BAC Information

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BAC

Clone NameB6Ng01-154J02
Chromosome15 (Build37)
Map Location 82,751,760 - 82,877,340
singlet/doubletdoublet
Overlap geneNfam1
Upstream genePolr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20
Downstream geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J02.bB6Ng01-154J02.g
ACCDH949577DH949578
length1,1301,137
definitionDH949577|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J02, 5' end.DH949578|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,876,223 - 82,877,340)(82,751,760 - 82,752,906)
sequence
gaattctaagccccttcactccacctgccggaatgtcacgaagcttcaat
taggttaaaggatcaatttcctttttcctgataaaacctgtgcagtagca
cctgagattcctgaaatgcttccccatgctgatgaggcatgagaagccat
cagccaatgacctttgcacacctggatgtctctgctctcagtcgcccaca
ttttataagccttcaatccccctaagtaaagttgatctgcctcctgactg
caggtcccagtgtggattatccactgtgtggactccaggacttctgaagc
cagggttccacatctctgctcccaatgccctgctggaccatataggccaa
tgatccatgaaagcagggagactcacatgcttgcagtgccctaggaggcc
agaagggggcaccagagtctcaggagctggagttacaggcaggcactgcc
tgacctaggtgctgggaactgaactccagcaagtgcccctaaccactgaa
ccatctctcgggctcagtattttcttttgggaattttacgagtgagtatt
attacgtcatttcctccccttcctcctctcattcctcaaggcctacattt
tcatccccagaacaggaagtgaggggaagaacagacagaagaaagtttgg
acacatttgatttttaagggtattacgctcagtttcatcgctctgactct
tttgatattttctctttttaaccagagaagggctgacctatggacaagtg
ctcctagtgcaaagccaggcatgtacggaataaacctgctactgtagggt
cagaagccctgccatgaaggtgaataagctgaaggtatctactgccaaga
ttttttttcatcaagtaatatatcttaaaggacttagtctgtaacactgg
ctagcctaaaacttgctttgtagccccggctggcctagatgagtagccat
tcctgtcttcagcttctcaagtgctgggaattgtagtcatgagtcctttg
aagggcctgcttcagcattcttcctcctgcagatcttagcttagaagggc
ttgtttcaacatggcttctggggtgttgaatcattggttgaaagtcattc
ttaagaacttctgggaagtcatgaacactt
gaattcctactggcaacagcagccagggagggaggcccagtgaggctcct
ggctgactatgctgatttgtctttgagcttcgtagccaaccacacagtgg
acacatccccagtgaactgagaatgcactgagccagcagtcatcagcaag
ccttcacggtccaggttcacagagtctggcagcccacagacagaatacag
acctgtgatatgggatgaaggagtgcacaaaggtggctgtcaaaatagtg
tcctctgtgctaaccatagctccaggcagggggatgtgcttgggacacag
gagggaccaaggctgtccaaaggggctaagaagagcctaaagaagagcct
aagacatcacccaccacagatattcaaaagaccaaataatgccctactgt
catgaggagataagttgggggtaggccagagtgggagggagtgccagctg
gcaacaacataccccacccccaactatagacaagagcaaacaaagataac
gtccaaagtgaagctctcagcttccttcaccctagcataataccaaactc
ctctcttaccacagcctacctgtgagccacccatgagacaagccataagg
cttaaactggccccattttctggatgtgaacacagaggctccatggaccc
tttgcccaagccatgctctttctactgcatctttcaaagatctgctcttt
tccgtgttctgcagaggtattgctgtaggggcagtgcggagagccggtgc
agcggcgttcagctcccaggggcttcaagggggtggtgggaacccccaac
acccagccctaaactggagtcttctggctgggatcacagccctacgacga
cggagctgctgcccaccagccggccccttggcatccgggccctggatggc
agccagctgggaaaggaagcagcttggctgggcgccagttcacagtgccc
tgagctgtcagccgggaggcagccagcagactgagaccccctgcccctga
acagagccctggcagccaccaggaataggcaagctcttcctccatcaaga
gaatcaggggcccttgtcattggcagccctgagcaggagcaagggacgtt
atcttgcttggtccattatttcagcttagctgtacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82876223_82877340
seq2: B6Ng01-154J02.b_62_1176 (reverse)

seq1  AAGTGTTTCATGACCTTTCCAG-AGTTCTTAAG-ATGACCTTTTCAACCA  48
      ||||| ||||||| ||| |||| |||||||||| |||||  |||||||||
seq2  AAGTG-TTCATGA-CTTCCCAGAAGTTCTTAAGAATGAC--TTTCAACCA  46

seq1  TTGATTTCAAACACCCCAGAAGCCATGTTGGAACAGCCCCTTCCTAAGCT  98
       |||||   ||||||||||||||||||||| ||||  ||||| |||||||
seq2  ATGATT--CAACACCCCAGAAGCCATGTTGAAACAAGCCCTT-CTAAGCT  93

seq1  AAGATCTGCAGGAGGAAG-ATGCTGGAAGCAAGCCCTCCAAAAGGACTCA  147
      |||||||||||||||||| ||||| |||||| ||||| | ||||||||||
seq2  AAGATCTGCAGGAGGAAGAATGCT-GAAGCAGGCCCTTC-AAAGGACTCA  141

seq1  TGACTACAA-TCCCAGCACTTGAGAGGCTG-AGACAGG-ATTGCTACTCA  194
      ||||||||| ||||||||||||||| |||| ||||||| || ||||||||
seq2  TGACTACAATTCCCAGCACTTGAGAAGCTGAAGACAGGAATGGCTACTCA  191

seq1  TTCTAGGCCAGCCTGGGCTACATAGCAAGTTTTAGGCTAGCCAGTGTTAC  244
       |||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  -TCTAGGCCAGCCGGGGCTACAAAGCAAGTTTTAGGCTAGCCAGTGTTAC  240

seq1  AGACTAAGTCCTTTAAGATATATTACTTGATGAAAAAAAATCTTGGCAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGTCCTTTAAGATATATTACTTGATGAAAAAAAATCTTGGCAGT  290

seq1  AGATACCTTCAGCTTATTCACCTTCATGGCAGGGCTTCTGACCCTACAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTTCAGCTTATTCACCTTCATGGCAGGGCTTCTGACCCTACAGT  340

seq1  AGCAGGTTTATTCCGTACATGCCTGGCTTTGCACTAGGAGCACTTGTCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTTATTCCGTACATGCCTGGCTTTGCACTAGGAGCACTTGTCCA  390

seq1  TAGGTCAGCCCTTCTCTGGTTAAAAAGAGAAAATATCAAAAGAGTCAGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGCCCTTCTCTGGTTAAAAAGAGAAAATATCAAAAGAGTCAGAG  440

seq1  CGATGAAACTGAGCGTAATACCCTTAAAAATCAAATGTGTCCAAACTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAAACTGAGCGTAATACCCTTAAAAATCAAATGTGTCCAAACTTTC  490

seq1  TTCTGTCTGTTCTTCCCCTCACTTCCTGTTCTGGGGATGAAAATGTAGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTTCTTCCCCTCACTTCCTGTTCTGGGGATGAAAATGTAGGC  540

seq1  CTTGAGGAATGAGAGGAGGAAGGGGAGGAAATGACGTAATAATACTCACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAATGAGAGGAGGAAGGGGAGGAAATGACGTAATAATACTCACT  590

seq1  CGTAAAATTCCCAAAAGAAAATACTGAGCCCGAGAGATGGTTCAGTGGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAATTCCCAAAAGAAAATACTGAGCCCGAGAGATGGTTCAGTGGTT  640

seq1  AGGGGCACTTGCTGGAGTTCAGTTCCCAGCACCTAGGTCAGGCAGTGCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCACTTGCTGGAGTTCAGTTCCCAGCACCTAGGTCAGGCAGTGCCT  690

seq1  GCCTGTAACTCCAGCTCCTGAGACTCTGGTGCCCCCTTCTGGCCTCCTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAACTCCAGCTCCTGAGACTCTGGTGCCCCCTTCTGGCCTCCTAG  740

seq1  GGCACTGCAAGCATGTGAGTCTCCCTGCTTTCATGGATCATTGGCCTATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCAAGCATGTGAGTCTCCCTGCTTTCATGGATCATTGGCCTATA  790

seq1  TGGTCCAGCAGGGCATTGGGAGCAGAGATGTGGAACCCTGGCTTCAGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGCAGGGCATTGGGAGCAGAGATGTGGAACCCTGGCTTCAGAAG  840

seq1  TCCTGGAGTCCACACAGTGGATAATCCACACTGGGACCTGCAGTCAGGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGTCCACACAGTGGATAATCCACACTGGGACCTGCAGTCAGGAG  890

seq1  GCAGATCAACTTTACTTAGGGGGATTGAAGGCTTATAAAATGTGGGCGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAACTTTACTTAGGGGGATTGAAGGCTTATAAAATGTGGGCGAC  940

seq1  TGAGAGCAGAGACATCCAGGTGTGCAAAGGTCATTGGCTGATGGCTTCTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAGAGACATCCAGGTGTGCAAAGGTCATTGGCTGATGGCTTCTC  990

seq1  ATGCCTCATCAGCATGGGGAAGCATTTCAGGAATCTCAGGTGCTACTGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCATCAGCATGGGGAAGCATTTCAGGAATCTCAGGTGCTACTGCA  1040

seq1  CAGGTTTTATCAGGAAAAAGGAAATTGATCCTTTAACCTAATTGAAGCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTATCAGGAAAAAGGAAATTGATCCTTTAACCTAATTGAAGCTT  1090

seq1  CGTGACATTCC-TCAGGTGGAGTGA  1118
      |||||||||||  ||||||||||||
seq2  CGTGACATTCCGGCAGGTGGAGTGA  1115

seq1: chr15_82751760_82752906
seq2: B6Ng01-154J02.g_65_1201

seq1  GAATTCCTACTGGCAACAGCAGCCAGGGAGGGAGGCCCAGTGAGGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGGCAACAGCAGCCAGGGAGGGAGGCCCAGTGAGGCTCCT  50

seq1  GGCTGACTATGCTGATTTGTCTTTGAGCTTCGTAGCCAACCACACAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTATGCTGATTTGTCTTTGAGCTTCGTAGCCAACCACACAGTGG  100

seq1  ACACATCCCCAGTGAACTGAGAATGCACTGAGCCAGCAGTCATCAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCCCAGTGAACTGAGAATGCACTGAGCCAGCAGTCATCAGCAAG  150

seq1  CCTTCACGGTCCAGGTTCACAGAGTCTGGCAGCCCACAGACAGAATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACGGTCCAGGTTCACAGAGTCTGGCAGCCCACAGACAGAATACAG  200

seq1  ACCTGTGATATGGGATGAAGGAGTGCACAAAGGTGGCTGTCAAAATAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGATATGGGATGAAGGAGTGCACAAAGGTGGCTGTCAAAATAGTG  250

seq1  TCCTCTGTGCTAACCATAGCTCCAGGCAGGGGGATGTGCTTGGGACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGCTAACCATAGCTCCAGGCAGGGGGATGTGCTTGGGACACAG  300

seq1  GAGGGACCAAGGCTGTCCAAAGGGGCTAAGAAGAGCCTAAAGAAGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCAAGGCTGTCCAAAGGGGCTAAGAAGAGCCTAAAGAAGAGCCT  350

seq1  AAGACATCACCCACCACAGATATTCAAAAGACCAAATAATGCCCTACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCACCCACCACAGATATTCAAAAGACCAAATAATGCCCTACTGT  400

seq1  CATGAGGAGATAAGTTGGGGGTAGGCCAGAGTGGGAGGGAGTGCCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGAGATAAGTTGGGGGTAGGCCAGAGTGGGAGGGAGTGCCAGCTG  450

seq1  GCAACAACATACCCCACCCCCAACTATAGACAAGAGCAAACAAAGATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACATACCCCACCCCCAACTATAGACAAGAGCAAACAAAGATAAC  500

seq1  GTCCAAAGTGAAGCTCTCAGCTTCCTTCACCCTAGCATAATACCAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGTGAAGCTCTCAGCTTCCTTCACCCTAGCATAATACCAAACTC  550

seq1  CTCTCTTACCACAGCCTACCTGTGAGCCACCCATGAGACAAGCCATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTACCACAGCCTACCTGTGAGCCACCCATGAGACAAGCCATAAGG  600

seq1  CTTAAACTGGCCCCATTTTCTGGATGTGAACACAGAGGCTCCATGGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTGGCCCCATTTTCTGGATGTGAACACAGAGGCTCCATGGACCC  650

seq1  TTTGCCCAAGCCATGCTCTTTCTACTGCATCTTTCAAAGATCTGCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCAAGCCATGCTCTTTCTACTGCATCTTTCAAAGATCTGCTCTTT  700

seq1  TCCGTGTTCTGCAGAGGTATTGCTGTAGGGGCAGTGCGGAGAGCCGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTTCTGCAGAGGTATTGCTGTAGGGGCAGTGCGGAGAGCCGGTGC  750

seq1  AGCGGCGTTCAGCTCCCAGGGGCTTCAAGGGGGTGGTGGGAACCCCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCGTTCAGCTCCCAGGGGCTTCAAGGGGGTGGTGGGAACCCCCAAC  800

seq1  ACCCAGCCCT-AACTGGAGTCTTCTGGCTGGGATCACAGCCCTACGACGA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCTAAACTGGAGTCTTCTGGCTGGGATCACAGCCCTACGACGA  850

seq1  CGGAGCTGCTGCCCACCAGCCGGCCCCTTGGCATCC-GGCCCTGGATGGC  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGGAGCTGCTGCCCACCAGCCGGCCCCTTGGCATCCGGGCCCTGGATGGC  900

seq1  AGCCAGCTGGGAAAGGAAGCAGCTTGGCTGGCCGCCAGTTCACAGTG-CC  947
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AGCCAGCTGGGAAAGGAAGCAGCTTGGCTGGGCGCCAGTTCACAGTGCCC  950

seq1  TGAGCTGTCAGCCGGGAGGCAGGCCAGGCAGGACTGAGACCCCCTGCCCC  997
      ||||||||||||||||||||| |||| ||| |||||||||||||||||||
seq2  TGAGCTGTCAGCCGGGAGGCA-GCCA-GCA-GACTGAGACCCCCTGCCCC  997

seq1  TGAACAGAGCCCTGGCCAGGCCACCAGG-ATAGGGCCAAGCTCCTCCTCC  1046
      ||||||||||||||||   ||||||||| |||||  ||||||| |||| |
seq2  TGAACAGAGCCCTGGC--AGCCACCAGGAATAGG--CAAGCTCTTCCT-C  1042

seq1  CATCAAGAGATTCAAGGGGGCCCTGTCATTGCCAGCCCTGAGCAGGGAGC  1096
      |||||||||| || ||||| || |||||||| |||||||||||| |||||
seq2  CATCAAGAGAATC-AGGGGCCCTTGTCATTGGCAGCCCTGAGCA-GGAGC  1090

seq1  AGGGGACGTAATCTTGCTGGGTCCCCATTTATTCAGCTTAGCTTTGTACA  1146
      | ||||||| |||||||| |||  |||||  |||||||||||  ||||||
seq2  AAGGGACGTTATCTTGCTTGGT--CCATTATTTCAGCTTAGC--TGTACA  1136

seq1  A  1147
      |
seq2  A  1137