BAC Information

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BAC

Clone NameB6Ng01-152K04
Chromosome15 (Build37)
Map Location 49,519,170 - 49,649,138
singlet/doubletdoublet
Overlap geneLOC665160
Upstream geneEG665146, LOC100039600, LOC100039539
Downstream geneTrps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K04.bB6Ng01-152K04.g
ACCDH948162DH948163
length1,1241,084
definitionDH948162|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K04, 5' end.DH948163|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,648,009 - 49,649,138)(49,519,170 - 49,520,250)
sequence
gaattcttggtagtgttgactcagtccacattttaccctgcctttctgat
ggtgagaaaggcttttctcagtcactctatgctgttggatgtttatgagc
ttgtatttaggatctagcatcactttcctggtcaaactcttaaagtaagg
tgggatcctaaaatgcaacctgaggagtagattagagtggtcttgggtaa
tatattaatagctagtgaagatgagtttgtgtggaatctcagaagtttgg
tgtaacaaacagaaagtagttagactgacatgagatacagggtcctaaga
caaaaggtgcattgggatagttcagtttataaccccacagtggcaagtta
gtgatcattaagaaagtccaaaaggaaacaaatataattatgataacagg
gcatagaaatggtctgtgagctaggataccatggaaaggaagaagtctaa
taagatggggaacagtttcaaaaaaaaaatgagaaccacatacagtgatc
atttttcatatctagaaaagaaaacaaacctaacaatttaactcattttc
atgtcctaatttttaaaattgaaataaaaaataaccttctaaaaattatt
caagttttgtagctcttaagcagtaaatggcaaacattaatttctaatat
ttatatatccttgataacatacactgataaaatgcatatatatatatatt
cacttctaactcttctctaacacactttgccccacaaacacatctatttc
gcaacttcatgttatctttttattatcatatttatttattataactaccc
aattccaattagtactgctgatatgcacatgattgtacaaccatcccttt
gaaccaagttaaactggcaacccacttataaaaagaactgcttttctttc
ataaaaactctcacatgagcatcagtaggtttttaagattagaactgggg
ttgatctttgaagcttagtaggatcagacctgattagtattggatggagt
cattttttctgcagaagataactgtgataagtcaaatatttagcatttat
tagatatttaatacatctcctgtaaaaactactggtggttcaagtgcaat
aggatgttttaacattcatgccac
gaattcatagccccactttggttcttataatctttccatcataaatcctt
gatgattggggataagtgtttgccaaatacactcaattggggctgagtaa
tttaaaatgtatcactctgtgcacattttattgtgttcctttaattttca
ttggtaacttgttttggttttttgtttgtttgtttgtatttttgcaaatt
tgtatttttcatttttttattttggtttattttttaatgagaggaaagaa
catgaaagtctgtgagggaaataatatgaagaatgtttggaaggagttct
gggtgtagaggaatttgataaaaatatattgtttaactacttaggctcct
aagcacaaaaatatgtaaagtataaataatataatgattgataaataaat
ttaaaatcattttacaaaacttcatataaaagtcaacatttttacctttt
ttaaagtaaaaatgtaagagccaaaacaaaaacaaaaaaaaaaccttcat
tttgaaaacagaacaggaatgcacagagttgacacacagtaaatagcata
aattatttgtaagagatgcttcatggcatactgagaaaaaaaattatttg
cctatagcatgcatgcatagttatttactaagttcttagaaaatgcaact
caatgacactatcttcttccttataaaatcagtctgtaacagtatctatc
tttttataaagtgactcaatctgcatttttccactgggcattactcacac
tctacatgtgagaaggtccagtactgtcctccattacagtagaactcagt
catataattatggcatatttatgagtaaaatgtttacaaatattttgtta
tatttgacttttatgaaagttttttgttcagaaaacagaaataaaatccc
tgagagtcctagaattctgtgaggatattaaatagaatgatatagtcata
gaatagtaatgtcattgtgcagcagaagatatgaaagcatctcaaccaga
agagtttctatgaaagtatgaaagtatttgaatattcatttacttacatg
gtgtaatcagtaatcatcagaagccatcattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49648009_49649138
seq2: B6Ng01-152K04.b_45_1168 (reverse)

seq1  GTGGCATGAATGTTAAAACATTCTATTTGCCACTTGAACCA-CAGTAGAT  49
      ||||||||||||||||||||| |||||   ||||||||||| |||||| |
seq2  GTGGCATGAATGTTAAAACATCCTATT--GCACTTGAACCACCAGTAG-T  47

seq1  TTTTACA-GAGATGTATTTAAATATCTAATATATGCTAAATATTTTGACT  98
      ||||||| |||||||| |||||||||||||| |||||||||| |||||||
seq2  TTTTACAGGAGATGTA-TTAAATATCTAATAAATGCTAAATA-TTTGACT  95

seq1  TATCACAGTTATCTTCTGCAGGAAAAAAATGACTCCCATTCAAATACTAA  148
      |||||||||||||||||||||  |||||||||||||   || ||||||||
seq2  TATCACAGTTATCTTCTGCAG--AAAAAATGACTCC--ATCCAATACTAA  141

seq1  TCAGGTCTGATCCTACTAAGCTTCAAAGATCAACCCCAGTTCTAATCTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTGATCCTACTAAGCTTCAAAGATCAACCCCAGTTCTAATCTTA  191

seq1  AAAACCTACTGATGCTCATGTGAGAGTTTTTATGAAAG-AAAGCAGTTCT  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAACCTACTGATGCTCATGTGAGAGTTTTTATGAAAGAAAAGCAGTTCT  241

seq1  TTTTATAAGTGGGTTGCCAGTTTAACTTTGGTTC-AAGGGATGGTTGTAC  296
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTTTATAAGTGGGTTGCCAGTTTAAC-TTGGTTCAAAGGGATGGTTGTAC  290

seq1  AATCATGTGCATATCAGCAGTACTAATTGGAATTGGGTAGTTATAATAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTGCATATCAGCAGTACTAATTGGAATTGGGTAGTTATAATAAA  340

seq1  TAAATATGATAATAAAAAGATAACATGAAGTTGCGAAATAGATGTGTTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGATAATAAAAAGATAACATGAAGTTGCGAAATAGATGTGTTTG  390

seq1  TGGGGCAAAGTGTGTTAGAGAAGAGTTAGAAGTGAATATATATATATATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAAGTGTGTTAGAGAAGAGTTAGAAGTGAATATATATATATATG  440

seq1  CATTTTATCAGTGTATGTTATCAAGGATATATAAATATTAGAAATTAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATCAGTGTATGTTATCAAGGATATATAAATATTAGAAATTAATG  490

seq1  TTTGCCATTTACTGCTTAAGAGCTACAAAACTTGAATAATTTTTAGAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTTACTGCTTAAGAGCTACAAAACTTGAATAATTTTTAGAAGG  540

seq1  TTATTTTTTATTTCAATTTTAAAAATTAGGACATGAAAATGAGTTAAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATTTCAATTTTAAAAATTAGGACATGAAAATGAGTTAAATT  590

seq1  GTTAGGTTTGTTTTCTTTTCTAGATATGAAAAATGATCACTGTATGTGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTTGTTTTCTTTTCTAGATATGAAAAATGATCACTGTATGTGGT  640

seq1  TCTCATTTTTTTTTTGAAACTGTTCCCCATCTTATTAGACTTCTTCCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTTTTTTTGAAACTGTTCCCCATCTTATTAGACTTCTTCCTTT  690

seq1  CCATGGTATCCTAGCTCACAGACCATTTCTATGCCCTGTTATCATAATTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTATCCTAGCTCACAGACCATTTCTATGCCCTGTTATCATAATTA  740

seq1  TATTTGTTTCCTTTTGGACTTTCTTAATGATCACTAACTTGCCACTGTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTCCTTTTGGACTTTCTTAATGATCACTAACTTGCCACTGTGG  790

seq1  GGTTATAAACTGAACTATCCCAATGCACCTTTTGTCTTAGGACCCTGTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAAACTGAACTATCCCAATGCACCTTTTGTCTTAGGACCCTGTAT  840

seq1  CTCATGTCAGTCTAACTACTTTCTGTTTGTTACACCAAACTTCTGAGATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCAGTCTAACTACTTTCTGTTTGTTACACCAAACTTCTGAGATT  890

seq1  CCACACAAACTCATCTTCACTAGCTATTAATATATTACCCAAGACCACTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAACTCATCTTCACTAGCTATTAATATATTACCCAAGACCACTC  940

seq1  TAATCTACTCCTCAGGTTGCATTTTAGGATCCCACCTTACTTTAAGAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACTCCTCAGGTTGCATTTTAGGATCCCACCTTACTTTAAGAGTT  990

seq1  TGACCAGGAAAGTGATGCTAGATCCTAAATACAAGCTCATAAACATCCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGAAAGTGATGCTAGATCCTAAATACAAGCTCATAAACATCCAA  1040

seq1  CAGCATAGAGTGACTGAGAAAAGCCTTTCTCACCATCAGAAAGGCAGGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGAGTGACTGAGAAAAGCCTTTCTCACCATCAGAAAGGCAGGGT  1090

seq1  AAAATGTGGACTGAGTCAACACTACCAAGAATTC  1130
      ||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGACTGAGTCAACACTACCAAGAATTC  1124

seq1: chr15_49519170_49520250
seq2: B6Ng01-152K04.g_67_1150

seq1  GAATTCATAGCCCCACTTTGGTTCTTATAATCTTTCCATCATAAATCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCCCCACTTTGGTTCTTATAATCTTTCCATCATAAATCCTT  50

seq1  GATGATTGGGGATAAGTGTTTGCCAAATACACTCAATTGGGGCTGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTGGGGATAAGTGTTTGCCAAATACACTCAATTGGGGCTGAGTAA  100

seq1  TTTAAAATGTATCACTCTGTGCACATTTTATTGTGTTCCTTTAATTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTATCACTCTGTGCACATTTTATTGTGTTCCTTTAATTTTCA  150

seq1  TTGGTAACTTGTTTTGGTTTTTTGTTTGTTTGTTTGTATTTTTGCAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACTTGTTTTGGTTTTTTGTTTGTTTGTTTGTATTTTTGCAAATT  200

seq1  TGTATTTTTCATTTTTTTATTTTGGTTTATTTTTTAATGAGAGGAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTCATTTTTTTATTTTGGTTTATTTTTTAATGAGAGGAAAGAA  250

seq1  CATGAAAGTCTGTGAGGGAAATAATATGAAGAATGTTTGGAAGGAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTCTGTGAGGGAAATAATATGAAGAATGTTTGGAAGGAGTTCT  300

seq1  GGGTGTAGAGGAATTTGATAAAAATATATTGTTTAACTACTTAGGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGAGGAATTTGATAAAAATATATTGTTTAACTACTTAGGCTCCT  350

seq1  AAGCACAAAAATATGTAAAGTATAAATAATATAATGATTGATAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAAATATGTAAAGTATAAATAATATAATGATTGATAAATAAAT  400

seq1  TTAAAATCATTTTACAAAACTTCATATAAAAGTCAACATTTTTACCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCATTTTACAAAACTTCATATAAAAGTCAACATTTTTACCTTTT  450

seq1  TTAAAGTAAAAATGTAAGAGCCAAAACAAAAACAAAAAAAAAACCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAAAAATGTAAGAGCCAAAACAAAAACAAAAAAAAAACCTTCAT  500

seq1  TTTGAAAACAGAACAGGAATGCACAGAGTTGACACACAGTAAATAGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACAGAACAGGAATGCACAGAGTTGACACACAGTAAATAGCATA  550

seq1  AATTATTTGTAAGAGATGCTTCATGGCATACTGAGAAAAAAAATTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGTAAGAGATGCTTCATGGCATACTGAGAAAAAAAATTATTTG  600

seq1  CCTATAGCATGCATGCATAGTTATTTACTAAGTTCTTAGAAAATGCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCATGCATGCATAGTTATTTACTAAGTTCTTAGAAAATGCAACT  650

seq1  CAATGACACTATCTTCTTCCTTATAAAATCAGTCTGTAACAGTATCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACACTATCTTCTTCCTTATAAAATCAGTCTGTAACAGTATCTATC  700

seq1  TTTTTATAAAGTGACTCAATCTGCA-TTTTCCACTGGGCATTACTCACAC  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTATAAAGTGACTCAATCTGCATTTTTCCACTGGGCATTACTCACAC  750

seq1  TCTACATGTGAGAAGGTCCAGTACTGTCCTCCATTACAGTAGAACTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGTGAGAAGGTCCAGTACTGTCCTCCATTACAGTAGAACTCAGT  800

seq1  CATATAATTATGGCATATTTATGAGTAAAATGTTTACAAATA-TTTGTTA  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATATAATTATGGCATATTTATGAGTAAAATGTTTACAAATATTTTGTTA  850

seq1  TA-TTGACTCTTATGAAAGTGTTTTGTTCAGAAAACAGAAATAAAATCCC  897
      || |||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TATTTGACTTTTATGAAAGTTTTTTGTTCAGAAAACAGAAATAAAATCCC  900

seq1  TGAGAGTCCTAGAATTCTGTGAGGATATTAAATAGAATGATATAGTCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGAGTCCTAGAATTCTGTGAGGATATTAAATAGAATGATATAGTCAT-  949

seq1  AGAATAGTAATGTCA-TGTGCAAGCAG-AGATATGAAAGCATCTCAACCA  995
      ||||||||||||||| ||||| ||||| ||||||||||||||||||||||
seq2  AGAATAGTAATGTCATTGTGC-AGCAGAAGATATGAAAGCATCTCAACCA  998

seq1  GAAGAG-TTCTATGAAAGTATGAAAGTATTTGAATATTCATTTAC-TACA  1043
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGAGTTTCTATGAAAGTATGAAAGTATTTGAATATTCATTTACTTACA  1048

seq1  TGTGTTAATCAGTAAATCATCCAGAACCCATCATTTTT  1081
      ||   |||||||| |||||| ||||| |||||||||||
seq2  TGGTGTAATCAGT-AATCAT-CAGAAGCCATCATTTTT  1084