BAC Information

Click to search

BAC

Clone NameB6Ng01-154B13
Chromosome15 (Build37)
Map Location 102,057,510 - 102,195,586
singlet/doubletdoublet
Overlap geneItgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Upstream geneGrasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740
Downstream geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B13.bB6Ng01-154B13.g
ACCDH949233DH949234
length1,0861,111
definitionDH949233|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B13, 5' end.DH949234|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,057,510 - 102,058,580)(102,194,454 - 102,195,586)
sequence
gaattccaagcctttcaattcataagaagtatgtttctgttgcatgttgt
cacagaatacgtaactggccagtctactttctcacatgcagaagcacgaa
ctcccacaaggacatcttcctctgagctcatgggtcacgggttctgttca
cgtatgctcagaaacttacacgcatatgagtcacacattggaatcctgtc
tgtccaaattcagtcacacatgagaagggacagtattcccccccccccaa
aaaaaaatcacaaatctacctacacaacgcacatcacacatgttcaggac
cacacacacccatgtttaccagttgtttgcaccatgcacagctgggatgt
gagagaatacacttctggcaggaaggaactggctggcaggatccctgcag
agacaggtcaggatcctcccattctgcggcctccccagaggatgtaatct
tggtatctaactcactctgacctccgcccagaaccagcagaaaaatgaga
acagttgatgaatccaccatggcctgtgacgagatataaaggcagacaca
caaatcctcagggagggcccgagagccctctaaacttagcttgtggttgc
caagctgaatcttaccccaactccatctctctcctcagagtttcacgaag
ccccctgtggattcagcagctttttccaaaatggtggggaagtgacaggt
gccagagcaagggagagacccacttcaggtacccaggggtggacagagta
gcctgagaaaagggtctgtgggcttgcagagtctactcaatggttaagag
cactgtggagcttaagagatgggtttagccatctaaaaccacttggctgc
ttctttcagaggatgccctcccatccttgggtccattcccagcacccctg
gtggcacgccagcttaacggctttcctgtaacctctagttccagagaatc
caacacattcttgggcccttccatagtacaatcctatatggtggtggctt
atgaacctcttatggtaaaaagcctcctactcataaataaaatcaaaaaa
ttcttagggggtgagaaaaaaggcctgcagtgttct
gaattccaggatagccagagctacattgagaaacccggtctcaaaaacaa
accaacaaaatctctgttctgggtgccctcactcaggtcccaggagtgac
tagtctttgctgattgactcatcagaaagctgactagttcaacctgaagg
agagagtgtgtgtgtatgtgtacctgcatgtacatatgcacaagagcgca
tgcacacacacaagctggatcatcttagtacttagtccagatgagaaatg
gtgtctgtaaggctatgagataaggacttgatgactgagtttgaggaagt
gccatacaagccagtgggtggacatgctctataaccagataacccaggaa
tattgatctactttcagctgcattgtttgcagattgttatcatgcccctt
tccccatcagactctaaatttatttattattatgtaaatgtatgaccatg
ggcacatgtgtgccactgctcctgtgtgtgggccagaggaaaacgtttgg
gaatcagttttctaattccaccttggattctgggaattaaattcaagtgg
gcagactttcctgggaagctgctgaacctttatcatcatcatcattacta
ttactgttgttattattattaattatttttactcaacagactatgttgcg
ctatcattaaacaatagttttgaggaagcaggaggagagaggtgcatata
agtcttgggtctgcccagggcagtaatggtgtcaatgatatggacagcat
gcctgccctgccagcgtggcactcgtgcctgggggaggggcagttcagag
actttctggaaagacacaggcttggggaagcatttggcaatgggatgtat
catggatgctaggtttcaggttcctctactccctgtggtccaccaacata
aagacaccccactctctccattctttccttttccttccttttaatcatta
ttatctattatgtatgtatttatttatttattattgagacaggtctttct
tatagcctgtctgtcctgactaactatgtagacagcttgcttcaacttca
gagatctgctagctctgtctcccagtgctggttaccggcaggtctgtttc
tttactagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102057510_102058580
seq2: B6Ng01-154B13.b_43_1128

seq1  GAATTCCAAGCCTTTCAATTCATAAGAAGTATGTTTCTGTTGCATGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCTTTCAATTCATAAGAAGTATGTTTCTGTTGCATGTTGT  50

seq1  CACAGAATACGTAACTGGCCAGTCTACTTTCTCACATGCAGAAGCACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATACGTAACTGGCCAGTCTACTTTCTCACATGCAGAAGCACGAA  100

seq1  CTCCCACAAGGACATCTTCCTCTGAGCTCATGGGTCACGGGTTCTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACAAGGACATCTTCCTCTGAGCTCATGGGTCACGGGTTCTGTTCA  150

seq1  CGTATGCTCAGAAACTTACACGCATATGAGTCACACATTGGAATCCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGCTCAGAAACTTACACGCATATGAGTCACACATTGGAATCCTGTC  200

seq1  TGTCCAAATTCAGTCACACATGAGAAGGGACAGTATTCCCCCCCCCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAATTCAGTCACACATGAGAAGGGACAGTATTCCCCCCCCCCCAA  250

seq1  AAAAAAATCACAAATCTACCTACACAACGCACATCACACATGTTCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCACAAATCTACCTACACAACGCACATCACACATGTTCAGGAC  300

seq1  CACACACACCCATGTTTACCAGTTGTTTGCACCATGCACAGCTGGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCCATGTTTACCAGTTGTTTGCACCATGCACAGCTGGGATGT  350

seq1  GAGAGAATACACTTCTGGCAGGAAGGAACTGGCTGGCAGGATCCCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATACACTTCTGGCAGGAAGGAACTGGCTGGCAGGATCCCTGCAG  400

seq1  AGACAGGTCAGGATCCTCCCATTCTGCGGCCTCCCCAGAGGATGTAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTCAGGATCCTCCCATTCTGCGGCCTCCCCAGAGGATGTAATCT  450

seq1  TGGTATCTAACTCACTCTGACCTCCGCCCAGAACCAGCAGAAAAATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTAACTCACTCTGACCTCCGCCCAGAACCAGCAGAAAAATGAGA  500

seq1  ACAGTTGATGAATCCACCATGGCCTGTGACGAGATATAAAGGCAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATGAATCCACCATGGCCTGTGACGAGATATAAAGGCAGACACA  550

seq1  CAAATCCTCAGGGAGGGCCCGAGAGCCCTCTAAACTTAGCTTGTGGTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTCAGGGAGGGCCCGAGAGCCCTCTAAACTTAGCTTGTGGTTGC  600

seq1  CAAGCTGAATCTTACCCCAACTCCATCTCTCTCCTCAGAGTTTCACGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAATCTTACCCCAACTCCATCTCTCTCCTCAGAGTTTCACGAAG  650

seq1  CCCCCTGTGGATTCAGCAGC-TTTTCCAAAATGGT-GGGAAGTGACAGGT  698
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CCCCCTGTGGATTCAGCAGCTTTTTCCAAAATGGTGGGGAAGTGACAGGT  700

seq1  GCCAGAGCAAGGGAGAGA-CCACTTCAGGTACCCA-GGGTGGACAGAGTA  746
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  GCCAGAGCAAGGGAGAGACCCACTTCAGGTACCCAGGGGTGGACAGAGTA  750

seq1  GCCTGAG-AAAGGGTCTGTGGGC-TGCAGAGTCTACTCAATGGTTAAGAG  794
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCTGAGAAAAGGGTCTGTGGGCTTGCAGAGTCTACTCAATGGTTAAGAG  800

seq1  CACTGTGGAGCTGAAGAGAT-GGTTTAGCCATCT-AAACCAC-TGGCTGC  841
      |||||||||||| ||||||| ||||||||||||| ||||||| |||||||
seq2  CACTGTGGAGCTTAAGAGATGGGTTTAGCCATCTAAAACCACTTGGCTGC  850

seq1  -TCTTCCAGAGGATGCCCTCCCATCCTGGGTTCCATTCCCAGCACCCAT-  889
       |||| ||||||||||||||||||||| || |||||||||||||||| | 
seq2  TTCTTTCAGAGGATGCCCTCCCATCCTTGGGTCCATTCCCAGCACCCCTG  900

seq1  GTGGCACGCCAGC-TCACGGC-TTCCTGTAA-CTCTAGTTCCAGAGGATC  936
      ||||||||||||| | ||||| ||||||||| |||||||||||||| |||
seq2  GTGGCACGCCAGCTTAACGGCTTTCCTGTAACCTCTAGTTCCAGAGAATC  950

seq1  CAACACACTCTTGGG-CCTCCAAGAGTACCAGTCTTACAT-GTGGT-GCA  983
      ||||||| ||||||| ||| | | |||| || || || || ||||| || 
seq2  CAACACATTCTTGGGCCCTTCCATAGTA-CAATCCTATATGGTGGTGGCT  999

seq1  TA-GACACACATATGGTAAAAAGCACTCATACTCATAAAATAAAAATCAA  1032
      || ||  | | ||||||||||||| ||| ||||||||||   ||||||||
seq2  TATGAACCTCTTATGGTAAAAAGC-CTCCTACTCATAAA--TAAAATCAA  1046

seq1  TAAAATCTTAGGGGGAG-GAAAAAAAGCATGCAGTGTTCT  1071
       ||| |||||||||| | ||||||| || |||||||||||
seq2  AAAATTCTTAGGGGGTGAGAAAAAAGGCCTGCAGTGTTCT  1086

seq1: chr15_102194454_102195586
seq2: B6Ng01-154B13.g_68_1178 (reverse)

seq1  AAACTAGGTAAAAGAAACAGACACTGCCGGGTAACCCAGCACTGGGGAGA  50
      |||||||   |||||||||||| ||||| ||||| |||||||| ||||||
seq2  AAACTAG--TAAAGAAACAGAC-CTGCC-GGTAA-CCAGCACT-GGGAGA  44

seq1  CAGAGCTAGGCAGATCTCTGAGTTTGAAGCCAGCCTTGTCTACATAGTAA  100
      |||||||| ||||||||||||  ||||||| |||  |||||||||||| |
seq2  CAGAGCTA-GCAGATCTCTGAAGTTGAAGCAAGC--TGTCTACATAGTTA  91

seq1  GTTCCAGGACAGACAGGGCTATAAAGAAAGACCCTGTCTCAAAATAAATA  150
      ||  ||||||||||| |||||| |||||||| ||||||||||    ||||
seq2  GT--CAGGACAGACA-GGCTAT-AAGAAAGA-CCTGTCTCAA---TAATA  133

seq1  AATAAATAAATACATACATAAATAGATAATAAATGATTAAAAGGAAGGAA  200
      ||||||||||||||||||| |||||||||| ||||||||||||||||| |
seq2  AATAAATAAATACATACAT-AATAGATAAT-AATGATTAAAAGGAAGG-A  180

seq1  AAAGGAAAGAAATGGAGAGAGTGGGGTGTCTTTATGTTGGTGGACCACAG  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAG-AATGGAGAGAGTGGGGTGTCTTTATGTTGGTGGACCACAG  229

seq1  GGAGTAGAGGAACCTGAAAACCTAGCATCCATGATACATCCCATTGCCAA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAGTAGAGGAACCTG-AAACCTAGCATCCATGATACATCCCATTGCCAA  278

seq1  ATGCTTCCCCAAGCCTGTGTCTTTCCAGAAAGTCTCTGAACTGCCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCCCAAGCCTGTGTCTTTCCAGAAAGTCTCTGAACTGCCCCTCC  328

seq1  CCCAGGCACGAGTGCCACGCTGGCAGGGCAGGCATGCTGTCCATATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCACGAGTGCCACGCTGGCAGGGCAGGCATGCTGTCCATATCATT  378

seq1  GACACCATTACTGCCCTGGGCAGACCCAAGACTTATATGCACCTCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATTACTGCCCTGGGCAGACCCAAGACTTATATGCACCTCTCTCC  428

seq1  TCCTGCTTCCTCAAAACTATTGTTTAATGATAGCGCAACATAGTCTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCCTCAAAACTATTGTTTAATGATAGCGCAACATAGTCTGTTG  478

seq1  AGTAAAAATAATTAATAATAATAACAACAGTAATAGTAATGATGATGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATAATTAATAATAATAACAACAGTAATAGTAATGATGATGATG  528

seq1  ATAAAGGTTCAGCAGCTTCCCAGGAAAGTCTGCCCACTTGAATTTAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGTTCAGCAGCTTCCCAGGAAAGTCTGCCCACTTGAATTTAATTC  578

seq1  CCAGAATCCAAGGTGGAATTAGAAAACTGATTCCCAAACGTTTTCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCCAAGGTGGAATTAGAAAACTGATTCCCAAACGTTTTCCTCTG  628

seq1  GCCCACACACAGGAGCAGTGGCACACATGTGCCCATGGTCATACATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACACAGGAGCAGTGGCACACATGTGCCCATGGTCATACATTTAC  678

seq1  ATAATAATAAATAAATTTAGAGTCTGATGGGGAAAGGGGCATGATAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAAATAAATTTAGAGTCTGATGGGGAAAGGGGCATGATAACAA  728

seq1  TCTGCAAACAATGCAGCTGAAAGTAGATCAATATTCCTGGGTTATCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAACAATGCAGCTGAAAGTAGATCAATATTCCTGGGTTATCTGGT  778

seq1  TATAGAGCATGTCCACCCACTGGCTTGTATGGCACTTCCTCAAACTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCATGTCCACCCACTGGCTTGTATGGCACTTCCTCAAACTCAGT  828

seq1  CATCAAGTCCTTATCTCATAGCCTTACAGACACCATTTCTCATCTGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTCCTTATCTCATAGCCTTACAGACACCATTTCTCATCTGGACT  878

seq1  AAGTACTAAGATGATCCAGCTTGTGTGTGTGCATGCGCTCTTGTGCATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAAGATGATCCAGCTTGTGTGTGTGCATGCGCTCTTGTGCATAT  928

seq1  GTACATGCAGGTACACATACACACACACTCTCTCCTTCAGGTTGAACTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCAGGTACACATACACACACACTCTCTCCTTCAGGTTGAACTAG  978

seq1  TCAGCTTTCTGATGAGTCAATCAGCAAAGACTAGTCACTCCTGGGACCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTCTGATGAGTCAATCAGCAAAGACTAGTCACTCCTGGGACCTG  1028

seq1  AGTGAGGGCACCCAGAACAGAGATTTTGTTGGTTTGTTTTTGAGACCGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGCACCCAGAACAGAGATTTTGTTGGTTTGTTTTTGAGACCGGG  1078

seq1  TTTCTCAATGTAGCTCTGGCTATCCTGGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  TTTCTCAATGTAGCTCTGGCTATCCTGGAATTC  1111