BAC Information

Click to search

BAC

Clone NameB6Ng01-152B17
Chromosome15 (Build37)
Map Location 28,526,702 - 28,639,840
singlet/doubletdoublet
Overlap geneLOC100040675, LOC100040689, LOC100040702
Upstream geneBC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5, EG382974
Downstream geneLOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152B17.bB6Ng01-152B17.g
ACCDH947763DH947764
length1,1811,115
definitionDH947763|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B17, 5' end.DH947764|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,526,702 - 28,527,886)(28,638,722 - 28,639,840)
sequence
gaattctttttcatcttcaccccctactttaaagttttcatcttagccag
tgtaaccttcaaatcttgtgtcttagcaaaagcttacatataaacagcac
ctactttcttgttctctcaaatgactccactgtctcaaatatccccttct
tcatatcaagctttgccccataatctggggattctgtcattttgaggcca
cacaacttctccatgtctatgttgtcttggtaatatattttgaatttcta
tttccaccacctcctctctgtcctctgggaagaactttccttaccatctt
ttctaccgcctttttagatatattttctaatgtaaacattaggacttcag
tgggttaaacgatggttgtgcaaatagttttgcaagtgttaaccctgagg
tctgttttccagttcattgatggtcatttatacacaatattattgggact
ttgctccagagatacacaagcttgataacattatttcctcttcaaatgca
tttcttctgaattcttatttctcttatggagcaggcttttatttctttag
ttcttaaggaaggccctgttgcttctaatattcactcacttctattgatg
aacttctacaatggctttgaagagagtcttcctatgtttattcctactgc
tactgccttggttcgtgtatctcttgcagagagcttagtattcaatagct
gcttatcatgtctctttctttcatcacctccaaacttcaatatcacacag
actgcctgagtccccctgaagcaaaaccctgctggtgctataatttggtg
ttaaaaatcatccaagtttcatcaaagtgctagactctagcagattttct
gaggaaatatcagcaaaagtccacgactgaaatcccccatccagaagatt
tttgatgtggaaaggtgaagccaggagatgatagtgaaggtggttatatt
gaattcactcctgccttcatgagatgggtgggaatgggagaccttcagtt
agtactcctgtgagtcactctataacctcattgtttgcccttcatatctg
ggaagacacttgcagatggtggctgatttctcttgaaaggagccacagca
acttccatggagaacagaagggtgttatcaggaccaatgcagtgtctcct
ctgggcgaaacatcacatgtttcaggcttga
gaattcattcattagttctcaaaccattgggtttggttgagtttggtgga
tttacatatcatgccataatcaactagaaacaattccacatactccttct
tccagatagatcacaagaatgatatttagtccattccaatcttcttactt
cccctcagaccttgatttttgtttcttaatttctactgtttttttttatt
ttgcaaatttccaccaaatcatctcatgaatctgtaaagataatagtcca
catgaaaaataaatttaatgaagcaaaatattttatgttaagacttcata
acttatgttccagatgtacccttttctttcttaaagattgatctgaaaat
gcataaattagaaagcaattaaaacaaagcactgaagcctaatgtcctag
gctatgtgtgtcctggttaaagctctttcacattacaactgcttcctcat
cctttgaattagaagctagaagattactacctaatcaacaatgaaaacta
acttttcaaaggatcattaatgctatgtagccaaatactttgacttgaaa
cattctctcgtgatggtagtgagaaggtctaaggaattgagaaataaata
aaaattagtaaagagccaagaagttataaaaaagttacaaaactaaaaag
gctgctccttgaagtcattaaatagtaaacacttgaagggactctggtgg
aacttcatgagttgtcaaccatactcctgtaaatagccccttacccttgt
gcttttaagtaacctgactaagtggttcagcaagatcaactttagtagtc
ttttatttgttctatcattgataccctatttgatgtgagctaatatctat
tcatttctccctgaaatattcacagaatttgtaaactcatgaataatttg
acaacctcatattgattccacctgactattaaaagtcatccttggagcaa
attaattctttgtggttgttttggcttctagttggtgggggacttgagct
aacaatggcataatgttcaagaatattcacttttggaaagtgtatgaaaa
aaagagttttgacacttaaagttgaaagaaaatggtagtattatgggtca
tgtttagttgtattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28526702_28527886
seq2: B6Ng01-152B17.b_46_1226

seq1  GAATTCTTTTTCATCTTCACCCCCTACTTTAAAGTTTTCATCTTAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCATCTTCACCCCCTACTTTAAAGTTTTCATCTTAGCCAG  50

seq1  TGTAACCTTCAAATCTTGTGTCTTAGCAAAAGCTTACATATAAACAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTTCAAATCTTGTGTCTTAGCAAAAGCTTACATATAAACAGCAC  100

seq1  CTACTTTCTTGTTCTCTCAAATGACTCCACTGTCTCAAATATCCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTTGTTCTCTCAAATGACTCCACTGTCTCAAATATCCCCTTCT  150

seq1  TCATATCAAGCTTTGCCCCATAATCTGGGGATTCTGTCATTTTGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCAAGCTTTGCCCCATAATCTGGGGATTCTGTCATTTTGAGGCCA  200

seq1  CACAACTTCTCCATGTCTATGTTGTCTTGGTAATATATTTTGAATTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTCTCCATGTCTATGTTGTCTTGGTAATATATTTTGAATTTCTA  250

seq1  TTTCCACCACCTCCTCTCTGTCCTCTGGGAAGAACTTTCCTTACCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCACCTCCTCTCTGTCCTCTGGGAAGAACTTTCCTTACCATCTT  300

seq1  TTCTACCGCCTTTTTAGATATATTTTCTAATGTAAACATTAGGACTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCGCCTTTTTAGATATATTTTCTAATGTAAACATTAGGACTTCAG  350

seq1  TGGGTTAAACGATGGTTGTGCAAATAGTTTTGCAAGTGTTAACCCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAAACGATGGTTGTGCAAATAGTTTTGCAAGTGTTAACCCTGAGG  400

seq1  TCTGTTTTCCAGTTCATTGATGGTCATTTATACACAATATTATTGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCAGTTCATTGATGGTCATTTATACACAATATTATTGGGACT  450

seq1  TTGCTCCAGAGATACACAAGCTTGATAACATTATTTCCTCTTCAAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAGAGATACACAAGCTTGATAACATTATTTCCTCTTCAAATGCA  500

seq1  TTTCTTCTGAATTCTTATTTCTCTTATGGAGCAGGCTTTTATTTCTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGAATTCTTATTTCTCTTATGGAGCAGGCTTTTATTTCTTTAG  550

seq1  TTCTTAAGGAAGGCCCTGTTGCTTCTAATATTCACTCACTTCTATTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGGAAGGCCCTGTTGCTTCTAATATTCACTCACTTCTATTGATG  600

seq1  AACTTCTACAATGGCTTTGAAGAGAGTCTTCCTATGTTTATTCCTACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACAATGGCTTTGAAGAGAGTCTTCCTATGTTTATTCCTACTGC  650

seq1  TACTGCCTTGGTTCGTGTATCTCTTGCAGAGAGCTTAGTATTCAATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTTGGTTCGTGTATCTCTTGCAGAGAGCTTAGTATTCAATAGCT  700

seq1  GCTTATCATGTCTCTTTCTTTCATCACCTCCAAACTTCAATATCACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCATGTCTCTTTCTTTCATCACCTCCAAACTTCAATATCACACAG  750

seq1  ACTGCCTGAGTCCCCCTGAAGCAAAACCCTGCTGGTGCTATAATTTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGAGTCCCCCTGAAGCAAAACCCTGCTGGTGCTATAATTTGGTG  800

seq1  TTAAAAATCATCCAAGTTTCATCAAAGTGCTAGACTCTAGCAGATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCATCCAAGTTTCATCAAAGTGCTAGACTCTAGCAGATTTTCT  850

seq1  GAGGAAATATCAGCAAAAGTTCCACGACTGAAATCCCCCATCCAGAAGAT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGGAAATATCAGCAAAAG-TCCACGACTGAAATCCCCCATCCAGAAGAT  899

seq1  TTTTGATGTGGAAAGGTGAAGCCAGGAGATGATAGTGAAGGTGGTTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGTGGAAAGGTGAAGCCAGGAGATGATAGTGAAGGTGGTTATAT  949

seq1  TGAATTCACTCCTGCCTTCATGAGATGGTTGGGAATGGGAGACCTTCAGT  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAATTCACTCCTGCCTTCATGAGATGGGTGGGAATGGGAGACCTTCAGT  999

seq1  TAGTACTCCTGTGAGTTCACTCTATACCCTCATTGTTTGCCCTTCATATC  1050
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TAGTACTCCTGTGAG-TCACTCTATAACCTCATTGTTTGCCCTTCATATC  1048

seq1  T-GGAAGACAC-TGCAGGATGGTGCCTGATTCCT-ATGAAAGGAAGCCAC  1097
      | ||||||||| |||| ||||||| |||||| ||  ||||||| ||||||
seq2  TGGGAAGACACTTGCA-GATGGTGGCTGATTTCTCTTGAAAGG-AGCCAC  1096

seq1  AGCAACTTACAATGGAAGACAGAAGGGTTGTACCCAGGAAACCAATGCA-  1146
      |||||||| | |||||  ||||||||| |||   ||||  ||||||||| 
seq2  AGCAACTT-CCATGGAGAACAGAAGGG-TGTTATCAGG--ACCAATGCAG  1142

seq1  TG-CTCCTCTGGGCAGAAACATCAGTCTGTTCAGGCTTGA  1185
      || ||||||||||| |||||||||     |||||||||||
seq2  TGTCTCCTCTGGGC-GAAACATCACATGTTTCAGGCTTGA  1181

seq1: chr15_28638722_28639840
seq2: B6Ng01-152B17.g_68_1182 (reverse)

seq1  CAAT-CAACTATACAATGACCCATAATACTAACACTTTTCTATCCACCTT  49
      |||| |||||| || |||||||||||||||| || |||||| || || ||
seq2  CAATACAACTAAAC-ATGACCCATAATACTACCA-TTTTCTTTCAACTTT  48

seq1  AAATGTCAATAACTC-TTTTTTCATACACTTTCCAAACAGTGAACATTTC  98
      || |||||| ||||| ||||||||||||||||||||| |||||| |||  
seq2  AAGTGTCAA-AACTCTTTTTTTCATACACTTTCCAAA-AGTGAATATT--  94

seq1  TTTGAACATTATGGCCATTGTTAGCTCAAGT-CCCCACCAACTATGAGCC  147
       ||||||||||| |||||||||||||||||| ||||||||||||  ||||
seq2  CTTGAACATTAT-GCCATTGTTAGCTCAAGTCCCCCACCAACTAGAAGCC  143

seq1  AAAACAACCACAAAGAATTAATTTTGCT-CAAGGATGACTTTTAATAGTC  196
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  AAAACAACCACAAAGAATTAA-TTTGCTCCAAGGATGACTTTTAATAGTC  192

seq1  AGGTGGAATCAATATGAGGTTGTCAAATTATTCATGAGTTTACAAATTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAATCAATATGAGGTTGTCAAATTATTCATGAGTTTACAAATTCT  242

seq1  GTGAATATTTCAGGGAGAAATGAATAGATATTAGCTCACATCAAATAGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTTCAGGGAGAAATGAATAGATATTAGCTCACATCAAATAGGG  292

seq1  TATCAATGATAGAACAAATAAAAGACTACTAAAGTTGATCTTGCTGAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGATAGAACAAATAAAAGACTACTAAAGTTGATCTTGCTGAACC  342

seq1  ACTTAGTCAGGTTACTTAAAAGCACAAGGGTAAGGGGCTATTTACAGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCAGGTTACTTAAAAGCACAAGGGTAAGGGGCTATTTACAGGAG  392

seq1  TATGGTTGACAACTCATGAAGTTCCACCAGAGTCCCTTCAAGTGTTTACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGACAACTCATGAAGTTCCACCAGAGTCCCTTCAAGTGTTTACT  442

seq1  ATTTAATGACTTCAAGGAGCAGCCTTTTTAGTTTTGTAACTTTTTTTTAA  496
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTAATGACTTCAAGGAGCAGCCTTTTTAGTTTTGTAACTTTTTTATAA  492

seq1  CTTCTTGGCTCTTTACTAATTTTTATTTATTTCTCAATTCCTTAGACCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGCTCTTTACTAATTTTTATTTATTTCTCAATTCCTTAGACCTT  542

seq1  CTCACTACCATCACGAGAGAATGTTTCAAGTCAAAGTATTTGGCTACATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTACCATCACGAGAGAATGTTTCAAGTCAAAGTATTTGGCTACATA  592

seq1  GCATTAATGATCCTTTGAAAAGTTAGTTTTCATTGTTGATTAGGTAGTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATGATCCTTTGAAAAGTTAGTTTTCATTGTTGATTAGGTAGTAA  642

seq1  TCTTCTAGCTTCTAATTCAAAGGATGAGGAAGCAGTTGTAATGTGAAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGCTTCTAATTCAAAGGATGAGGAAGCAGTTGTAATGTGAAAGA  692

seq1  GCTTTAACCAGGACACACATAGCCTAGGACATTAGGCTTCAGTGCTTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACCAGGACACACATAGCCTAGGACATTAGGCTTCAGTGCTTTGT  742

seq1  TTTAATTGCTTTCTAATTTATGCATTTTCAGATCAATCTTTAAGAAAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCTTTCTAATTTATGCATTTTCAGATCAATCTTTAAGAAAGAA  792

seq1  AAGGGTACATCTGGAACATAAGTTATGAAGTCTTAACATAAAATATTTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTACATCTGGAACATAAGTTATGAAGTCTTAACATAAAATATTTTG  842

seq1  CTTCATTAAATTTATTTTTCATGTGGACTATTATCTTTACAGATTCATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAAATTTATTTTTCATGTGGACTATTATCTTTACAGATTCATGA  892

seq1  GATGATTTGGTGGAAATTTGCAAAATAAAAAAAAACAGTAGAAATTAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTGGTGGAAATTTGCAAAATAAAAAAAAACAGTAGAAATTAAGA  942

seq1  AACAAAAATCAAGGTCTGAGGGGAAGTAAGAAGATTGGAATGGACTAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATCAAGGTCTGAGGGGAAGTAAGAAGATTGGAATGGACTAAAT  992

seq1  ATCATTCTTGTGATCTATCTGGAAGAAGGAGTATGTGGAATTGTTTCTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTGTGATCTATCTGGAAGAAGGAGTATGTGGAATTGTTTCTAG  1042

seq1  TTGATTATGGCATGATATGTAAATCCACCAAACTCAACCAAACCCAATGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATGGCATGATATGTAAATCCACCAAACTCAACCAAACCCAATGG  1092

seq1  TTTGAGAACTAATGAATGAATTC  1119
      |||||||||||||||||||||||
seq2  TTTGAGAACTAATGAATGAATTC  1115