAATTCTTTT  296
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGTGTTTCCTAACAAGAATTACATGAAAAATTATACATGGAATTCTTTT  286

seq1  TTTTTTTTTTTTTTTGCTAGGAATTCCTTTTTACTATATGTAAAGGGTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGCTAGGAATTCCTTTTTACTATATGTAAAGGGTAC  336

seq1  AAATAACAAAATATTATCATAAATTTTTGTTGCCAAAATTGTCAATTAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAAAATATTATCATAAATTTTTGTTGCCAAAATTGTCAATTAAT  386

seq1  TTTTAATGAATTATCAATAATTAAAATGTAATATAATTTTAACAGGGAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGAATTATCAATAATTAAAATGTAATATAATTTTAACAGGGAAT  436

seq1  GCGGATTGAATAACTGTTAATTTGCAAAACTTATTCATTGATCTAATGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTGAATAACTGTTAATTTGCAAAACTTATTCATTGATCTAATGTA  486

seq1  AAACATGAGTAAAACTCAGATAAAGAGTTTAAAATTTAAACTAACAGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGTAAAACTCAGATAAAGAGTTTAAAATTTAAACTAACAGAAA  536

seq1  ATTTTAAACATATAATCATACAAAAGAAAATTATTAATATTCCCAATAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACATATAATCATACAAAAGAAAATTATTAATATTCCCAATAAC  586

seq1  TATGTTAGAAAATAAAAGATAATATTGAATTTACTAGTGAACATTAGTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGAAAATAAAAGATAATATTGAATTTACTAGTGAACATTAGTAA  636

seq1  TGAAATATTATTTAACAAATGAGTTGATGTATATTGTTTTATAATTAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTATTTAACAAATGAGTTGATGTATATTGTTTTATAATTAATT  686

seq1  TGATTACTAAATTTTCAAGTACACAGAATATTTATTTTCACTTAATAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTAAATTTTCAAGTACACAGAATATTTATTTTCACTTAATAATG  736

seq1  ATTCCAATTCATAGCCATTACTGACAATATCTCCCCTAAATAATTCTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTCATAGCCATTACTGACAATATCTCCCCTAAATAATTCTTTC  786

seq1  TTGTATAATTTCTTCTCATACTACTTTCCTACTACACTCAATATATTTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATTTCTTCTCATACTACTTTCCTACTACACTCAATATATTTGA  836

seq1  CACCTAAGTTACATATAAATATCAATTACCATCACAGAAACTAACTACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAGTTACATATAAATATCAATTACCATCACAGAAACTAACTACTG  886

seq1  GCATATACAAGAACAATAAATGCTTAATCAAAACTTTGTTTTTCAAAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACAAGAACAATAAATGCTTAATCAAAACTTTGTTTTTCAAAAGA  936

seq1  AAGTAGTTTCATCTTAATAAATTATCAGAATTTAATAAATTAATAAATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTTCATCTTAATAAATTATCAGAATTTAATAAATTAATAAATTA  986

seq1  TCAGAATTTGTTGTATTTACAAACAAAAAATACTTCAACATTTATTGCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTGTTGTATTTACAAACAAAAAATACTTCAACATTTATTGCAC  1036

seq1  ACACTAAATGTTCAGAATTC  1066
      ||||||||||||||||||||
seq2  ACACTAAATGTTCAGAATTC  1056