BAC Information

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BAC

Clone NameB6Ng01-151L11
Chromosome15 (Build37)
Map Location 18,929,444 - 19,074,240
singlet/doubletdoublet
Overlap geneCdh10, EG666857
Upstream geneLOC666835, LOC666839
Downstream geneEG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151L11.bB6Ng01-151L11.g
ACCDH947468DH947469
length1,0871,134
definitionDH947468|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L11, 5' end.DH947469|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,929,444 - 18,930,551)(19,073,091 - 19,074,240)
sequence
gaattcatgactatttagctgggtagtaattttctttattgcatttattc
attatgtaaaagaatagatgcaatgcatatttgtacgtaagcacctagta
tccataagttgcatatctaatttgaatctggcacactaatatatttttct
aaacatttttatttcctttctctagataatcctaaagagacaactcgtgt
gtctgtttttgtgaggattttggatgttaatgacaacgctccacaatttg
ctgtgttttatgacacatttgtatgtgaaaatgccagaccaggacaggtg
agcaactatacaactccaattcaggattattttagctctgtgtaaatgtg
tttttgtcaaaaccttggaaaggatgaaccagagtcagaaatatttacat
atattctcattagaagtttagaaaatggttgacgtttataatggtgacaa
cattttaacagtcaagttacccaattccttcaacaagttgtaatgcaata
aaataataatgagttcttactgtctaatagtaaaataattttaaaaaata
atatattgtctttctcataaaagttgaggtgtggataataactttaaatt
ttaaaactttgtgaattaagaacaaacactggaatctgctctgtgtcact
aacccaatattaataactatttagtaaaatggaagttggtgttaatacag
gttttaatatcagaacctggaccatgacagctccagccagctggtctctg
ccatgcattttgaactcaataagtaagaataaaagacagagaaacaagat
tttctcagtgtggccaagtttaaatgaagaaccaataaaaaaggcaagtg
acgcccgatgagtccacctttggagtggaaatgagagtttggttacaaag
aattcagcaagatgcataacgaagcagtctggtcaagagtggccctgcct
gccattgcacatctgtctcagttcagtgtcttactaatgtgtctgcgaga
tgtcaaagtgtgtaactatttcatggtgacaatttctctgtggctagcac
agaatgagcattcctctcacatgagatgcatggaaat
gaattcccctaattgctttaaattggacctgtgagctcacctgggtatct
ccatcttggtaaatagtacaccccaaagcccgcaccagcactatccatgc
tggacttctgaaaaatatactctttgcttttgcatactttttaatctggg
ctatcattctttgatgaatcatggatccttatgatggataaattgttaaa
aaaaatcccagtgtgtatacgtcaggttttattatataatagttccttaa
atcagtgtttcttgctggtctgtactgcactcaggaggcaaaggcaagtg
aatctctgagttcaaggccagcctaggcagtgatttccaggaatacacaa
aataacccagtctcaaaaaacaaagccaataaaagaagaacaagacaaac
aaaatactaacaaaagacaacaagaatctgtgttactttccagtggttaa
catatagtaatgacaatatttctttgaataagagccaaattatagatgtc
cttacagcttactcatgctacttactcagaataaagtgaaaattactcac
aagttgattttgcatggcaagggagaaataacaactgctggaaaataaaa
tttgtaaagtagatttatataaaatgtgtagagaaaggatctaatggtgg
ttatatgcaaatacttgtttcaaagtccttactagtaaggagttatttct
tcaagaatgcaattaaaatcatgaactttacatttcagttcagacattgg
ccatctatgcacaaataacccttaccagtgttaacgttaactgtctagga
gccttttgctctatcttgataggattatagatggtaagaagtatttccag
tagagcttttggtagtttctgcaacctttacctcttagtaacagtaacag
acagatgcaatcagctacaatgtagcttctaacacactcagcaagtactg
ggactcagtctgtagtagcatgtgtttttttttaatgggtatttatttca
ttacatttcatgctatccaaagtcccccacatgctccccaccaactctca
cccaccactccacttctaggccttgcatttccttaattgaggcatataaa
gttggacgaacatgggcctctcttttcactgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18929444_18930551
seq2: B6Ng01-151L11.b_46_1132

seq1  GAATTCATGACTATTTAGCTGGGTAGTAATTTTCTTTATTGCATTTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACTATTTAGCTGGGTAGTAATTTTCTTTATTGCATTTATTC  50

seq1  ATTATGTAAAAGAATAGATGCAATGCATATTTGTACGTAAGCACCTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAAAAGAATAGATGCAATGCATATTTGTACGTAAGCACCTAGTA  100

seq1  TCCATAAGTTGCATATCTAATTTGAATCTGGCACACTAATATATTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGTTGCATATCTAATTTGAATCTGGCACACTAATATATTTTTCT  150

seq1  AAACATTTTTATTTCCTTTCTCTAGATAATCCTAAAGAGACAACTCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTATTTCCTTTCTCTAGATAATCCTAAAGAGACAACTCGTGT  200

seq1  GTCTGTTTTTGTGAGGATTTTGGATGTTAATGACAACGCTCCACAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTTGTGAGGATTTTGGATGTTAATGACAACGCTCCACAATTTG  250

seq1  CTGTGTTTTATGACACATTTGTATGTGAAAATGCCAGACCAGGACAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTATGACACATTTGTATGTGAAAATGCCAGACCAGGACAGGTG  300

seq1  AGCAACTATACAACTCCAATTCAGGATTATTTTAGCTCTGTGTAAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTATACAACTCCAATTCAGGATTATTTTAGCTCTGTGTAAATGTG  350

seq1  TTTTTGTCAAAACCTTGGAAAGGATGAACCAGAGTCAGAAATATTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCAAAACCTTGGAAAGGATGAACCAGAGTCAGAAATATTTACAT  400

seq1  ATATTCTCATTAGAAGTTTAGAAAATGGTTGACGTTTATAATGGTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCATTAGAAGTTTAGAAAATGGTTGACGTTTATAATGGTGACAA  450

seq1  CATTTTAACAGTCAAGTTACCCAATTCCTTCAACAAGTTGTAATGCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACAGTCAAGTTACCCAATTCCTTCAACAAGTTGTAATGCAATA  500

seq1  AAATAATAATGAGTTCTTACTGTCTAATAGTAAAATAATTTTAAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATGAGTTCTTACTGTCTAATAGTAAAATAATTTTAAAAAATA  550

seq1  ATATATTGTCTTTCTCATAAAAGTTGAGGTGTGGATAATAACTTTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTCTTTCTCATAAAAGTTGAGGTGTGGATAATAACTTTAAATT  600

seq1  TTAAAACTTTGTGAATTAAGAACAAACACTGGAATCTGCTCTGTGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTTGTGAATTAAGAACAAACACTGGAATCTGCTCTGTGTCACT  650

seq1  AACCCAATATTAATAACTATTTAGTAAAATGGAAGTTGGTGTTAATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATATTAATAACTATTTAGTAAAATGGAAGTTGGTGTTAATACAG  700

seq1  GTTTTAATATCAGAACCTGGACCATGACAGCTCCAGCCAGCTGGTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATATCAGAACCTGGACCATGACAGCTCCAGCCAGCTGGTCTCTG  750

seq1  CCATGCATTTTGAACTCAATAAGTAAGAATAAAAGACAGAGAAACAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATTTTGAACTCAATAAGTAAGAATAAAAGACAGAGAAACAAGAT  800

seq1  TTTCTCAGTGTGGCCAAGTTTAAATGAAGAACCAATAAAAAAGGCAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTGTGGCCAAGTTTAAATGAAGAACCAATAAAAAAGGCAAGTG  850

seq1  ACGCCCGATGAGTCCACCTTTGGAGTGGAAATGAGAGTTTGGTTACAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCGATGAGTCCACCTTTGGAGTGGAAATGAGAGTTTGGTTACAAAG  900

seq1  AATTCAGGCAAGATGCATAACGAAGCAGTCTGGTCAAGAGTGGCCCTGCC  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCA-GCAAGATGCATAACGAAGCAGTCTGGTCAAGAGTGGCCCTGCC  949

seq1  TGCCATTGCCACATCCTTGTCTCAGTTTCAGTGTCTTACCTAATGTGGTC  1000
      |||||||| ||||||  |||||||| |||||||||||| ||||||| |||
seq2  TGCCATTG-CACATC--TGTCTCAG-TTCAGTGTCTTA-CTAATGT-GTC  993

seq1  TGCGAGATTGTCCAAAGTGTGTAAACTATTTCATGGTGACAAATTTCTCC  1050
      ||||||| ||| |||||||||| ||||||||||||||||| ||||||| |
seq2  TGCGAGA-TGT-CAAAGTGTGT-AACTATTTCATGGTGAC-AATTTCT-C  1038

seq1  TGTGGCTAGCACAGGAAATGAAGGCATTTTCTTCTCCAACATGAGATGCA  1100
      ||||||||||||||  |||||  |||  ||| ||||  ||||||||||||
seq2  TGTGGCTAGCACAG--AATGA--GCA--TTCCTCTC--ACATGAGATGCA  1080

seq1  TGGGAAAT  1108
      | ||||||
seq2  T-GGAAAT  1087

seq1: chr15_19073091_19074240
seq2: B6Ng01-151L11.g_68_1201 (reverse)

seq1  CATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAG  50
      |||||||| ||||||||||||| || |||| | |||||||||||||||| 
seq2  CATCAGTGAAAAGAGAGGCCCA-TGTTCGT-CCAACTTTATATGCCTCAA  48

seq1  TACAAGGGAATGCCAGGCCCAAGAAGTGGGAGTGGGTGGGTGGAGGAGTG  100
      |  |||| ||||| ||| || |||||| ||||| ||||||||   |||| 
seq2  T-TAAGGAAATGCAAGG-CCTAGAAGT-GGAGT-GGTGGGTG--AGAGTT  92

seq1  GGTGGGGGAGCATGTGGGGGACTTTTGGGATAGCATTGGAAATGTAAATG  150
      ||| |||||||||||||||||||||  |||||||||  ||||||| ||||
seq2  GGT-GGGGAGCATGTGGGGGACTTT--GGATAGCAT--GAAATGT-AATG  136

seq1  AAATAAATACCCAATTAAAAAAAAAACACATGCTACTACAGAACTGAGTC  200
      |||||||||||||  | |||||||||||||||||||||||| ||||||||
seq2  AAATAAATACCCA--TTAAAAAAAAACACATGCTACTACAG-ACTGAGTC  183

seq1  CCAGTACTTGCTGAGTGTGTTAG-AGCTACATTGTAGCTGATTGCATCTG  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGTACTTGCTGAGTGTGTTAGAAGCTACATTGTAGCTGATTGCATCTG  233

seq1  TCTGTTACTGTTACTAAGAGGTAAAGGTTGCAGAAACTACCAAAAGCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTGTTACTAAGAGGTAAAGGTTGCAGAAACTACCAAAAGCTCT  283

seq1  ACTGGAAATACTTCTTACCATCTATAATCCTATCAAGATAGAGCAAAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATACTTCTTACCATCTATAATCCTATCAAGATAGAGCAAAAGG  333

seq1  CTCCTAGACAGTTAACGTTAACACTGGTAAGGGTTATTTGTGCATAGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGACAGTTAACGTTAACACTGGTAAGGGTTATTTGTGCATAGATG  383

seq1  GCCAATGTCTGAACTGAAATGTAAAGTTCATGATTTTAATTGCATTCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTCTGAACTGAAATGTAAAGTTCATGATTTTAATTGCATTCTTG  433

seq1  AAGAAATAACTCCTTACTAGTAAGGACTTTGAAACAAGTATTTGCATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAACTCCTTACTAGTAAGGACTTTGAAACAAGTATTTGCATATA  483

seq1  ACCACCATTAGATCCTTTCTCTACACATTTTATATAAATCTACTTTACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATTAGATCCTTTCTCTACACATTTTATATAAATCTACTTTACAA  533

seq1  ATTTTATTTTCCAGCAGTTGTTATTTCTCCCTTGCCATGCAAAATCAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTCCAGCAGTTGTTATTTCTCCCTTGCCATGCAAAATCAACT  583

seq1  TGTGAGTAATTTTCACTTTATTCTGAGTAAGTAGCATGAGTAAGCTGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAATTTTCACTTTATTCTGAGTAAGTAGCATGAGTAAGCTGTAA  633

seq1  GGACATCTATAATTTGGCTCTTATTCAAAGAAATATTGTCATTACTATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTATAATTTGGCTCTTATTCAAAGAAATATTGTCATTACTATAT  683

seq1  GTTAACCACTGGAAAGTAACACAGATTCTTGTTGTCTTTTGTTAGTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCACTGGAAAGTAACACAGATTCTTGTTGTCTTTTGTTAGTATTT  733

seq1  TGTTTGTCTTGTTCTTCTTTTATTGGCTTTGTTTTTTGAGACTGGGTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTTGTTCTTCTTTTATTGGCTTTGTTTTTTGAGACTGGGTTAT  783

seq1  TTTGTGTATTCCTGGAAATCACTGCCTAGGCTGGCCTTGAACTCAGAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTATTCCTGGAAATCACTGCCTAGGCTGGCCTTGAACTCAGAGAT  833

seq1  TCACTTGCCTTTGCCTCCTGAGTGCAGTACAGACCAGCAAGAAACACTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCCTTTGCCTCCTGAGTGCAGTACAGACCAGCAAGAAACACTGA  883

seq1  TTTAAGGAACTATTATATAATAAAACCTGACGTATACACACTGGGATTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAACTATTATATAATAAAACCTGACGTATACACACTGGGATTTT  933

seq1  TTTTAACAATTTATCCATCATAAGGATCCATGATTCATCAAAGAATGATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAATTTATCCATCATAAGGATCCATGATTCATCAAAGAATGATA  983

seq1  GCCCAGATTAAAAAGTATGCAAAAGCAAAGAGTATATTTTTCAGAAGTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATTAAAAAGTATGCAAAAGCAAAGAGTATATTTTTCAGAAGTCC  1033

seq1  AGCATGGATAGTGCTGGTGCGGGCTTTGGGGTGTACTATTTACCAAGATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGATAGTGCTGGTGCGGGCTTTGGGGTGTACTATTTACCAAGATG  1083

seq1  GAGATACCCAGGTGAGCTCACAGGTCCAATTTAAAGCAATTAGGGGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACCCAGGTGAGCTCACAGGTCCAATTTAAAGCAATTAGGGGAATT  1133

seq1  C  1150
      |
seq2  C  1134