BAC Information

Click to search

BAC

Clone NameB6Ng01-153A07
Chromosome15 (Build37)
Map Location 15,101,963 - 15,102,995
singlet/doubletsinglet
Overlap geneLOC100040033
Upstream geneLOC674819, LOC100040024
Downstream geneLOC100040046, EG239341, LOC100040087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153A07.bB6Ng01-153A07.g
ACCDH948447DH948448
length6511,027
definitionDH948447|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A07, 5' end.DH948448|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtcctacatttaatagatagggaaagaaaggttagctttgtg
tagtccttgattttagtgggattgattcaagtttctctccatttagtttg
atgttggctactaatttgctgtatattgtttttactatgtttaggtatgg
gccttgaattcctgatcttaccaagacttagtatgttgaattttgtcaat
gctttttcagcatctaatgaaatgatcatgttttttttttctttcagttt
gtttatgtagtggtttacattaatggattttcgtatattgaataatccct
ttatccctggaatgaagcctccttgatcttggtgaatgatcattttgatg
tgttctcggatttgattgacaagaattatattaattatttttgcatcaat
attcataaggaaattggtctgaagttctctttctttggtctttgtgtgct
tttggtgtcaatgtaattgtggcttcatagaacgaattggattgtgttcc
ttttgtttctattttatggaatagtttaaaatgtattggtattaggcctt
ctttgaaggtctgatagaattctgcattaactttatatgccccagtacag
gggaacaccagggccaaaaagggggagtgggtgggcaggggagtgggggt
g

gaattcctttcggagtccatgagaataggggtatgttcctgaagtttgtc
cattagagccacgggacagcagagtaagaaagtttggattttccacacat
ggctcagaataggaccatagggaagagttaaaatattaataatcagacat
caaaaatgctctcttgctatttatgaagaacacttgtaaaacagacatca
ctgaaagtctatgaaatgtccagttagtattgattttgtgtttactggat
ttcaaaggaagtacgttcattaatacagtccaacagtacactcaaacatt
acataatataaggatcataataaaatcactccttcacattctttagggtt
ttcccataccccatgttttttgacattttggttgtgagcctagcctttaa
tggctgaataatctctgtagccaaaaacagcccatgtttttacttattgt
ctctaccataataagtaaaaactgtacaaaataatacatagggatattag
tgctgataatacaatcataactttcatatatttcaagaaatttagttttc
tctatgtttgtaaattttgtatcatttttatttacagattgtgaaacagt
agaaattgagtaataaaattcaagtatattatttttcaaattatatgctt
tagaaaattactgttaaaaacaacgaattcatgaaattcttagtcaaata
ggtataagtagaaaatatcatcctaagtgatatagctcaatcacaaaaga
acacagatggtacactcacactgataagtggatattagcccagaaactca
gaatacccaaagtacaattcacagaccaaatgaagctcaaaaagaaggaa
gaacaaagtatggatacttcggtccttcttagatagggaacaaaataacg
agagacaaagtgtggaggagtacactgatagataggcaaaacacaccact
caatttatagatatggagttgcccatgggaggaatacagatacaagtgta
agcagaaactgaggaatagaccatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_15101963_15102995
seq2: B6Ng01-153A07.g_68_1094

seq1  GAATTCCTTTCGGAGTCCATGAGAATAGGGGTATGTTCCTGAAGTTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCGGAGTCCATGAGAATAGGGGTATGTTCCTGAAGTTTGTC  50

seq1  CATTAGAGCCACGGGACAGCAGAGTAAGAAAGTTTGGATTTTCCACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGCCACGGGACAGCAGAGTAAGAAAGTTTGGATTTTCCACACAT  100

seq1  GGCTCAGAATAGGACCATAGGGAAGAGTTAAAATATTAATAATCAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAATAGGACCATAGGGAAGAGTTAAAATATTAATAATCAGACAT  150

seq1  CAAAAATGCTCTCTTGCTATTTATGAAGAACACTTGTAAAACAGACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGCTCTCTTGCTATTTATGAAGAACACTTGTAAAACAGACATCA  200

seq1  CTGAAAGTCTATGAAATGTCCAGTTAGTATTGATTTTGTGTTTACTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCTATGAAATGTCCAGTTAGTATTGATTTTGTGTTTACTGGAT  250

seq1  TTCAAAGGAAGTACGTTCATTAATACAGTCCAACAGTACACTCAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGAAGTACGTTCATTAATACAGTCCAACAGTACACTCAAACATT  300

seq1  ACATAATATAAGGATCATAATAAAATCACTCCTTCACATTCTTTAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATATAAGGATCATAATAAAATCACTCCTTCACATTCTTTAGGGTT  350

seq1  TTCCCATACCCCATGTTTTTTGACATTTTGGTTGTGAGCCTAGCCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATACCCCATGTTTTTTGACATTTTGGTTGTGAGCCTAGCCTTTAA  400

seq1  TGGCTGAATAATCTCTGTAGCCAAAAACAGCCCATGTTTTTACTTATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATAATCTCTGTAGCCAAAAACAGCCCATGTTTTTACTTATTGT  450

seq1  CTCTACCATAATAAGTAAAAACTGTACAAAATAATACATAGGGATATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCATAATAAGTAAAAACTGTACAAAATAATACATAGGGATATTAG  500

seq1  TGCTGATAATACAATCATAACTTTCATATATTTCAAGAAATTTAGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATAATACAATCATAACTTTCATATATTTCAAGAAATTTAGTTTTC  550

seq1  TCTATGTTTGTAAATTTTGTATCATTTTTATTTACAGATTGTGAAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTTGTAAATTTTGTATCATTTTTATTTACAGATTGTGAAACAGT  600

seq1  AGAAATTGAGTAATAAAATTCAAGTATATTATTTTTCAAATTATATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGAGTAATAAAATTCAAGTATATTATTTTTCAAATTATATGCTT  650

seq1  TAGAAAATTACTGTTAAAAACAACGAATTCATGAAATTCTTAGTCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTACTGTTAAAAACAACGAATTCATGAAATTCTTAGTCAAATA  700

seq1  GGTATAAGTAGAAAATATCATCCTAAGTGATATAGCTCAATCACAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGTAGAAAATATCATCCTAAGTGATATAGCTCAATCACAAAAGA  750

seq1  ACACAGATGGTACACTCACACTGATAAGTGGATATTAGCCCAGAAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGGTACACTCACACTGATAAGTGGATATTAGCCCAGAAACTCA  800

seq1  GAATACCCAAAGTACAATTCACAGACCAAATGAAGCTCAAAAAGAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCAAAGTACAATTCACAGACCAAATGAAGCTCAAAAAGAAGGAA  850

seq1  GAACAAAGTATGGATACTTCGGTCCTTCTTAGATAGGGAACAAAATAACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTATGGATACTTCGGTCCTTCTTAGATAGGGAACAAAATAACG  900

seq1  AGAGACAAAGTGTGGAGGAGTACACTGATAGATAGGGCAAAACACACCAC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGACAAAGTGTGGAGGAGTACACTGATAGATA-GGCAAAACACACCAC  949

seq1  TCAAATTTATAGATATGGAGTTGCGCAATGGGAGGAAATACAGATACAAA  1000
      || ||||||||||||||||||||| | |||||||| ||||||||||| ||
seq2  TC-AATTTATAGATATGGAGTTGC-CCATGGGAGG-AATACAGATAC-AA  995

seq1  GTGTAGAGCAGAGACTGAGGAAATGACCATCCA  1033
      ||||| |||||| |||||||||  |||||||||
seq2  GTGTA-AGCAGAAACTGAGGAATAGACCATCCA  1027


| Home | SequenceCutter | Blast | Download |