BAC Information

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BAC

Clone NameB6Ng01-153L20
Chromosome15 (Build37)
Map Location 18,614,929 - 18,748,849
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153L20.bB6Ng01-153L20.g
ACCDH948965DH948966
length3201,025
definitionDH948965|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L20, 5' end.DH948966|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,748,528 - 18,748,849)(18,614,929 - 18,615,959)
sequence
ctcctaccttgtttcatcagcttctggaaaacggaagttggttccagcca
aataaccctgaagagcctgtccccctgtccccctttctgtttgttttctg
ctgttatttttctctccctgattctacttcggtctaactcaagctttctc
tcagcgtcacttttaactctggacggcagggaaccaaagaaagcggggag
gggggagcgaactctccctctctctctctctctctctctctgattggctt
tcattcagtggttctgattaaggaagggggggggggaagaaaggaaaggg
tggggggaacccgtcctcac
gaattcattgctttatatctgtagctatgtagcagtttctaattgaccag
ataacttttcttgacagtaccaaacttaattatgctttatgggacttggc
atgtttacactcagaggagtcaggtgctcgaagctacacacccatcactg
ctaactgaccttttcatttttgtcaataggaaaaccagcctggcatcact
ttaaaagaagaaaaataaaacagtgttcaaaaggcagttcccattacttt
tagtctatgaaaaccatttaacaacaggaataaatgacttttatctgaga
agccacaaggaattaattgtgctatcaatatgagaatgaaaagcatttgc
catacacatgtggtagtctgtgttaatcttttagttcatcaaaatcaagg
agtgcgcaaaaggcaaagattgtaactttagctgccaaacagagtgtgaa
tcatttctctcaagattttaaatatccttttttagcttgaagctataaag
ctaccgacctgaatgaaaacagatttaggatgtaacaagaagacaaaatt
taaccagcatatgttaaagtgccttgctgaaacagaacaaaagtttcatg
aataaatattactaaagaaaaatagaactgtgcaatacttgttcatactg
tgttggctaggccttatgctcttaaaggccatgataattctgctagggta
aagatgtagaaattatcaaagcattaaactgattaatgaaggttttctga
aacttactgattaatgccttttttttgtaaaaaaaatctttagcttgagt
ctctggttatgcgcacacatatacgtatgcagatacactgagttacttga
ttttttttccactagattgataatattacaaaaatctcacacacacatac
atgtgtgtacatatatgttggataactataataaaggaaaacagaccata
aaattaaaagagaacagaaagctacatgggaaagtccaaaagtgaaaagt
agaaagagtacgttatatctcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18748528_18748849
seq2: B6Ng01-153L20.b_53_372 (reverse)

seq1  GTGAGGAACGGCTTTCCCCCCACCCTTTCCTTTCTTCCCCCCCCCCCTTC  50
      |||||||  ||  |||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACGGG--TTCCCCCCACCCTTTCCTTTCTTCCCCCCCCCCCTTC  48

seq1  CTTAATCAGAACCACTGAATGAAAGCCAATCAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGAACCACTGAATGAAAGCCAATCAGAGAGAGAGAGAGAGAGA  98

seq1  GAGAGGGAGAGTTCGCTCCCCCCTCCCCGCTTTCTTTGGTTCCCTGCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGAGTTCGCTCCCCCCTCCCCGCTTTCTTTGGTTCCCTGCCGT  148

seq1  CCAGAGTTAAAAGTGACGCTGAGAGAAAGCTTGAGTTAGACCGAAGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTAAAAGTGACGCTGAGAGAAAGCTTGAGTTAGACCGAAGTAGA  198

seq1  ATCAGGGAGAGAAAAATAACAGCAGAAAACAAACAGAAAGGGGGACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAGAGAAAAATAACAGCAGAAAACAAACAGAAAGGGGGACAGGG  248

seq1  GGACAGGCTCTTCAGGGTTATTTGGCTGGAACCAACTTCCGTTTTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTCTTCAGGGTTATTTGGCTGGAACCAACTTCCGTTTTCCAGA  298

seq1  AGCTGATGAAACAAGGTAGGAG  322
      ||||||||||||||||||||||
seq2  AGCTGATGAAACAAGGTAGGAG  320

seq1: chr15_18614929_18615959
seq2: B6Ng01-153L20.g_68_1092

seq1  GAATTCATTGCTTTATATCTGTAGCTATGTAGCAGTTTCTAATTGACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTTTATATCTGTAGCTATGTAGCAGTTTCTAATTGACCAG  50

seq1  ATAACTTTTCTTGACAGTACCAAACTTAATTATGCTTTATGGGACTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTCTTGACAGTACCAAACTTAATTATGCTTTATGGGACTTGGC  100

seq1  ATGTTTACACTCAGAGGAGTCAGGTGCTCGAAGCTACACACCCATCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACACTCAGAGGAGTCAGGTGCTCGAAGCTACACACCCATCACTG  150

seq1  CTAACTGACCTTTTCATTTTTGTCAATAGGAAAACCAGCCTGGCATCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGACCTTTTCATTTTTGTCAATAGGAAAACCAGCCTGGCATCACT  200

seq1  TTAAAAGAAGAAAAATAAAACAGTGTTCAAAAGGCAGTTCCCATTACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAGAAAAATAAAACAGTGTTCAAAAGGCAGTTCCCATTACTTT  250

seq1  TAGTCTATGAAAACCATTTAACAACAGGAATAAATGACTTTTATCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATGAAAACCATTTAACAACAGGAATAAATGACTTTTATCTGAGA  300

seq1  AGCCACAAGGAATTAATTGTGCTATCAATATGAGAATGAAAAGCATTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAAGGAATTAATTGTGCTATCAATATGAGAATGAAAAGCATTTGC  350

seq1  CATACACATGTGGTAGTCTGTGTTAATCTTTTAGTTCATCAAAATCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATGTGGTAGTCTGTGTTAATCTTTTAGTTCATCAAAATCAAGG  400

seq1  AGTGCGCAAAAGGCAAAGATTGTAACTTTAGCTGCCAAACAGAGTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGCAAAAGGCAAAGATTGTAACTTTAGCTGCCAAACAGAGTGTGAA  450

seq1  TCATTTCTCTCAAGATTTTAAATATCCTTTTTTAGCTTGAAGCTATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCTCAAGATTTTAAATATCCTTTTTTAGCTTGAAGCTATAAAG  500

seq1  CTACCGACCTGAATGAAAACAGATTTAGGATGTAACAAGAAGACAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGACCTGAATGAAAACAGATTTAGGATGTAACAAGAAGACAAAATT  550

seq1  TAACCAGCATATGTTAAAGTGCCTTGCTGAAACAGAACAAAAGTTTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCATATGTTAAAGTGCCTTGCTGAAACAGAACAAAAGTTTCATG  600

seq1  AATAAATATTACTAAAGAAAAATAGAACTGTGCAATACTTGTTCATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTACTAAAGAAAAATAGAACTGTGCAATACTTGTTCATACTG  650

seq1  TGTTGGCTAGGCCTTATGCTCTTAAAGGCCATGATAATTCTGCTAGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTAGGCCTTATGCTCTTAAAGGCCATGATAATTCTGCTAGGGTA  700

seq1  AAGATGTAGAAATTATCAAAGCATTAAACTGATTAATGAAGGTTTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGAAATTATCAAAGCATTAAACTGATTAATGAAGGTTTTCTGA  750

seq1  AACTTACTGATTAATGCCTTTTTTTTGTAAAAAAAATCTTTAGCTTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTGATTAATGCCTTTTTTTTGTAAAAAAAATCTTTAGCTTGAGT  800

seq1  CTCTGGTTATGCGCACACATATACGTATGCAGATACACTGAGTTACTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTATGCGCACACATATACGTATGCAGATACACTGAGTTACTTGA  850

seq1  TTTTTTTTCCACTAGATTGATAATATTACAAAAATCTCACACACACATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCACTAGATTGATAATATTACAAAAATCTCACACACACATAC  900

seq1  ATGTGTGTACATATATGTTGGATAACTATAATAAAGGAAAACAGACCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTACATATATGTTGGATAACTATAATAAAGGAAAACAGACCATA  950

seq1  AAATTAAAAGAGAACAAGATAGCTACATGGGAAGGTCCAAAAGGTGAAAA  1000
      ||||||||||||||| ||| ||||||||||||| |||||||| ||| |||
seq2  AAATTAAAAGAGAAC-AGAAAGCTACATGGGAAAGTCCAAAA-GTG-AAA  997

seq1  AGTAGAAAGAAGTTACGTTATAATCTCAAAT  1031
      ||||||||||   |||||||| |||||||||
seq2  AGTAGAAAGA--GTACGTTAT-ATCTCAAAT  1025