BAC Information

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BAC

Clone NameB6Ng01-154A11
Chromosome15 (Build37)
Map Location 102,444,184 - 102,629,612
singlet/doubletdoublet
Overlap geneAtf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
Upstream geneEG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154A11.bB6Ng01-154A11.g
ACCDH949181DH949182
length1,248931
definitionDH949181|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A11, 5' end.DH949182|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,628,354 - 102,629,612)(102,444,184 - 102,445,112)
sequence
gaattcactaaaggacagagtcagcttagcctattacagctaagaggctt
tgggaaaaggtcaaggggtttcaagagtcatattgcatatgaactcctct
gttactttcatacttccactacaagattctcaacttcttcaaagggctgg
ctctcgacctgagagccatccagagaacctgacattaaatatgcactcca
taaatatattaccaaaaggcagaagcaaggaaagggaaggttggaagaac
tgaggaattgtagggaatagcaaaggctgggaagaaactaggaggaccct
caaaaggacatacaggctatattcaacagaaggaggaaggacaggcactg
tcagggagggatactagaaagaaccaggggctacctaatggacccaggag
agaggtagggtctcagagaagaaaagagggctactgggaaatttctgtgc
tagaggcacctgtttagtttcaacactcagggctgcctgtcagaaaaggt
aactcctccaggccttacagataagtcagggtctttgtcaggtgctgagg
ctacaaggctgaggagagcttagcacaacgcagacaaaagggagacaggt
atttattcaaaaaacatcctgcagccaatccccgtggatggaggagccag
ctttggcaggtgctgttctctgaagtcactagacaagccaggccagtgga
aggaattcggggagcacataggagccactgtgcccaagacatgatctcat
tgtgctaagcatctgggtacccacctcaacctggagccagttacaaaagg
ggtatgactgggacaagcgtcagggtactctgggacaggagacaggttaa
atccttcatgtgcagtgtgggttggttttgttctagaatcatccaagcac
tgtggccctcatagggaaagtcggtagaattgggacagccagggtttttg
taacgttccatgttcatgtgagacacttgagctctgggagcagtggctcc
tcactgaccttttctagaactcaccaccgtcagcctctctgccctgactt
ggcaccctatgcccacagcaagcaggcagcttagccacctggagaggcca
gaaggagttgcagtacctacctaacatgcatgagaaccctgagttgattc
caagcactacagacatacccctgtaacttacttctgggagtggaccagat
gatccagccttcctgagcttgaagcacttccagcccacctgtgggctt
gaattccagtttcagtgagacataatcttcctcaaaaaataaaggtaata
aaggacattaacctttggcctccgtatgcaaacacaggaatacaaacata
atccacatatacagacaaagcacacacacatacacacacacacacttcaa
aacatgcaaacactttgttttgtacaggtatggcagcaataaataataaa
taaaatttgttttgttagccaggcagtggtggcgcacgcctttaatccca
gcacttgggaggcagaggcaggtggatttctgagttcgaggccagcctgg
tctacaaagtgagttccaggacagccagagctacacagagaaaccctgtc
tcgaaaaaaaacaaaacaaacaaacaaacaaacaaacaaaaaatttgttt
tttctgattattttcagataaagtatgacccctaaaacaacagtgatcaa
cacagtttatttccttttttagatatttgtttattagtgtgtatcttttt
gtgaaagagcttcaagtatcccatgctggcctcaaattcattacataagc
ccaggctggcttcaaacttctaatcttcctacttctatcacccaagtact
gggataacaggcattactactacttggtgttagagaccaaacctagggct
gtatgcatgataagccatcactccaccaagtgagctgcattcctaatgcc
tcccccactccctgtttagataaggttttgttatatttcacagtctagtc
tttaacttgcattcctcttgaagcatcagcttcccaagtagctgggatta
taggcatagactactgtgtcaggttcagaacactgatctttaaaggacca
atttaaaattcttatggatttagaaaagaacaaataaggatgtttttgtt
tgggggggttgtttttatagggatttttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102628354_102629612
seq2: B6Ng01-154A11.b_44_1291 (reverse)

seq1  AAGCC--CAGGCTGGCTGGAA-TGCTTTCTGAAGCTCAGGATGACCTTGA  47
      |||||  ||||  |||||||| ||||   | |||||||||| |  || ||
seq2  AAGCCCACAGGTGGGCTGGAAGTGCT---TCAAGCTCAGGAAG-GCTGGA  46

seq1  TCATCCTTGCTTCCACCTCCCACGAGTTAGGTTTACAGGTGTATGTCTGG  97
      |||||  ||  |||| ||||||  ||| ||  ||||||| ||||||||| 
seq2  TCATC--TG-GTCCA-CTCCCAGAAGTAAG--TTACAGGGGTATGTCTG-  89

seq1  TTAGTGCTTGGGATCAAACTCAGGG-TCTCATGCATGTTAGGTAAGTACC  146
       |||||||||| ||| ||||||||| |||||||||||||||||| ||| |
seq2  -TAGTGCTTGGAATC-AACTCAGGGTTCTCATGCATGTTAGGTAGGTA-C  136

seq1  TGCAACTCCTTTCTGGCCCTCT-CAGGGTGCTAAGCTGCCTGCTTGCTGT  195
      ||||||||| |||||| ||||| ||||  |||||||||||||||||||| 
seq2  TGCAACTCC-TTCTGG-CCTCTCCAGGTGGCTAAGCTGCCTGCTTGCTG-  183

seq1  TGGGCATAGGGTGCCAAGTCAGGGCAGGAGAGGCTGACGGTGGTGAGTTC  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGGCATAGGGTGCCAAGTCAGGGCA-GAGAGGCTGACGGTGGTGAGTTC  232

seq1  TTAGAAAGGTCAGTGAGGAGCCACTGCTCCCAGAGCTCAAGTGTCTCACA  295
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGGTCAGTGAGGAGCCACTGCTCCCAGAGCTCAAGTGTCTCACA  282

seq1  TGAACATGGAACGTTACAAAAACCCTGGCTGT-CCAATTCTACCGACTTT  344
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAACATGGAACGTTACAAAAACCCTGGCTGTCCCAATTCTACCGACTTT  332

seq1  CCCTATGAGGGCCACAGTGCTTGGATGATTCTAGAAC-AAACCAACCCAC  393
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCTATGAGGGCCACAGTGCTTGGATGATTCTAGAACAAAACCAACCCAC  382

seq1  ACTGCACATGAAGGATTTAACCTGTCTCCTGTCCCAGAGTACCCTGACGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACATGAAGGATTTAACCTGTCTCCTGTCCCAGAGTACCCTGACGC  432

seq1  TTGTCCCAGTCATACCCCTTTTGTAACTGGCTCCAGGTTGAGGTGGGTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCAGTCATACCCCTTTTGTAACTGGCTCCAGGTTGAGGTGGGTAC  482

seq1  CCAGATGCTTAGCACAATGAGATCATGTCTTGGGCACAGTGGCTCCTATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCTTAGCACAATGAGATCATGTCTTGGGCACAGTGGCTCCTATG  532

seq1  TGCTCCCCGAATTCCTTCCACTGGCCTGGCTTGTCTAGTGACTTCAGAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCGAATTCCTTCCACTGGCCTGGCTTGTCTAGTGACTTCAGAGA  582

seq1  ACAGCACCTGCCAAAGCTGGCTCCTCCATCCACGGGGATTGGCTGCAGGA  643
      |||||||||||||||||||                   ||||||||||||
seq2  ACAGCACCTGCCAAAGCTGNNNNNNNNNNNNNNNNNNNTTGGCTGCAGGA  632

seq1  TGTTTTTTGAATAAATACCTGTCTCCCTTTTGTCTGCGTTGTGCTAAGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGAATAAATACCTGTCTCCCTTTTGTCTGCGTTGTGCTAAGCT  682

seq1  CTCCTCAGCCTTGTAGCCTCAGCACCTGACAAAGACCCTGACTTATCTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGCCTTGTAGCCTCAGCACCTGACAAAGACCCTGACTTATCTGT  732

seq1  AAGGCCTGGAGGAGTTACCTTTTCTGACAGGCAGCCCTGAGTGTTGAAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGGAGGAGTTACCTTTTCTGACAGGCAGCCCTGAGTGTTGAAAC  782

seq1  TAAACAGGTGCCTCTAGCACAGAAATTTCCCAGTAGCCCTCTTTTCTTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGTGCCTCTAGCACAGAAATTTCCCAGTAGCCCTCTTTTCTTCT  832

seq1  CTGAGACCCTACCTCTCTCCTGGGTCCATTAGGTAGCCCCTGGTTCTTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCCTACCTCTCTCCTGGGTCCATTAGGTAGCCCCTGGTTCTTTC  882

seq1  TAGTATCCCTCCCTGACAGTGCCTGTCCTTCCTCCTTCTGTTGAATATAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCCCTCCCTGACAGTGCCTGTCCTTCCTCCTTCTGTTGAATATAG  932

seq1  CCTGTATGTCCTTTTGAGGGTCCTCCTAGTTTCTTCCCAGCCTTTGCTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTCCTTTTGAGGGTCCTCCTAGTTTCTTCCCAGCCTTTGCTAT  982

seq1  TCCCTACAATTCCTCAGTTCTTCCAACCTTCCCTTTCCTTGCTTCTGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACAATTCCTCAGTTCTTCCAACCTTCCCTTTCCTTGCTTCTGCCT  1032

seq1  TTTGGTAATATATTTATGGAGTGCATATTTAATGTCAGGTTCTCTGGATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATATATTTATGGAGTGCATATTTAATGTCAGGTTCTCTGGATG  1082

seq1  GCTCTCAGGTCGAGAGCCAGCCCTTTGAAGAAGTTGAGAATCTTGTAGTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGGTCGAGAGCCAGCCCTTTGAAGAAGTTGAGAATCTTGTAGTG  1132

seq1  GAAGTATGAAAGTAACAGAGGAGTTCATATGCAATATGACTCTTGAAACC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGAAAGTAACAGAGGAGTTCATATGCAATATGACTCTTGAAACC  1182

seq1  CCTTGACCTTTTCCCAAAGCCTCTTAGCTGTAATAGGCTAAGCTGACTCT  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCTTTTCCCAAAGCCTCTTAGCTGTAATAGGCTAAGCTGACTCT  1232

seq1  GTCCTTTAGTGAATTC  1259
      ||||||||||||||||
seq2  GTCCTTTAGTGAATTC  1248

seq1: chr15_102444184_102445112
seq2: B6Ng01-154A11.g_68_998

seq1  GAATTCCAGTTTCAGTGAGACATAATCTTCCTCAAAAAATAAAGGTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTCAGTGAGACATAATCTTCCTCAAAAAATAAAGGTAATA  50

seq1  AAGGACATTAACCTTTGGCCTCCGTATGCAAACACAGGAATACAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATTAACCTTTGGCCTCCGTATGCAAACACAGGAATACAAACATA  100

seq1  ATCCACATATACAGACAAAGCACACACACATACACACACACACACTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATATACAGACAAAGCACACACACATACACACACACACACTTCAA  150

seq1  AACATGCAAACACTTTGTTTTGTACAGGTATGGCAGCAATAAATAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAAACACTTTGTTTTGTACAGGTATGGCAGCAATAAATAATAAA  200

seq1  TAAAATTTGTTTTGTTAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGTTTTGTTAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCCA  250

seq1  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGG  300

seq1  TCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTC  350

seq1  TCGAAAAAAAACAAAACAAACAAACAAACAAACAAACAAAAAATTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAAAAAACAAAACAAACAAACAAACAAACAAACAAAAAATTTGTTT  400

seq1  TTTCTGATTATTTTCAGATAAAGTATGACCCCTAAAACAACAGTGATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTATTTTCAGATAAAGTATGACCCCTAAAACAACAGTGATCAA  450

seq1  CACAGTTTATTTCCTTTTTTAGATATTTGTTTATTAGTGTGTATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTATTTCCTTTTTTAGATATTTGTTTATTAGTGTGTATCTTTTT  500

seq1  GTGAAAGAGCTTCAAGTATCCCATGCTGGCCTCAAATTCATTACATAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGAGCTTCAAGTATCCCATGCTGGCCTCAAATTCATTACATAAGC  550

seq1  CCAGGCTGGCTTCAAACTTCTAATCTTCCTACTTCTATCACCCAAGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCTTCAAACTTCTAATCTTCCTACTTCTATCACCCAAGTACT  600

seq1  GGGATAACAGGCATTACTACTACTTGGTGTTAGAGACCAAACCTAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAACAGGCATTACTACTACTTGGTGTTAGAGACCAAACCTAGGGCT  650

seq1  GTATGCATGATAAGCCATCACTCCACCAAGTGAGCTGCATTCCTAATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGATAAGCCATCACTCCACCAAGTGAGCTGCATTCCTAATGCC  700

seq1  TCCCCCACTCCCTGTTTAGATAAGGTTTTGTTATATTTCACAGTCTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACTCCCTGTTTAGATAAGGTTTTGTTATATTTCACAGTCTAGTC  750

seq1  TTTAACTTGCATTCCTCTTGAAGCATCAGCTTCCCAAGTAGCTGGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTGCATTCCTCTTGAAGCATCAGCTTCCCAAGTAGCTGGGATTA  800

seq1  TAGGCATAGACTACTGTGTCAGGTTCAGAACACTGATCTTT-AAGGACCA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGGCATAGACTACTGTGTCAGGTTCAGAACACTGATCTTTAAAGGACCA  850

seq1  ATTTAAAATTCTTATGGATTTAGAAAAGAACAAATAAGGATGTTTTTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATTCTTATGGATTTAGAAAAGAACAAATAAGGATGTTTTTGTT  900

seq1  TGAGGGGGTTG-TTTTATAGGGATTTTTATG  929
      || |||||||| |||||||||||||||||||
seq2  TGGGGGGGTTGTTTTTATAGGGATTTTTATG  931