BAC Information

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BAC

Clone NameB6Ng01-155A07
Chromosome15 (Build37)2 (Build37)
Map Location 13,331,001 - 13,331,54273,390,838 - 73,390,977
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155A07.bB6Ng01-155A07.g
ACCDH949910DH949911
length989139
definitionDH949910|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A07, 5' end.DH949911|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,331,001 - 13,331,542)(73,390,838 - 73,390,977)
sequence
gaattcctgatcattccaagacttttatcttgaatgggtgttggagtttg
tcaaatgctttctccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacattgatggatttctgtatattaaacc
atccctgcatccctggaatgaaacctacttggtcagggtggatgattgtt
tttatgtgttcttggattcggttagcgagaattttattgagtatttttgc
atcgatattcataagggaaatttgtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttctgcttctattttgaggaatagtttgtgaagaactgg
aattagatcttttgaaggtctgatagaactctgcactaaacccatctggt
cctgggctttttttgtttgggagactattaatgactgcttctatttcttt
aggggatatagaactgtttagatcattaacctgatcctgatttaactttg
gtacctggtatctgtctagaaacttgtccatttcatccaggttctgcagt
tttattgagtatagccttttgtagaaggatttgatggtgttttgggtttc
ttcaggatctgttgttatgtctcccttttcatttctgattttgttaatta
ggattttgtccctgtgccctctagtgagtctgtctaagggtttatctatc
ttgttgattttctcaaagaaccagctcctcgtttggttgattctttgaat
agttcttcttgtttccacttggttgatttcacccgtgagttgattatttc
ctgctgtccactcctcgtgggtgaatttccttccttttgttctagagctt
taggtatgttgtcaagctactagtgtgtgctctctctagtttctttttgg
aggcactcagagctttgagttttctcttagaatgctttc
aacctttgcaaagaattgtgttctctcttgaagaagaaaaaaaagagaag
ggaaaggagggagaggaggaggaggagaaaggaagagaagaaggaggagg
aggaggtggagaagataagaaggagaaaaggaaggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13331001_13331542
seq2: B6Ng01-155A07.b_47_587 (reverse)

seq1  ATCAAGATCAGGTTAATGATCTAAACAGTCCTATATCGCCTAAAGATATA  50
      |||| |||||||||||||||||||||||| ||||||| |||||||| |||
seq2  ATCAGGATCAGGTTAATGATCTAAACAGTTCTATATCCCCTAAAGAAATA  50

seq1  GAAACAGTCATTAATAGTCTCCC-AACCAAAAAAGCCCAGGACTAGATGG  99
      ||| ||||||||||||||||||| ||| ||||||||||||||| ||||||
seq2  GAAGCAGTCATTAATAGTCTCCCAAACAAAAAAAGCCCAGGACCAGATGG  100

seq1  GTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAATATCTAATCCCAGTTC  149
      ||||||||||||||||||||||||||||||  || ||||||| |||||||
seq2  GTTTAGTGCAGAGTTCTATCAGACCTTCAA--AAGATCTAATTCCAGTTC  148

seq1  TTCACAAACTATTCTACAAAATAGAAACAGAAGGTACTCTACCCAACTCA  199
      ||||||||||||||  |||||||||| |||||||||||||||||||||||
seq2  TTCACAAACTATTCCTCAAAATAGAAGCAGAAGGTACTCTACCCAACTCA  198

seq1  TTCTATGAAGCCACAATTAGTCTGATACCTAAACCACAAAAAGACCCAAC  249
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGACCCAAC  248

seq1  AAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAA  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGATAGAGAACTTCAGACAAATTTCCCTTATGAATATCGATGCAAAAA  298

seq1  TACTCAATAAAGTTTTCGCTTACCGAATCCAAGAACACATCAAAACAATC  349
      ||||||||||| || ||||| ||||||||||||||||||| |||||||||
seq2  TACTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATAAAAACAATC  348

seq1  ATCCATCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAA  399
      ||||| |||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATCCACCCTGACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAA  398

seq1  TATACGGAAATCCATTAATGTAATCCAGTATGTAAACAAACTCAAAGACA  449
      ||||| ||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TATACAGAAATCCATCAATGTAATCCAGTATATAAACAAACTCAAAGACA  448

seq1  AAAACCACATGATTATCTCGTTAGATGCAGAGAAAGCATTTGACAAAATC  499
      ||||||||||||| |||||||||||||  |||||||||||||||||| ||
seq2  AAAACCACATGATCATCTCGTTAGATGTGGAGAAAGCATTTGACAAACTC  498

seq1  CAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  542
      ||||||||||||| |||||||||||||||| ||||||||||||
seq2  CAACACCCATTCAAGATAAAAGTCTTGGAATGATCAGGAATTC  541

seq1: chr2_73390838_73390977
seq2: B6Ng01-155A07.g_72_210

seq1  AACCTTTGCAAAGAATTGTGTTCTCTCTTGAAGAAGAAAAAAAAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGCAAAGAATTGTGTTCTCTCTTGAAGAAGAAAAAAAAGAGAAG  50

seq1  GGAAAGGAGGGAGAGGAGGAGGAGGAGAAAGGAAGAGAAGAAGGAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGGGAGAGGAGGAGGAGGAGAAAGGAAGAGAAGAAGGAGGAGG  100

seq1  AGGAGGAGGAGAAGAAGAAGAAGGAGAAAAGGAAGGAGAA  140
      |||||| ||||||| | |||||||||||||||||||||||
seq2  AGGAGGTGGAGAAG-ATAAGAAGGAGAAAAGGAAGGAGAA  139