BAC Information

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BAC

Clone NameB6Ng01-152E18
Chromosome15 (Build37)
Map Location 79,200,742 - 79,369,981
singlet/doubletdoublet
Overlap gene4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17
Upstream gene1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff
Downstream geneDmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E18.bB6Ng01-152E18.g
ACCDH947905DH947906
length7221,047
definitionDH947905|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E18, 5' end.DH947906|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,369,271 - 79,369,981)(79,200,742 - 79,201,781)
sequence
gaattcttagggtggttgggattttggggttttgggtgaagttggggtgg
ctgtctcagggttatttgtgtccccccccccccttgtttcagtgtctagt
gctggctcctaccagagagcttgcgcagcaggtgcagcaggtggctgacg
attatggaaaatgctccaggttgaagagtacgtgcatttacggaggtgct
cctaaaggtccccaaattcgagacttggaaagaggtaaaaagaattttca
tgcttgccaatttctataaatgaaaatgaacattgggttcttctaagaaa
atttcagtattttcaatagtgtagaaattcttgggattgtgggtctatta
gatattttgttggaggaaatttgtaactagagacttaatctactgtttgt
gacccctcttccatcatgctcattggatacttagtgtaagtttagcaatt
gctataacattgaatgcagccactagggctggggctttctagttactgtg
tgctgaggtttggatattgtataagaaagggttcttcatggactagagtt
tttgttgttattgttgcttttataggtgtttgagattttgcatagccact
cctgggcgcctaatagatttcctgggagtcaggaaagacaaacctttcgc
cgatgtactttacctttgtgttggatgaggctgaccggatgcttgatatg
gggctttgagcccccagatccc
gaattccctggacatgctcccgtgcgctcagtgagtggtgtgacgctcac
tccagagcaccctgcagggagttgctgagtcctaccccagtacaagctga
aggcctgggacctgcagccagcactgcagggatgaaggtcaggggctgga
tgtggcctctggctctccagcattatcacctatggcaaaggccagggcag
gccacaggcctacgctcacactggctctcacaggacctccccctggcagg
acagaaaaggaacctttcttgaaatggattctcccagagaagccacagga
cccaacaccacttccccttgggaggacatgtcgcccaccagagcttacac
ccttccctttctgtgcagtgtgagcctgggctgctggtccaccacagcca
tacccagctctgactgaaaggctcactcccgctgcgctccactctcagct
caagactgtcaccttagcaagtacacagaacaaccagtgctgtttcactg
ccaacaatcactagtgtgtcactaataaattcatcaattctcagagaaag
gagacgagaacaacctcctcagacatgactgattgatcaaatcaggtccc
ctgactacctgttaaaatccactccctttggtagtaaatatttaaactcc
tcctgaggtttctacccatccctctcggatggacgaaagacacacacagc
ctttatacttacaatacacgttaatcagtacaatagctgggcagaagaga
cataggtggggtttaggctttgcgggtttggggtcagaggaggaacgtga
agggggagaagaggagggcatgaggagagtggccatgggttagatgagcc
agaagaacattggtctgagggttggctgattgaagttatttagcagcccg
gcgaaacacaagtaagtaatctcggatagcagataacgaagtggatttca
aacatcctagggagggaaggcgctggcccagctcttgtggctgttcaaag
tctaattaaatcataaaaggactgggtggggttttttttatcgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79369271_79369981
seq2: B6Ng01-152E18.b_47_767 (reverse)

seq1  GGATCT-GGGGCTCAAAG-CCCATATCAAGCATCCGGTCAGCCTCATCCA  48
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  GGATCTGGGGGCTCAAAGCCCCATATCAAGCATCCGGTCAGCCTCATCCA  50

seq1  ACAC-AAGGT-AAGTACATCGGCG-AAGGTTTGTCTTTCCTGACT-CCAG  94
      |||| ||||| ||||||||||||| |||||||||||||||||||| ||||
seq2  ACACAAAGGTAAAGTACATCGGCGAAAGGTTTGTCTTTCCTGACTCCCAG  100

seq1  GAAATCTATTAGGCGCCCAGGAGTGGCTATGC-AAATCTC-AACACCTAT  142
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  GAAATCTATTAGGCGCCCAGGAGTGGCTATGCAAAATCTCAAACACCTAT  150

seq1  -AAAGCAACAATAACAACAAAAACTCTAGTCCATGAAGAACCCTTTCTTA  191
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACAATAACAACAAAAACTCTAGTCCATGAAGAACCCTTTCTTA  200

seq1  TACAATATCCAAACCTCAGCACACAGTAACTAGAAAGCCCCAGCCCTAGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATCCAAACCTCAGCACACAGTAACTAGAAAGCCCCAGCCCTAGT  250

seq1  GGCTGCATTCAATGTTATAGCAATTGCTAAACTTACACTAAGTATCCAAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATTCAATGTTATAGCAATTGCTAAACTTACACTAAGTATCCAAT  300

seq1  GAGCATGATGGAAGAGGGGTCACAAACAGTAGATTAAGTCTCTAGTTACA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGATGGAAGAGGGGTCACAAACAGTAGATTAAGTCTCTAGTTACA  350

seq1  AATTTCCTCCAACAAAATATCTAATAGACCCACAATCCCAAGAATTTCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTCCAACAAAATATCTAATAGACCCACAATCCCAAGAATTTCTA  400

seq1  CACTATTGAAAATACTGAAATTTTCTTAGAAGAACCCAATGTTCATTTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGAAAATACTGAAATTTTCTTAGAAGAACCCAATGTTCATTTTC  450

seq1  ATTTATAGAAATTGGCAAGCATGAAAATTCTTTTTACCTCTTTCCAAGTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGAAATTGGCAAGCATGAAAATTCTTTTTACCTCTTTCCAAGTC  500

seq1  TCGAATTTGGGGACCTTTAGGAGCACCTCCGTAAATGCACGTACTCTTCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATTTGGGGACCTTTAGGAGCACCTCCGTAAATGCACGTACTCTTCA  550

seq1  ACCTGGAGCATTTTCCATAATCGTCAGCCACCTGCTGCACCTGCTGCGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGCATTTTCCATAATCGTCAGCCACCTGCTGCACCTGCTGCGCA  600

seq1  AGCTCTCTGGTAGGAGCCAGCACTAGACACTGAAACAAGGGGGGGGGGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTGGTAGGAGCCAGCACTAGACACTGAAACAAGGGGGGGGGGGG  650

seq1  ACACAAATAACCCTGAGACAGCCACCCCAACTT-AAATAAAACCCCAAAA  690
      ||||||||||||||||||||||||||||||||| |   ||||||||||||
seq2  ACACAAATAACCCTGAGACAGCCACCCCAACTTCACCCAAAACCCCAAAA  700

seq1  TCCCAACCACCCTAAGAATTC  711
      |||||||||||||||||||||
seq2  TCCCAACCACCCTAAGAATTC  721

seq1: chr15_79200742_79201781
seq2: B6Ng01-152E18.g_68_1114

seq1  GAATTCCCTGGACATGCTCCCGTGCGCTCAGTGAGTGGTGTGACGCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGACATGCTCCCGTGCGCTCAGTGAGTGGTGTGACGCTCAC  50

seq1  TCCAGAGCACCCTGCAGGGAGTTGCTGAGTCCTACCCCAGTACAAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCACCCTGCAGGGAGTTGCTGAGTCCTACCCCAGTACAAGCTGA  100

seq1  AGGCCTGGGACCTGCAGCCAGCACTGCAGGGATGAAGGTCAGGGGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGGACCTGCAGCCAGCACTGCAGGGATGAAGGTCAGGGGCTGGA  150

seq1  TGTGGCCTCTGGCTCTCCAGCATTATCACCTATGGCAAAGGCCAGGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCTGGCTCTCCAGCATTATCACCTATGGCAAAGGCCAGGGCAG  200

seq1  GCCACAGGCCTACGCTCACACTGGCTCTCACAGGACCTCCCCCTGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGCCTACGCTCACACTGGCTCTCACAGGACCTCCCCCTGGCAGG  250

seq1  ACAGAAAAGGAACCTTTCTTGAAATGGATTCTCCCAGAGAAGCCACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGGAACCTTTCTTGAAATGGATTCTCCCAGAGAAGCCACAGGA  300

seq1  CCCAACACCACTTCCCCTTGGGAGGACATGTCGCCCACCAGAGCTTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACCACTTCCCCTTGGGAGGACATGTCGCCCACCAGAGCTTACAC  350

seq1  CCTTCCCTTTCTGTGCAGTGTGAGCCTGGGCTGCTGGTCCACCACAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTTTCTGTGCAGTGTGAGCCTGGGCTGCTGGTCCACCACAGCCA  400

seq1  TACCCAGCTCTGACTGAAAGGCTCACTCCCGCTGCGCTCCACTCTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCTCTGACTGAAAGGCTCACTCCCGCTGCGCTCCACTCTCAGCT  450

seq1  CAAGACTGTCACCTTAGCAAGTACACAGAACAACCAGTGCTGTTTCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGTCACCTTAGCAAGTACACAGAACAACCAGTGCTGTTTCACTG  500

seq1  CCAACAATCACTAGTGTGTCACTAATAAATTCATCAATTCTCAGAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATCACTAGTGTGTCACTAATAAATTCATCAATTCTCAGAGAAAG  550

seq1  GAGACGAGAACAACCTCCTCAGACATGACTGATTGATCAAATCAGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGAGAACAACCTCCTCAGACATGACTGATTGATCAAATCAGGTCCC  600

seq1  CTGACTACCTGTTAAAATCCACTCCCTTTGGTAGTAAATATTTAAACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTACCTGTTAAAATCCACTCCCTTTGGTAGTAAATATTTAAACTCC  650

seq1  TCCTGAGGTTTCTACCCATCCCTCTCGGATGGACGAAAGACACACACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTTTCTACCCATCCCTCTCGGATGGACGAAAGACACACACAGC  700

seq1  CTTTATACTTACAATACACGTTAATCAGTACAATAGCTGGGCAGAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACTTACAATACACGTTAATCAGTACAATAGCTGGGCAGAAGAGA  750

seq1  CATAGGTGGGGTTTAGGCTTTGCGGGTTTGGGGTCAGAGGAGGAACGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGGGGTTTAGGCTTTGCGGGTTTGGGGTCAGAGGAGGAACGTGA  800

seq1  AGGGGGAGAAGAGGAGGGCATGAGGAAGAAGTGGCCATGGGTTAGATGAG  850
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  AGGGGGAGAAGAGGAGGGCATGAGGA--GAGTGGCCATGGGTTAGATGAG  848

seq1  CCAGAAGAACATGGTTCTGAGGGCTGGCTGATTGAAGTTA-TGAGCAGCC  899
      |||||||||||| | |||||||| |||||||||||||||| | |||||||
seq2  CCAGAAGAACATTGGTCTGAGGGTTGGCTGATTGAAGTTATTTAGCAGCC  898

seq1  CAGACGAAACAC-AGTAAGTAA-CTCGGATTATCGATAGCAAAGTAGA-T  946
      | | |||||||| ||||||||| |||||||    |||| | |||| || |
seq2  C-GGCGAAACACAAGTAAGTAATCTCGGATAGCAGATAACGAAGTGGATT  947

seq1  TCTAACAT-CGAGGAGGGTAAGCAGCT-GCCCAGCTCTTGT-GCTGCT-T  992
      || ||||| | |||  || |||  ||| ||||||||||||| |||| |  
seq2  TCAAACATCCTAGGGAGGGAAGGCGCTGGCCCAGCTCTTGTGGCTGTTCA  997

seq1  AAGGCTTATTAAAAC-TATAAAGGCTGTGTGTG--TTTTTTTATCTGGGA  1039
      ||| || |||||| | || || | ||| ||| |  |||||||||| ||||
seq2  AAGTCTAATTAAATCATAAAAGGACTGGGTGGGGTTTTTTTTATC-GGGA  1046

seq1  A  1040
      |
seq2  A  1047