BAC Information

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BAC

Clone NameB6Ng01-153J01
Chromosome15 (Build37)
Map Location 21,072,111 - 21,073,290
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153J01.bB6Ng01-153J01.g
ACCDH948842DH948843
length4271,191
definitionDH948842|Mus musculus domesticus DNA, BAC clone: B6Ng01-153J01, 5' end.DH948843|Mus musculus domesticus DNA, BAC clone: B6Ng01-153J01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aggacttaatggaaccaactttttcttgggaaaaaaagacagagttcaga
tgtcttaagttgagtacaaaatttcttgtatagatttctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctgtgtgtgtatgtgtgtgtatatatatatatattatatatttatacac
atatatatttgtgtggatctctctctctctatctctcttttttttttttt
cttgtattgcgccgtgtgctctcacagggcgctacacacactctgtccca
cacgcggggtggctatacctctctctgtgtgtctgtttcgcttttttctt
tgcgtttgcgtataaaagagatgcaaacacacacacacagataaagagtg
tgtgtgtttatccccacggacgtgtga

gaattcagcccccattcataacattgtaggaaagaactgattcttacaaa
ttgtaatctctcttccaagtattcttcaaagtgtgcatgctcttgcatat
aactatatgtaacaattaaacactaattaaaagattaaattgcatgatgt
tctggccttttggtttaagaagcaatactttattttgttatataaaacct
tatgacaaggtctactatttataaaacaaataatcttgttaatttgattt
atctattttatttgaacatagcatcagctcatttaatatttctttatttt
gttttttaattatttcaaagattgggacatctgtgtaaattcatactgat
aatatcactgtaaaaggagtagctagcaagagataactgaatactcaaaa
ggaaacagctttctttgacatttagcattctcacactgattttgtttgta
ttgcaatgcatctttaagtaatttttttgaggggaattttcttgaactaa
ccgcctatggtttgtcttcaaggagacatataaggtgatatgtcaccaaa
catgtacattctctttattgaagcaataaatgggatataaataagtatag
gaaatagtcaatcttaagcaattatagatgtgaatcatgtgacgtcattg
tgatgaggcctcagaacttcgttttacataggtttgggtgagtcttcaac
ttaccattgggttcttaaacaggatattgacattcttttataaagagtga
caaaagagtatctacgtagatcctttgtgaagtttaaacagctctaaaag
ggtcgtcagcaagtgtacacagtaaacacacaattgaactttcttgagta
ctgacttttgcttagcttattcacaatcgtaatcctgctccagaggatat
atttttaaaatcattatgtattcactcacattatcaccaggaactatttt
tccttatatatatagtcaggtcagtaacaaacatcacatcaacatctata
tccaattcttatagcatatactacatttaattctaagtgcttgaaggcac
ctaattggacctttacttcaataattatacaggacccccaagtagaggtc
aggaatttatatatccgggttaattgagatggaaacccaatatagaaaac
ccagtcagctgctgtctcaatttccaaggctttttaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21072111_21073290
seq2: B6Ng01-153J01.g_69_1259

seq1  GAATTCAGCCCCCATTCATAACATTGTAGGAAAGAACTGATTCTTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCCCATTCATAACATTGTAGGAAAGAACTGATTCTTACAAA  50

seq1  TTGTAATCTCTCTTCCAAGTATTCTTCAAAGTGTGCATGCTCTTGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATCTCTCTTCCAAGTATTCTTCAAAGTGTGCATGCTCTTGCATAT  100

seq1  AACTATATGTAACAATTAAACACTAATTAAAAGATTAAATTGCATGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATGTAACAATTAAACACTAATTAAAAGATTAAATTGCATGATGT  150

seq1  TCTGGCCTTTTGGTTTAAGAAGCAATACTTTATTTTGTTATATAAAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTTTTGGTTTAAGAAGCAATACTTTATTTTGTTATATAAAACCT  200

seq1  TATGACAAGGTCTACTATTTATAAAACAAATAATCTTGTTAATTTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAGGTCTACTATTTATAAAACAAATAATCTTGTTAATTTGATTT  250

seq1  ATCTATTTTATTTGAACATAGCATCAGCTCATTTAATATTTCTTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTATTTGAACATAGCATCAGCTCATTTAATATTTCTTTATTTT  300

seq1  GTTTTTTAATTATTTCAAAGATTGGGACATCTGTGTAAATTCATACTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAATTATTTCAAAGATTGGGACATCTGTGTAAATTCATACTGAT  350

seq1  AATATCACTGTAAAAGGAGTAGCTAGCAAGAGATAACTGAATACTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACTGTAAAAGGAGTAGCTAGCAAGAGATAACTGAATACTCAAAA  400

seq1  GGAAACAGCTTTCTTTGACATTTAGCATTCTCACACTGATTTTGTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGCTTTCTTTGACATTTAGCATTCTCACACTGATTTTGTTTGTA  450

seq1  TTGCAATGCATCTTTAAGTAATTTTTTTGAGGGGAATTTTCTTGAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGCATCTTTAAGTAATTTTTTTGAGGGGAATTTTCTTGAACTAA  500

seq1  CCGCCTATGGTTTGTCTTCAAGGAGACATATAAGGTGATATGTCACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTATGGTTTGTCTTCAAGGAGACATATAAGGTGATATGTCACCAAA  550

seq1  CATGTACATTCTCTTTATTGAAGCAATAAATGGGATATAAATAAGTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACATTCTCTTTATTGAAGCAATAAATGGGATATAAATAAGTATAG  600

seq1  GAAATAGTCAATCTTAAGCAATTATAGATGTGAATCATGTGACGTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTCAATCTTAAGCAATTATAGATGTGAATCATGTGACGTCATTG  650

seq1  TGATGAGGCCTCAGAACTTCGTTTTACATAGGTTTGGGTGAGTCTTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGCCTCAGAACTTCGTTTTACATAGGTTTGGGTGAGTCTTCAAC  700

seq1  TTACCATTGGGTTCTTAAACAGGATATTGACATTCTTTTATAAAGAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTGGGTTCTTAAACAGGATATTGACATTCTTTTATAAAGAGTGA  750

seq1  CAAAAGAGTATCTACGTAGATCCTTTGTGAAGTTTAAACAGCTCTAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGTATCTACGTAGATCCTTTGTGAAGTTTAAACAGCTCTAAAAG  800

seq1  GGTCGTCAGCAAGTGTACACAGTAAACACACAATTGAACTTCATTGAGTA  850
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  GGTCGTCAGCAAGTGTACACAGTAAACACACAATTGAACTTTCTTGAGTA  850

seq1  CTGACCTTTGCTTAGCTTATTCACAATCGTAATCCTGCTCCAGAGGATAT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTTGCTTAGCTTATTCACAATCGTAATCCTGCTCCAGAGGATAT  900

seq1  A-TTTTAAAATCAATATGTATTCACTCACATTATCA-CAGGAACTAATTT  948
      | ||||||||||| |||||||||||||||||||||| ||||||||| |||
seq2  ATTTTTAAAATCATTATGTATTCACTCACATTATCACCAGGAACTATTTT  950

seq1  TCCTTATAATTATAGTCA-GTCAGATAC-AACATCACATCAACATCTTAT  996
      ||||||||  |||||||| |||||  || ||||||||||||||||| |||
seq2  TCCTTATATATATAGTCAGGTCAGTAACAAACATCACATCAACATC-TAT  999

seq1  AT-CAATCCTTAATAGCCATATACTACATTT-ATTCTAAGTAGCTAG-AG  1043
      || |||| ||| |||| |||||||||||||| ||||||||| ||| | ||
seq2  ATCCAATTCTT-ATAG-CATATACTACATTTAATTCTAAGT-GCTTGAAG  1046

seq1  GCACTTAA-TGGACC-TTACTCAATTAATTATTACA-GACCCCCAAGT--  1088
      |||| ||| |||||| |||||  | |||||| |||| |||||||||||  
seq2  GCACCTAATTGGACCTTTACTTCAATAATTA-TACAGGACCCCCAAGTAG  1095

seq1  AGGTCA-GAATTATTATATCCGTG-TAAATGATAATGATA-CCAATATAG  1135
      |||||| |||||  |||||||| | ||| ||| |  || | |||||||||
seq2  AGGTCAGGAATTTATATATCCGGGTTAATTGAGATGGAAACCCAATATAG  1145

seq1  AAAA-CCAGTCAGCTGCTTGCT-AATTTCCAATGCTTTTTTAAAGGA  1180
      |||| |||||||||||||  || ||||||||| || |||||||||||
seq2  AAAACCCAGTCAGCTGCTGTCTCAATTTCCAAGGC-TTTTTAAAGGA  1191


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